Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_14504	LG3	48759892	48762300	hypothetical protein	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	protein dimerization activity, DNA-binding transcription factor activity, DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/T	48760098	missense_variant	p.Leu262Met
G/T	48760177	synonymous_variant	p.Leu235Leu
A/G	48760190	missense_variant	p.Leu231Pro
T/A	48760195	synonymous_variant	p.Ser229Ser
A/C	48760504	intron_variant
C/T	48760533	intron_variant
A/G	48760564	intron_variant
A/T	48760584	intron_variant
C/A	48760590	intron_variant
A/T	48760787	intron_variant
A/C	48760843	intron_variant
G/T	48760849	intron_variant
T/A	48760992	intron_variant
G/C	48761254	intron_variant
T/C	48761259	intron_variant
C/T	48761417	intron_variant
T/G	48761544	intron_variant
G/T	48761663	intron_variant
C/T	48761787	splice_region_variant&intron_variant
G/A	48761827	synonymous_variant	p.Ala158Ala
A/T	48761995	synonymous_variant	p.Ser102Ser
C/T	48762004	synonymous_variant	p.Arg99Arg
T/C	48762040	synonymous_variant	p.Ala87Ala
G/A	48762139	synonymous_variant	p.Asn54Asn

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_14504.1

MHQQQQQQQNSDNIFGGSRGLMFPEVTPIMQPWSIPPVHSFNPGPVHYNNINTNPVRDHHDQTFIVPPTPSPYASFFSRRVPSLQFAYESPSSDLHHLRIISDTLGPMVQPGSAPFGLQAELGKMTAQEIMEAKALAASKSHSEAERRRRERINNHLAKLRSLLPNTTKTDKASLLAEVIQHVKELKRQTSLIAESSAVPTEADELTVDAADEDGKFVIKASLCCEDRSDLLPDLVKTLKALKLRTLKAEITSLGGRVKNVLVIAGDEESSNTNGEQSIQQQQQQYCITSIQEALKAVMEKSGGGDESASGNVKRQRTNNINFLEQRSL*

CDS Sequence:
>Vu_14504.1

Promoter Sequence:
>Vu_14504::LG3:48762300-48764300(-)

