Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14635 LG3 50566989 50568161 AP2/ERF and B3 domain-containing transcription factor RAV1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, cellular response to hypoxia, photoperiodism, flowering, photoperiodism, flowering, ethylene-activated signaling pathway, cellular response to hypoxia, cellular response to hypoxia, cellular response to hypoxia, photoperiodism, flowering, ethylene-activated signaling pathway, ethylene-activated signaling pathway, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, ethylene-activated signaling pathway, photoperiodism, flowering, regulation of transcription, DNA-templated, photoperiodism, flowering
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, protein binding, DNA binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 50567069 synonymous_variant p.Leu27Leu
T/A 50567202 missense_variant p.Ser72Thr
C/A 50567337 intron_variant
G/T 50567378 intron_variant
C/T 50567402 intron_variant
G/A 50567536 missense_variant p.Gly90Asp
A/G 50567557 missense_variant p.Asn97Ser
T/C 50567573 synonymous_variant p.Ala102Ala
A/T 50567588 synonymous_variant p.Val107Val
T/C 50567624 synonymous_variant p.Thr119Thr
A/T 50567632 missense_variant p.Asp122Val
C/T 50567687 synonymous_variant p.Phe140Phe
C/T 50567777 synonymous_variant p.Phe170Phe
T/A 50567781 missense_variant p.Tyr172Asn
C/G 50567783 stop_gained p.Tyr172*
A/C 50568051 missense_variant p.Asn262His
A/T 50568052 missense_variant p.Asn262Ile
G/T 50568064 missense_variant p.Ser266Ile
C/T 50568065 synonymous_variant p.Ser266Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14635.1
MDCMDESTTTESLSISLSPTVSSEDKLLLLSSNNPSPPPPSTTLCRVGSGASAIVDPDGGGNTEVESRKLPSSKYKGVSKRSRGVVRRRGGAAAAGNGNSIAGACFVKAREQLFEKAVTPSDVGKLNRLVIPKQHAEKHFPLQSVNGVSATAAKGVLLNFEDVAGKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDTVCFHRSTGPDRQLYIDWKARNNNVNEVGLFGPVGPVVEPIQMVRLFGVNILKLPGSEPNGNNNASGTIPGFCNGKRREMELFSLECSKKPKIIGAL*


CDS Sequence:
>Vu_14635.1
ATGGACTGCATGGACGAGAGTACCACCACTGAATCACTCTCCATCAGCCTTTCCCCCACCGTCTCATCCGAGGACAAGCTTCTTCTGCTTTCGTCCAACAATCCTTCTCCTCCGCCGCCCTCCACCACCTTGTGTCGCGTCGGCAGCGGTGCCAGCGCAATCGTAGATCCTGACGGCGGTGGAAACACCGAGGTCGAGTCCAGGAAGCTTCCCTCGTCGAAGTACAAAGGCGTCAGCAAGCGCAGCCGCGGAGTCGTACGGCGGCGCGGCGGAGCCGCCGCGGCCGGGAACGGTAACTCGATCGCTGGCGCGTGTTTTGTAAAGGCGCGTGAGCAGCTGTTCGAGAAGGCGGTTACTCCGAGCGACGTGGGGAAGCTGAATCGGTTGGTGATCCCGAAGCAACACGCGGAGAAGCACTTCCCGTTGCAGAGCGTTAACGGCGTTAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGCGGGGAAAGTGTGGCGATTCCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGCTTTCACCGGTCCACCGGACCGGACAGGCAGCTGTATATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGGTTGTTCGGTCCGGTGGGACCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGCCGAATGGTAACAATAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA


