People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14693 LG3 51315596 51316722 PREDICTED: myb-related protein Myb4-like
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/A 51315717 missense_variant p.Pro41His
T/C 51315742 intron_variant
T/A 51315769 intron_variant
C/T 51315829 intron_variant
G/A 51316042 intron_variant
G/A 51316101 missense_variant p.Arg99Gln

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14693.1
MGRMPCCEKVGFKKGPWTPEEDNKLLAYVEKHGHGNWRSVPAKAGLERCGKSCRLRWINYLKPDIKRGNFSSEEDHTIIQLHALLGNKWSIIAAHLPQRTDNEIKNYWNTNVKKRLIRMGLDPLTHKPIKRNNFEDYGGGHHEQSKDTMNMDHVAQWENARLEAEARGSMLQVESHSSHHPQLMLSKIPTQLSPSSSDSLSIKHNTVYNMYDLILATNHDLPSPVSSFSVTGWKLPLVSTNIKLFTVTGTSLSSESDFNVSETSFQMIEDRVSNLQDDDITMALEAFTTARCESLQELLRGSTLTW*


CDS Sequence:
>Vu_14693.1
ATGGGAAGGATGCCATGCTGTGAGAAGGTAGGGTTCAAGAAAGGACCATGGACTCCAGAAGAAGACAATAAGCTCCTTGCTTATGTTGAAAAACATGGCCATGGAAATTGGCGGTCAGTACCTGCCAAAGCAGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGATATAAAACGAGGAAACTTCAGCTCGGAGGAAGACCACACCATTATTCAACTCCATGCTCTTCTTGGAAACAAATGGTCAATCATAGCAGCTCATCTGCCTCAAAGAACGGACAATGAAATCAAGAATTATTGGAACACCAATGTCAAGAAAAGACTCATCAGAATGGGCTTAGATCCGCTCACTCACAAACCAATAAAAAGGAACAACTTTGAAGACTATGGCGGTGGTCATCATGAGCAGTCCAAGGACACCATGAACATGGATCACGTGGCTCAGTGGGAGAATGCTCGACTTGAAGCTGAAGCCAGAGGATCTATGTTGCAAGTTGAATCTCACTCCTCACATCACCCTCAGCTAATGTTGAGCAAAATCCCAACACAACTTTCTCCTTCCTCTTCAGATTCACTATCAATCAAACACAACACAGTATACAACATGTATGACCTTATACTTGCCACAAATCATGACCTTCCATCACCAGTATCCTCGTTCAGCGTCACCGGTTGGAAGCTTCCTTTAGTCTCTACCAATATTAAACTATTCACCGTCACCGGAACATCACTCTCTTCTGAGTCTGATTTTAATGTGTCTGAAACTAGTTTTCAAATGATAGAAGACCGTGTGTCAAACTTGCAAGATGATGACATCACCATGGCTCTGGAAGCATTTACAACCGCAAGATGTGAGAGTCTTCAAGAGTTGTTAAGGGGTTCCACACTGACATGGTAG