TTTATTCTAAGAGAATATGCATTTTGCATCAGATTTGATATATATATTTCATATCTACTTTTGCGCATAACAACAAACATGGAAAGGTATGCGTCCATTTTCCATATTTCTAGAATAACGATTTCTTTGTTGGTTTTCTTGAGAAGGAAAAAATTACTACAGAAGATGGCACGGTGGTGAATGGTTTTGCAAGTTGATGATTACCAAGTTGAAGGGTAAAGACTGAGACCAATAAAACGAATAATTTCAACTTAGTTGATGTTCATAAATGATGACTTGCTATGATTATAATGGCAAGACAAAACCCTGATGATCCTAAGCTCAATTTAGATTAAACTTGAAGTTTGGGTAACCGATGTTGAAGAAACATATTACTGCATGCCCACGTAAAATGAAGGTAATGCTGATCCACTATCTCCTATTGCAAGTTTCCACATCAAAAGGTGAAAGAAATTTCAAGCATTAACCTATAAGCTGTACTTTATTTTATGTTCCTGTGTTGTCGTTTACTCGTGGACCACCTCCACTCCACTACTAGAAAAATATAGATCATGTATATGAACAAGTTCGCCATAACCCCCCAAAAGGATAGGGTAATGAGAACCACACATATAAATATGCATAAACATACACACTACACACTACACACCTAGTTTCAACTGAAACCAAGACACTTATTAGGAGAAGCAAGGAGAGAGAAGAGAGGGGGAAGAGTGTGTTCCAAGACACAATGATTACATGGTGTTGGGGAAGCAGAAAGGGTGGCGTGGACATAGTCACATAGCTAAGAGTATGGAAGAACGTGGGGCTTGACCATGGAAACGCCAAAAGGGAAAGTAAAAATGACCCCCCAAAAGAGGGAAAATGAAGTAAAACAAAAAACAAAATGGAGAAATATATATATATATATATATATATATATATATATATATATATATATATACTATAAAATTGTACTACTAACCCAAAATTAAAAAAATGAAAAAGAGAGAAAAGGTTAAGCTGAGCTTTTTTATCATGATGATAACTGTTCAGCCTTTCTGGTCCTTGGTCGGTCGACAATCTTTGTTGTGTTCACTCTGTTGTTCTTGCTTGTGTTTCCCATCTCTTTCTCTCTCTTACACATAGTGCAATTATACACTTTGAACCAATCGGAAGCAACGAAAAATTAGTGTTACTTTATGAGATTATAGTATATATTTTATGGCTGTAAAACATTATATATTGTAGTTTTTGCTGTGTTAGAAAGATGCCACTCCACAGACAGCCCTGAAAGCTACATGGAATGATATAGATAAAGTTAATGCCGTAGGAAGAAAGGAAAGGGGACTAGCAGTACTCAAACAGGCTCTATATATTTTAGAGTGCAGAGAGAAAAAGAGAGAGCAAAGACCAAACATAAGTCCAAAAAGACACCAACACAAAATAAAGGAAAGCTCTATTGGTGGTAAAGGATAAAAGGGATCATTAGCATACCCTTGTGGCAGAAGTATAAACTTACCAAGTGAAAGAGATTTGATAGAGGGAGAGAACAAAAGGAAACATAGAAAGAAACTGATTGATCGATAGAATTACAAGACCGAACTAGAAGAGAACACAGTCAGTCATTCTGCATCAAAGGGATTAAGGTTTGTGTCTTTTTATAGTTTGATTAGTTCCCTCTTGCTCTTTCTCCTTGTCAATGTCCATGTCATTTTTATTCCTTGAGGAAATGAAAAAAATATGAAATATTCTTCTCGATACCCTTTTATCTTTCAGCTCTTGCTCCCTTTTTTCTAGTATTAGACAAAACAGAAAATACCTTAACCTTTCTGACTTTTGAACCCTTAAATCTTCTTCTGTTCACTCCATCACATATAAAGCTTTGGAGTTTGGATTCACATCAGAGGGAGATGAAAAAGGAATTAGATGATCAAGGACAGTGTTCCTCTCAACCAATCAACAACAATAACAACAACAATATTCAAAGCTACCAAGAGCACCTTCTCCTTCAACAACAG

Gene Sequence:

>Vu_14504(-)