Promoter Sequence:
>Vu_14635::LG3:50564989-50566989(+)
ATTTTAATACAAATATATATTGTTTTCATTACATTTATACCCTACAAAATAATTTTTCCATAGAAAAACAAATTTATGTACAAGTAAAAAATATTTTAGAAACTTAATACGAATAAATATTTCTACTACTTTGTTTATAAACGAATTTCAATTCTAGAAATGTTATGAAATCAAACATACAATACTAAAAGATTCGGACTTAAATGTTTTTAGGATTTAAAACCTCTTTATCAGTTATGGTCTCGTAAAATGAGGAAGACACAAACACAACTAATAAGTCTTATTAATAAAAGTTGGCTGTTTTTATTGCTCAACAATTAAATCGAGTCAACATTTTTTTTTACTAATTTCTCTGTCTTATTTTTAAAATATACTATTTTTTTAAAATTTTTACTAATTTCCCTGTTTTACTCAGAGTAGCAACTAAATACAAATGGGTGAGACAAGTGAACCATATTTCCCATTAATTCACCATTTAAACAGTACCGTCTTTACCAACAAGGAGAAGACGTTATGATAAACATATATTTATATATATTATATTTTAGTAGAAATTTATGATACGGTATTATTGAAAAATTTGGTGAGATTATTATTAGTATGATGTAGAATTGAGGGCCCACGGTCTGTAGCACCATGGTTTTATCAAACTATTCCGTGTGAGTCCCTGTAAAGAGGAAGGACTTGTCCGTACATAATAAAATAATAATAATAATAATATTATTATTTTGAAATGCAATTTCGGAAGGCATTCGATCATGGATAGTATATTTCGACAACATTTTTCATAACATTTGTTGACGTATTATTATTATTATTAATTATGAAATACTAATAAGATGATGATACGTAAATGATACATAAATGTTATGAAAAGTATTATTATATTTTTGGATTATTAACCGAGTAACCGTTGTGTGAAAGTATGAGGTTATCCAAGAGAAGAGAGTGTGGCCCCAACACAGTTTGTCTGAATGAATAAATGGGTGGGATGGTTATATAATGCAGCACAAGGGTTGTCTCAATCTGTACCTGGAAGCGTTCCAAGTCATTCTAAGAAGTTTCATTTTGGACAATGAATGCAGAGAACAAACAAGAGAAAGCACCCTCCTCCCACTTGAAGGAAATATGAGATTTTTGTGTTTCTAATTTTGTGGTTGTTTTGTTTTATTTTGGAGAGAAGATACTACTGGGCTTGAACCTGGCCAATAAGACAAAGTGGAACGAATGAGATGAAGGCAAGTGGGGACAAATTAGGAGGGAGAGGGTAAGAATTTGTTGTTGGATCACCATGTCCCTTCTTCAATGCATATCCATGCCTCCAATAAAACCGAAACCCCACCACCACCATCACCACCCATTTACCTCTTTCACTTTCCTTTTTTACACTACATATTATGTTTATCAGCATTAAAAGAAGACCAAATAATAATAGATGGGGGTTAAAGAAAAAAAAAAAGAAAAGAGTTGTACAGGGGGGATGAACTTCACTAAATCAAGGTCCACCCTCCTCTCATGTGAACCCCATCAACTTGATAATAAAGTAGGACCCACCTCACATACAAAGCCCACAACACTCAGTCTTCTTCTCCTTTTTACCCTCTCCTTCCCACACCATGAATCTTCCTACTCCCTCACCCATCCATCCCATCCCAGTTGACCCACATCCCACACTTACACTCTCTCTTCCATTTACAACATTATTATTATTATTATTATTAAACACATACTATATATCCAACTACACCTCATCATTAATAAATTCTCCCAACTAAGCATATTTCCTTTTCCACTTAGGATAATATTAAAATAACACATTTACTAGGGACACCTTCTTTCTCTATATATTACCCCCTCAAACAACCCCTATTCCCACCCAAACACATCTCTCCTGCTACCTCTTGGTCAAACAAACTAACAAACCATCCTTCCTCTCTTCTTTCCTTTCTCTCTTTTTTTTTCTCACTTCAAATTCGTACAAAATAATAATTTACTCAAAA


Gene Sequence:
>Vu_14635(+)
ATGGACTGCATGGACGAGAGTACCACCACTGAATCACTCTCCATCAGCCTTTCCCCCACCGTCTCATCCGAGGACAAGCTTCTTCTGCTTTCGTCCAACAATCCTTCTCCTCCGCCGCCCTCCACCACCTTGTGTCGCGTCGGCAGCGGTGCCAGCGCAATCGTAGATCCTGACGGCGGTGGAAACACCGAGGTCGAGTCCAGGAAGCTTCCCTCGTCGAAGTACAAAGGCGTCGTGCCGCAGCCCAACGGCCGCTGGGGCGCGCAGATTTACGAGAAGCACCAGCGCGTGTGGCTGGGAACCTTCAACGAGGAAGACGAGGCGGCCAGGGCATACGACATCGCCGCGCAGCGCTTCCGCGGCAAGGACGCGGTCACCAACTTCAAGCCGGTATCCGGCGGCGCCGGAGAGGGCGACGACGAGGACGGCGAGGCCGAGTTTCTCAACTCGCATTCCAAGTCGGAAATCGTCGACATGCTCAGGAAACACACGTACAATGACGAGCTTGAGCAGAGCAAGCGCAGCCGCGGAGTCGTACGGCGGCGCGGCGGAGCCGCCGCGGCCGGGAACGGTAACTCGATCGCTGGCGCGTGTTTTGTAAAGGCGCGTGAGCAGCTGTTCGAGAAGGCGGTTACTCCGAGCGACGTGGGGAAGCTGAATCGGTTGGTGATCCCGAAGCAACACGCGGAGAAGCACTTCCCGTTGCAGAGCGTTAACGGCGTTAGCGCGACGGCGGCGAAGGGCGTTTTGTTGAACTTCGAAGACGTTGCGGGGAAAGTGTGGCGATTCCGGTACTCGTATTGGAACAGTAGCCAGAGCTACGTTTTGACCAAAGGTTGGAGCCGGTTCGTTAAAGAAAAGAATCTGAAAGCCGGTGACACGGTTTGCTTTCACCGGTCCACCGGACCGGACAGGCAGCTGTATATCGATTGGAAGGCGCGGAATAATAATGTTAACGAGGTTGGGTTGTTCGGTCCGGTGGGACCGGTTGTTGAACCGATTCAGATGGTTCGGCTCTTCGGCGTTAACATTTTGAAACTACCCGGTTCGGAGCCGAATGGTAACAATAATGCAAGCGGAACTATTCCCGGGTTCTGCAATGGCAAAAGAAGAGAAATGGAGCTGTTTTCGTTGGAGTGTAGCAAGAAACCTAAGATTATTGGTGCTTTGTAA