Promoter Sequence:
>Vu_14693::LG3:51313596-51315596(+)
GCAGAAGGACAAGGGTATAGCTTCGGACCTGCCACGTTTATTCTGACCCCTTCTTAGGGTACAAAATATTTATACTGATTACGGTATCAATGACCTACCATCGTACATTCTTACCCAAGAACTTTTAAATACTTAAATATTTCAAATTTGTATAAATAGTATAAGTTGAAAAATATTTAGCTTAATTTGGTAAAGGTTTAATCATTCACTAAGTTCCTATTTTCGCATGGAATCTCAATTTCGTCCCTTTCTTTCTGAAAATATCAATTGGGTCCCAATTTTATGAAAATTGCAACAAATCGATCCTTTCCGTTAATTTGGCTGGACGGCGTTAAAAAAATTGATGAGTGAATGCTGAGATGACAAACGAGCGCTCGTCCACCAGCGAACGAACGCTCGTCCAGCAGCGAACGAACGCTCGTCGACCACCGAACGAACGGTCGTCCAGTGTGGAACGAACGGTTGTCCAGCAGTAAGAGGTCCACGAGCGTTCGTTCTCTGGTGGACGAGCGTTCGTTCGCTGCTGGACGAGCGTTCGTTCGCTGCTGGACGAGCGTTCGTTCGCTGCTGGACGAGCGTTCGTTCGCTGCTGGACGAGCGTTCGTTCGCTGGTGGACGAGCGCTCGTTCGTCATCTCAGCATTCACTCATCAATTTTTTTAACGCCGTCCAGCCAAATTAACGGAAAGGATCGATTTGTTGCAATTTTCATAAAATTGGGACCCAATTCATATTTTCAGAAAGAAAGGGACGAAATTAAGATTTCATGCGAAAATAGGGACTTAGTGAATGATTAAACCTTTTGTAAAAGTACACAGCTTTATATGCTATAAAGATAGTACACAACTTTATGTTTACTTTCTAGAAAAAAGTCTATGGAAAAAAAGTATCCTCTATCCTTATTTAATTATTAATTGTTTTTAATCTATCGAGTAGTCATGGTCGACTTAATTATTTTGAAACAAACTTTAATTATTTTAATTAGAAATTTGGAAAAAGTTTTTGCCAACTTCCTTCTTTATGCATTAGTGTCGGTCGGATTGGATTGTATTAAATTCGAATCTAATCTAATGAATTCAATATAATTTAAATTTAATATTTTAAAATTTATATTTAATTATTTAATGTATTGAGTTAGTCTGATTTAAGATGTGAGTTAAATTTTTAAAATTTTTAATTTATAGTAAAAAAGACATGTATACGGAATTTTTAACAAACAAAAATATGTATAATTTCAATAATGATTATTATAATTGACTATAATTTTAAATAATTTACTACTAAATTTTAATAAAACAATATGATTTTAAAATAAAATTTAAAATTTAAAATATATTTATAGATCTTAAAATATAAATTTGAGATTGAGTTGGATATTGATAAAATTCTAACATTTTTCACTTGTCAAATCTAACCCGATTCTATATTCAATTTTTTTTCGAATTTTTTCGGGTTTGATCAAATACAGTTTTTTTTTTTCTCAGTTCTATTATGTATGATAAAAAATATTAAAATGGATAATGGTGTAGTTAATCTACTTAATATTGCTTTGTAATCTTTTAAGAGCCGATAATCAAGGTTTTTAATTCATGGATTTTATTTTAATCCACCTTTATATTAATTAGAAAATTGATATAACCAATAGTTTCAAAATATTCTTCCTTGTATATTTGGATGGAATTTATTTATTAATACAACATCGTATAGAAGATTTTCGAAGTTTTGTACTATTCCATAAATTTCAACTAATAATAGAAAGTATACTACAAAGAATATGTGTCTAAGTTTTTTTCAATTTAAATTTTACATCTTTTAAGAGCAAGATATTAGCTCCCTTCTCAATAAATTTCCATTTGAAAGTGTTTGCCCAACCATGGTAAAAGTACTCTCACTATATATACATACATACACACACTCATATATATGTATATATAGGTTAACTTTTGTACTGGTGCTGCTTACCAAGAAGCATTGTTTCTCCTAATCAGTTTGTCATAAAAA


Gene Sequence:
>Vu_14693(+)
ATGGGAAGGATGCCATGCTGTGAGAAGGTAGGGTTCAAGAAAGGACCATGGACTCCAGAAGAAGACAATAAGCTCCTTGCTTATGTTGAAAAACATGGCCATGGAAATTGGCGGTCAGTACCTGCCAAAGCAGGTAAGATACAACTTATCTGTACCTTTTTCTTTTTCTTGGATCCATGAGTCTAAATGTTCTTGGTCCACCGAGGAATAAATAATTCCTAATTTTCTGTTACCTACATGTATGATATATGTCTAGGTCTTGAAAGATGTGGAAAGAGTTGCAGATTGAGGTGGATTAACTATCTCAAACCTGATATAAAACGAGGAAACTTCAGCTCGGAGGAAGACCACACCATTATTCAACTCCATGCTCTTCTTGGAAACAAGTGACCTTTAGTTTCTTCTGGTTTTGTGATTTTTCTGTTGTTTGAACAGAAGCTAATCATGTTTTTGTATTGCAATATCACAGATGGTCAATCATAGCAGCTCATCTGCCTCAAAGAACGGACAATGAAATCAAGAATTATTGGAACACCAATGTCAAGAAAAGACTCATCAGAATGGGCTTAGATCCGCTCACTCACAAACCAATAAAAAGGAACAACTTTGAAGACTATGGCGGTGGTCATCATGAGCAGTCCAAGGACACCATGAACATGGATCACGTGGCTCAGTGGGAGAATGCTCGACTTGAAGCTGAAGCCAGAGGATCTATGTTGCAAGTTGAATCTCACTCCTCACATCACCCTCAGCTAATGTTGAGCAAAATCCCAACACAACTTTCTCCTTCCTCTTCAGATTCACTATCAATCAAACACAACACAGTATACAACATGTATGACCTTATACTTGCCACAAATCATGACCTTCCATCACCAGTATCCTCGTTCAGCGTCACCGGTTGGAAGCTTCCTTTAGTCTCTACCAATATTAAACTATTCACCGTCACCGGAACATCACTCTCTTCTGAGTCTGATTTTAATGTGTCTGAAACTAGTTTTCAAATGATAGAAGACCGTGTGTCAAACTTGCAAGATGATGACATCACCATGGCTCTGGAAGCATTTACAACCGCAAGATGTGAGAGTCTTCAAGAGTTGTTAAGGGGTTCCACACTGACATGGTAG

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1321740