ATGCATCAGCAGCAGCAGCAGCAACAAAATAGTGACAACATCTTCGGGGGTTCAAGAGGGTTAATGTTCCCTGAAGTTACTCCAATCATGCAACCATGGTCCATCCCTCCGGTTCACTCATTCAACCCGGGTCCGGTTCACTACAACAATATTAACACCAACCCTGTCAGAGACCATCATGACCAAACGTTTATAGTCCCTCCCACACCTTCACCCTATGCGAGCTTCTTCAGCAGAAGGGTCCCTTCTCTTCAATTTGCATACGAGAGTCCTTCTTCTGATCTCCACCATCTAAGGATCATATCTGACACCCTCGGACCTATGGTTCAACCCGGTTCAGCACCCTTTGGACTCCAAGCCGAGTTGGGAAAAATGACTGCTCAAGAAATCATGGAGGCTAAGGCTCTTGCTGCATCAAAGAGTCACAGTGAAGCAGAAAGAAGACGTAGAGAGAGAATCAACAACCATCTTGCCAAGCTTCGGAGTTTATTGCCAAACACTACAAAAGTAAGTGTATTCAATACAAGATCTTCAATACTATTAATTACTAACTAATATAATTCTATAATAGTTATTATAAAATAACGAGTTTAACATATATATAATGTGATTGTTTGACTTTGCAAGACCTTTCACACATCATGCATAAACTATTTGTTCGTATGTCTCTCAATAAAACACATGCATGAAAATGTAAACCCAGAGTTTCAAATATTATTGCTGTTTTTTGATTAATAGAGTCATTCCTAACTAAAAAAGACATCATCATGTCATTTCTAATTTAAAAGGACAACAAAACTGACAAAACCTCGTATGAAATCACCTAACATGCCTTCCTTATCAGAGACCTGAGAGTATATAATAGGAGAATTTTCAACATGGTGCATTTTTTAACCAAAATGGCATATAAAAAATAGGGTGCATGCAAAAGGTCTTGTTTGTTTCTCTTACTAACCTGCGTTCTTTGGCTTTCCATGTTCTTATTTTGTTTAAAGCGATAGCAACATTTTCATACATACTTACATGAGATAACAGATTTTAATTAACAAAAGACATGTTTGAAAGAACAAGCATGACATATATGTTTATTGTTTTTAGCTTACTTGTTTTGGTATGACTGTGTGTGTGTGTGTGGAAGTTTCAGACGAGTTTAATAGTAAAAAGGGTGATTAAAGATGACAGAAAGGTATTAGTGTTAAGGTAGGTTGTTGATGCAATAAAGAGGAACCAAGCAGCAGTTGAAAAAGCTACACATGGAAATTTCTTGCCGGGTATTGTCATCGGTCAAACTCAGCTCGATAATGATAAAGAAATAAAGCCAGAGAGACAAAGTAGCACCCTTTTCAGGCACACACACATGCACCCACTCACTATTCTATATACCTATCTATCTCATCTCATCTTTCTCTCTATCTACACATGCTGCATGCCACTTCCACCATTCAAAATACCCCCACTACTTCCATTTCATAATCATCAAGCTACACCCCTACCTACCTCAACTTCCACACAATCCCCTCAACCTCTTTTCAAACATTGCACAACTTCCAACCTTTGCTATTAATCATGAGAGAATGTTAGCACTGATTACTGTCTTTAAAATATTCATTATTGCTAAAATATGTTACCAATTTGTACTTTATCATAACCACAAATATTTATCTATACACTTTAACTGTGATTTTTAACGATAAAAAACCATTTATTTACGGCTGTTTATCAACAAATTAGTTTTATTCTCTTATTCACTGATCATTACCCAGTAAAGTAGTTGTTAGTGAGCCTCTAATGTATTATTCTGTTAGAAAAGTTCATTATGTCACTAATATTTCACAATTTACCCTGAAAGAAAAGATGTTTGCTTTGTGCAGTTCAATCTTATATATAAAAAAGTTGTCTTGACAAGTTTTGATTATGTTGTTGCAGACAGATAAAGCTTCGCTGCTAGCAGAAGTGATTCAGCACGTGAAGGAGCTGAAGCGGCAAACCTCTCTGATAGCAGAAAGCAGTGCAGTGCCAACCGAGGCAGACGAGTTGACAGTAGATGCAGCAGACGAAGATGGAAAGTTTGTGATCAAAGCCTCACTGTGCTGTGAAGATAGATCAGATCTCTTACCCGACCTCGTAAAAACGTTGAAGGCCTTGAAGCTGAGAACCCTCAAGGCTGAGATCACATCGCTTGGTGGGCGTGTGAAGAACGTGTTGGTCATTGCTGGTGACGAAGAAAGTTCAAACACCAATGGAGAACAAAGCATTCAGCAGCAACAACAACAATACTGTATTACCTCAATACAAGAAGCACTGAAGGCAGTGATGGAGAAGAGTGGTGGTGGAGATGAATCAGCTTCTGGGAATGTTAAGCGCCAAAGGACTAATAACATCAATTTTCTTGAACAAAGATCTTTGTAA