Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14432 LG3 48102926 48105024 transcription factor HHO2 isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 48102932 missense_variant p.Pro3Ser
T/G 48102963 missense_variant p.Phe13Cys
A/G 48102965 missense_variant p.Arg14Gly
T/A 48103119 missense_variant p.Leu65His
G/A 48103196 intron_variant
G/A 48103274 intron_variant
A/T 48103308 intron_variant
G/T 48103411 intron_variant
A/T 48103452 intron_variant
A/T 48103701 synonymous_variant p.Ala144Ala
T/A 48103772 intron_variant
T/C 48103776 intron_variant
G/A 48103779 intron_variant
T/A 48103780 intron_variant
G/T 48103914 missense_variant p.Glu185Asp
A/G 48104061 synonymous_variant p.Lys234Lys
A/C 48104097 synonymous_variant p.Arg246Arg
A/G 48104302 intron_variant
A/T 48104498 stop_gained p.Lys262*
A/G 48104499 missense_variant p.Lys262Arg
A/T 48104503 synonymous_variant p.Ala263Ala
G/T 48104509 stop_lost p.Ter265Tyrext*?
G/A 48104664 synonymous_variant p.Arg290Arg
T/C 48104834 missense_variant p.Met347Thr
T/A 48105019 missense_variant p.Phe378Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14432.1
MIPVPQEEPSLDFRPSFVNNIVTDFLSHLSSIPNACNRMSLLQEFLTRLELELVKIQAFKRELPLCMFLLNDAISALKEELAKCRAFKAEPVLEEFIPLKREYEEKEDNEKEEECRNKNDWVSSFQLWNTEDEAYHRSKACRLEQKQKKSKGEERKSMEKDYFRHDSNRNVERGFVMPLSTYLATEEECVVDGLSLKTPATAVKNTREGRGSRISSCRVVSSAPSPMLLPQSGRKQRRCWSPELHHRFVKALEELGGSQAATPKQIRELMRVDGLTNDEVKSHLQKYRLHTRRVPAATAANCSISGADLGGLWMHKESLKGTSSCSPQGPLQFATKSGETTSTTEGDNMIDDDIKLEEFHIYSRTTHDYIKEDGSSERGF*


CDS Sequence:
>Vu_14432.1
ATGATTCCCGTTCCTCAAGAAGAACCAAGCTTAGATTTCAGACCCTCTTTTGTTAACAATATCGTCACTGATTTTCTCTCCCATCTTTCCTCCATCCCAAATGCCTGCAACAGGATGTCCTTGCTCCAGGAATTTCTCACCAGATTGGAACTTGAATTGGTCAAGATCCAAGCGTTCAAACGCGAGCTTCCTCTCTGCATGTTCCTCTTAAACGATGCTATTTCAGCTTTGAAGGAGGAGCTAGCGAAATGCAGAGCTTTCAAGGCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGAGAGAGTATGAGGAGAAGGAGGATAATGAGAAGGAAGAGGAATGCAGAAACAAGAATGATTGGGTGAGTTCTTTCCAGCTTTGGAACACAGAAGATGAAGCTTATCATAGGAGCAAGGCATGTAGATTGGAGCAGAAACAAAAGAAGAGTAAAGGAGAAGAAAGAAAATCTATGGAAAAGGACTATTTCCGACATGATAGTAATAGAAATGTAGAGAGAGGATTTGTTATGCCTTTGTCCACTTACCTTGCAACAGAGGAAGAATGTGTTGTGGATGGACTTTCTCTCAAGACACCTGCAACTGCAGTGAAAAACACAAGAGAGGGACGTGGTTCCAGAATCAGCTCTTGCAGGGTGGTTTCCTCCGCTCCTTCGCCCATGCTGCTGCCGCAAAGTGGCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGATTTGTTAAGGCATTAGAGGAGCTTGGAGGCTCTCAAGCAGCTACACCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGACGAAGTAAAGAGTCATTTACAAAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCTACAGCTGCAAATTGTAGTATCTCTGGTGCAGATCTTGGAGGCTTGTGGATGCACAAAGAATCATTGAAGGGTACAAGTTCTTGTTCTCCTCAAGGGCCTCTCCAATTCGCTACAAAATCTGGGGAAACGACATCCACAACAGAAGGTGACAACATGATAGATGATGATATAAAATTAGAGGAGTTTCACATCTACTCAAGAACAACACATGATTACATAAAAGAGGATGGATCTTCGGAGAGAGGCTTTTGA


Promoter Sequence:
>Vu_14432::LG3:48100926-48102926(+)
TAGTGATTGGATAGGATCTCCTTTTGATATAAGGTTTACATTCGAATATTGTGTCTCCATTGGTGGTAACTTGATATCTTAGAAAAGCAAGAAATAGAGTGTTATGACAAGATCTAGTATATAGAAGCAAAATAGAGAGTTATGGCCTTAGTCACTTGTAAACTTGTTTGGTTTAAGCAATTGCTTAGAGAGTCACAATTGAAGATGTCACTCAAATGACACTTATATGTGACAATTAGACTGCTCTTCATATTAGTTCTAATATTGTCTTTCATGAAAGGACCAACCGATTGAGATTGGTCGTCATTTCATTTGAGAGAATATTGTATTTGAAGATATCAAGACTATGCTCGTAAATTCAAGTAATCCGTTAGCAGTTATTTTCACTAAGTCTTTATGTGATCAATAATTGATTATATTTGTAACAAACTTGATACGATTTATATGTATAAGTATGAAGGAAAGTGTTAAGTATATTAAATTTTTAAATATCTTAAGTAGTTATTTTTATCTTTTATCTTTAGTTAGTTTGTTATTTTGGGTTTTAACTCATTTTTTTTTATTATAAACACAATAACTTATTATATATTTAACAGAAAGATAGATTAATCATACTTAAACTTTTTTATTATATTGAACAATGTTTTCTAAATATTTACCTGTAGAACGGATTCTAGTTTAAGAATTCTTGATTTTACGTGAAAAACAACAAACAAAAGAGTGAGAGAAAAAAGTATAATCTATGAAGCTTATAAAGTAATTAAGAACTCAGACCATAAAACTTGTTTTATCGCTTTGGTTTTAGTTTAAAAGGTTTTGTTACATCCGCTCAGATCTTTTGTTAAACAGGTTATGATATTGGTTTATATTATACATCAATAGGTTAACAAAAGTAGATATATTATTGATTAATGTAAATTTAAAAAATGTATAACAAAATATTATGATGAAGACCCTTAAGTATTTTTTTATTAATCATTTAATCAAATTTAAGAGTGAAATACTTCATTTGAGCCACAGCTACGCAGAGGCTACTTTTTTATAAAACAAAAAAGTTACATTAATATTATAATTTCACTAAATTACACAATATCTTCTATTAAATGCTTATAATATGGGAAAAAAATAGAAATACTTGCATAATTTAAAAAACGCCAAGATAATTAATATAACTTACACAAAAAGTATAAGTTTTCTCTTCTATTTTTCAATTATATATTTAATAAGACTGAATTTCCGTTGATTTTTTCAATAATTAATATCTCAGTTCGTTATTTTCAGTATATTTTTCCGCGCTAATTATTTTCTTTAACAATATTTAAACTCCGGCTGTTACTTAAAAAAAAGTCAAATTGAATCCAATATTTCAAGGAACAATACTTTTAAAATTAAAATTTGAAAAAAAAATATAATATCAGTAGGAATTATTCACTAATAATAATAAACAAAATTTGACTTTAATGAAAAAAAAACCTTATATATATATATATGCATATATATTATTCTTATTTTACTACTGCAAATTCCATTGTTATTAATTTTAACTTTCCTAATCACTAAGATATTTCATCGTCACATCATAATCTTAATAGTAATTATATAACAATAAAACATTATTATTTATTATATAATCATATTTTAATTTTTTTTACTGATGTATTATTATTATTTGATTTGAAATTCGTCTTTCAGACTTATCTGATTTGCAAATCACAATCAAAGTCTCTTCAAATATTCCAATTCGAAAGTCGAATCCCACCAATTCTGCAACTATAAATTCTCCGTTTTTTAATTCTTCTTTCATCTCTTCACTATTTCACTTCTCTCTCTTTCTTCTTCTTTCATTCCTTTCTCACTTTTTTGACTGCAAAATCAAATGACAAAAACAGAAGAATAATCTCGTAGCCACTGCAACTCACAAAACAAGAGAGAAAGAACAACCTTTTTTTATCATAAGAAGTTGCACTGTGACACCACCACCATCATCATCTTCATCATCA


