Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_14536	LG3	49226551	49227135	PREDICTED: basic leucine zipper 43	Map

Annotations

category		relationship type		keyword
Cellular Component		located in		nucleus
Molecular Function		enables		protein homodimerization activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity, protein heterodimerization activity

SNP	Position	Effect	Amino acid change
G/T	49226648	missense_variant	p.Ser163Tyr
T/C	49226652	missense_variant	p.Thr162Ala
C/T	49226740	synonymous_variant	p.Glu132Glu
G/T	49226869	synonymous_variant	p.Ile89Ile
C/T	49226953	synonymous_variant	p.Ser61Ser
A/G	49227010	synonymous_variant	p.Asn42Asn
G/A	49227018	synonymous_variant	p.Leu40Leu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_14536.1

MVPSEVRGVHYLAPENPFLVPPNFGLVQSDIPNLHMNTLLSNFPNCHFPHSGLEFLAPPSSYLSSNSTSDEADEIHFNIIDERKHRRMISNRESARRSRMRKQKHLDELWSQVVRLRTENHNLIDKLNHMSESHDRVLQENTRLKEEASDLRQMLADMQIGTSFACAMEELEDLPCNKPDPSNQSITPADMIHE*

CDS Sequence:
>Vu_14536.1

ATGGTTCCTAGTGAGGTAAGAGGAGTCCACTATCTAGCACCTGAAAATCCATTCCTAGTTCCACCCAACTTTGGCCTTGTGCAAAGTGACATTCCAAACCTTCATATGAACACCCTCCTAAGCAATTTTCCAAACTGCCACTTCCCTCATTCAGGCCTTGAATTTCTTGCTCCTCCCTCCTCGTACCTCAGCAGCAACTCAACCTCTGATGAAGCTGATGAAATCCACTTCAACATCATCGACGAAAGGAAACACAGGAGAATGATCTCCAACCGAGAATCCGCCCGCAGATCAAGGATGAGGAAGCAAAAGCACTTGGATGAACTCTGGTCGCAGGTTGTTCGGCTCAGAACTGAGAACCACAACTTGATTGACAAACTCAACCATATGTCCGAGTCCCATGACAGAGTCCTCCAAGAGAACACACGCCTCAAAGAAGAAGCTTCTGATCTCCGCCAAATGCTAGCAGACATGCAAATTGGAACCTCCTTTGCTTGCGCCATGGAAGAATTGGAGGACCTTCCATGCAACAAACCTGATCCCTCAAACCAATCGATCACTCCTGCAGATATGATTCACGAATGA

Promoter Sequence:
>Vu_14536::LG3:49227135-49229135(-)

ATGTTTATTATATTCATTTAGCAAATGTTAAAAAGTGGCTTCCACTTTTTGCTGCCTTGAACGAGATAGGATTAATAAGGTATTTTAGGCAACTACAGAGAAGCATAAAAAGTTATGAAGTACTATTTTAGAGAAGAAAATAGATATGGCAGCCTCTGATACGTTGTGATCACAAACAAGGTGTTGAGTGAACATGAAGCGATGAAGACCTTCTTCAAATGTGATGGTTTCTACAGTGTTTTTGAGACATCTGTAATCTCATAAACTGCTTCTATAATCTCATGCACATAGTGCTATTCAGTTCCCATCCAATCAATTTGGAGAAAACATAACGTAAAGGATCAAAATTCAAAAGTGAGATAGAAAAGAAAAAGCATACTGAACACAAGTCATTTGATTATTTCAGTAATGGATTCCAAAAGCTATGACCCTGATTATTTATAGTTTATCATTTTGATTAGAACTGCACCAAGGTAAACAAACACTAAAGGAACTTAATTTAAAATCACATTAGCATAACATTATAATAAGAACCCCGATAAACTGGTAAACAGAACATCAAAGTTTGTAATCAGGTTCACACTCAGTATTCGTAATTTTATTTTCTTTCATGTGGCTAATAGAACGGTTCACATGATTTAGTATTAAGATACGTAAAATATTCTTTGAGTTATAATTTAGACGTTATTATAATTTGTACAGATTTTATTCATTTAATAAACGAAGAATTTATATGTATATATATAGTACACTGATATATGAAATAATACATTAAAATTATTCTTTAAACTCTTTTATATGGTATCAAAGTCTTGTTATAACATATTTTAATCATATTTGTTATTTGTTAGACATATTGTTTTATTTGCTATCGGATCGTTATTGAATCGTCCATTGATGTCTAGTCTCACACTCGAAATTTATATATCTTAGTGTGAGAAGGATGTGTTGGAAGTTTCACATCGACGAAAGATAAGATCAATTTACAGTATATAAATAGGTATAAACCTCACTTTACAAACCGATTTTATGGGATTGAGTTAGACTTAAAGTTCAATCCTTAATCTTTAGTGCTTAATCTTTAGTGATAGCTCGGAAAAAACAATAGTTTGCATCATAGTCCATCTAATTTATATATTTTAGTAGCTCGTGAGTCATCATAATTATAATAAATAATGACCATCAAATATCTTTCAAACTAGCCTATATTGCGTCATGCGTGAAAAGAAATTATTGGGTGTAAGAGTTTACGGGTTTCAATAATATTGCTTCAAAATTGGATAGAGACCTCAAGAAAAGCTCTCTTGAAATTGATTTATGCATTGTTGTAATGTGCTAAAAGGATTTTTAAATGGGCAATCACATTACATGATGCGTCTGCAACATTTGCATTATGATGATGACCACTACAAACACATCAAACAGTAATTATAAACAGGGTTTTATGAAAGAGTTCAACGGACCGTAATAAATTATTGACGTTTTTATGATCCTAATTGCAATTTCATCACTTCACAAGGAATCGAGACTGCAACCATGGCCAGAAATGCAATTTAATAACTTGAATGCAGATTATATTTGCCCAATGTTTCAATTCTTAAATTTCCATTAAAAATGAGTAAAGTGAACATATAAAGAGCCATAGATAACATATAGATTAGATAGAAGTAACATTATTACACATAGCCACATACATATAACCCAAAAACTTTATGACATGGAGTCTGGACAGCCACTTATATGATAAAAAGTGGTCTTACCCTGAATGTATATCTCATACCACATGCATACATTAGGAGCACTTCCCAATTATTGTTGAATTTCTGCTCATGTAAGCTCTCTTCCAAAACTGACCCCACTTTTCTGGCCATCATCTTCTATAAATTCACCCCATTTCCAACACAACCTTCCCCAGTTCTAATATCATCTCAGTCTCTCAATACACCTCACAACCACACCCATAAGGAATAATCTTGAAAATCAGTTCCAAACTTCCAACC

Gene Sequence:

>Vu_14536(-)