Gene Sequence:
>Vu_14432(+)
ATGATTCCCGTTCCTCAAGAAGAACCAAGCTTAGATTTCAGACCCTCTTTTGTTAACAATATCGTCACTGATTTTCTCTCCCATCTTTCCTCCATCCCAAATGCCTGCAACAGGATGTCCTTGCTCCAGGAATTTCTCACCAGATTGGAACTTGAATTGGTCAAGATCCAAGCGTTCAAACGCGAGCTTCCTCTCTGCATGTTCCTCTTAAACGATGGTTCGTTTTTTTCTTGAAATAAAAACCACTTTTTGGACGTCTAACCAATGTTGGTTTCGACTAGTTCGTGAAGATAACACTCATATCTCACACGAACGTGATTTTCAGTTCTGTTTTCGATGACGGGCTCTGTTAGTGAGAAATCATTAAGTGTTTTTTTGAATGAACTATTGTACCTGTGACGATGCTGTGCGTATTCGGAACATTACTAACTCGCTGAAACTTTTCTTTTACGTTGATAAAGATTATGTTTTGATGGTTTTTGGCAGATGGGTTGTGTTTATATTCTCTTCATCTTTCCATGGACTAATATTAGTACTGTTCTTGCTTTTATGGTTGCAGCTATTTCAGCTTTGAAGGAGGAGCTAGCGAAATGCAGAGCTTTCAAGGCTGAGCCTGTTTTGGAGGAGTTCATTCCTCTGAAGAGAGAGTATGAGGAGAAGGAGGATAATGAGAAGGAAGAGGAATGCAGAAACAAGAATGATTGGGTGAGTTCTTTCCAGCTTTGGAACACAGAAGATGAAGCTTATCATAGGAGCAAGGCATGTAGATTGGAGCAGAAACAAAAGAAGGTAGTATTACAGAGATTGTTATATGTGTGTGGGTTCTGTAAAGTTGATGAATTTAATTTTGTTTGTTTTCTGTTATTTGGCCATGGCAGAGTAAAGGAGAAGAAAGAAAATCTATGGAAAAGGACTATTTCCGACATGATAGTAATAGAAATGTAGAGAGAGGATTTGTTATGCCTTTGTCCACTTACCTTGCAACAGAGGAAGAATGTGTTGTGGATGGACTTTCTCTCAAGACACCTGCAACTGCAGTGAAAAACACAAGAGAGGGACGTGGTTCCAGAATCAGCTCTTGCAGGGTGGTTTCCTCCGCTCCTTCGCCCATGCTGCTGCCGCAAAGTGGCCGGAAACAAAGGAGGTGCTGGTCGCCGGAGTTGCATCACCGATTTGTTAAGGCATTAGAGGAGCTTGGAGGCTCTCAAGGTAGGAGATTAAAACTAACATAACTTCAATCTTATCCAGGCACCTAACTAGTACAATACAACTATTTTTCTTCTTTGAATAGCAGTTAGCATTTTGAATCATGGAAACTGTGGTTGGGTTATTAAATGGATGAATTAGGTATTTGATGCTTGAATTGTGTGGATATGAAAATCGTCACTTCTTTTTCAGTTTGGATCAGCCAAGATTACATAGGAAACTGTACATATTGCATTGCATATGTATGTTATATGGTCACAGTGAAAGTTCTTTACAAACAGATTTAAGTTTGGAAAGTCATAATCATGTGAAATCTTAGTTCATAATTGTCTAATCTTTTTGTTATTTCATTGTAGCAGCTACACCAAAGCAAATTAGGGAACTCATGAGGGTTGATGGCCTGACCAACGACGAAGTAAAGAGTCATTTACAAGTGCGTTCGTGTTGTTCATTTCTCCCTGTGCCTCCTAATGTTTGACTTGAGATTAAAGCTTAGTAGATTGTTATTGCAGAAATACAGACTTCATACAAGGAGAGTTCCAGCTGCTACAGCTGCAAATTGTAGTATCTCTGGTGCAGATCTTGGAGGCTTGTGGATGCACAAAGAATCATTGAAGGGTACAAGTTCTTGTTCTCCTCAAGGGCCTCTCCAATTCGCTACAAAATCTGGGGAAACGACATCCACAACAGAAGGTGACAACATGATAGATGATGATGTAAAATCGGACTTATAACTCTGGAATGTCACATTCAAAACAAAAACATGGAAAAGGTGATGTCTAGATGTTTTCTCACCGTGAATTTTGCAGATAAAATTAGAGGAGTTTCACATCTACTCAAGAACAACACATGATTACATAAAAGAGGATGGATCTTCGGAGAGAGGCTTTTGA