Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14413 LG3 47927886 47933540 PREDICTED: B3 domain-containing transcription factor VRN1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 47928060 3_prime_UTR_variant
G/C 47928148 3_prime_UTR_variant
G/A 47928164 3_prime_UTR_variant
C/T 47928171 stop_retained_variant p.Ter435Ter
C/A 47928290 missense_variant p.Ala396Ser
G/A 47928410 stop_gained p.Gln356*
A/C 47928470 missense_variant p.Ser336Ala
G/T 47928562 upstream_gene_variant
T/A 47928719 missense_variant p.Glu282Val
G/A 47929222 missense_variant p.Pro145Ser
G/A 47929625 upstream_gene_variant
G/A 47929689 upstream_gene_variant
A/T 47929730 upstream_gene_variant
T/C 47929818 upstream_gene_variant
C/T 47929877 upstream_gene_variant
T/A 47929896 upstream_gene_variant
C/T 47929986 upstream_gene_variant
A/T 47930066 upstream_gene_variant
T/A 47930076 upstream_gene_variant
G/A 47930083 upstream_gene_variant
C/T 47930087 upstream_gene_variant
T/G 47930092 upstream_gene_variant
A/T 47930093 upstream_gene_variant
G/A 47930284 upstream_gene_variant
G/T 47930307 upstream_gene_variant
G/A 47930309 upstream_gene_variant
A/T 47930311 upstream_gene_variant
T/A 47930506 upstream_gene_variant
T/C 47930514 upstream_gene_variant
A/G 47930529 upstream_gene_variant
T/C 47930569 upstream_gene_variant
C/A 47930570 upstream_gene_variant
C/T 47930608 upstream_gene_variant
G/A 47930626 upstream_gene_variant
T/C 47930646 upstream_gene_variant
C/A 47930697 upstream_gene_variant
A/C 47930722 upstream_gene_variant
T/A 47930775 upstream_gene_variant
C/T 47930909 upstream_gene_variant
A/C 47930948 upstream_gene_variant
C/A 47930955 upstream_gene_variant
T/C 47931136 upstream_gene_variant
T/C,* 47931166 upstream_gene_variant
A/G 47931191 upstream_gene_variant
A/G 47931875 intron_variant
G/C 47931881 intron_variant
G/C 47932070 intron_variant
G/C 47932078 intron_variant
G/A 47932158 intron_variant
G/A 47932164 intron_variant
G/A 47932220 intron_variant
A/G 47932224 intron_variant
G/T 47932307 intron_variant
T/A 47932396 intron_variant
A/G 47932402 intron_variant
C/T 47932482 intron_variant
A/T 47932709 downstream_gene_variant
C/T 47932770 downstream_gene_variant
G/A 47932842 downstream_gene_variant
G/T 47933013 downstream_gene_variant
T/A 47933014 downstream_gene_variant
G/A 47933114 downstream_gene_variant
A/G 47933159 downstream_gene_variant
T/C 47933234 downstream_gene_variant
G/A 47933246 downstream_gene_variant
T/G 47933319 missense_variant p.Asn13Thr
T/C 47933437 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14413.1
MARPCFHKLVLSNTLQSRQLRIPDIFLRKYGTQLSTVATLTVPDGSIWRIGLKKADSKIWFVDGWQDFVQRYSIGVGYFLVFMYEGNSSFIVHIFNLSTSEINYQSAMRNHMEGPCFVNYNHIFEEMEDIDSIDLSDLSPSYLTPGAMQNKGFAGSVDQLTPGKSHTPALQNLFNGGSKLNRVNWGDGGSSYSSKSANSQGSQSTRDIGVQFNAVEFKRSTDELKLRYSNEEAVNKTAKKKRKSESQGEEPSGENEEEAEMRYRFYESASARKRTVTAEERERAINASKAFEPTNPFCRVVLRPSYLYRGCIMYLPSCFAEKNLNGVSGFIKLQLSNGRQWSVRCLYRGGRAKLSQGWFEFTVENNLGEGDVCVFELLRTKEVVLQVTVFHVTEDASLLNSPPVQQLSQNMSHTKLLNPHLQHRVSSTVKLIRN*


CDS Sequence:
>Vu_14413.1
ATGGCTCGTCCTTGTTTCCACAAGCTTGTTCTCTCCAACACTCTTCAATCCAGACAACTGAGGATTCCGGATATTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAGTTGCTACCCTCACTGTTCCTGATGGTAGTATTTGGCGTATAGGATTGAAGAAAGCTGACAGCAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTCCAACGGTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTTATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCGGCTATGAGAAATCATATGGAAGGACCCTGCTTTGTCAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTTCGTATCTTACACCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTGAATCGTGTAAACTGGGGTGATGGTGGGAGTTCTTACTCTTCTAAGAGTGCCAATTCACAAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGATGAATTGAAGTTGCGTTATTCTAACGAGGAAGCAGTCAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTGCGACCCTCCTATTTATATAGAGGATGCATAATGTACTTGCCTTCTTGCTTTGCGGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGTCCAATGGCAGACAGTGGTCGGTTCGCTGTCTCTACAGAGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACCGTGGAGAACAATCTGGGGGAGGGTGATGTATGTGTGTTTGAGCTCCTTAGAACAAAGGAAGTTGTGCTGCAAGTTACTGTCTTTCACGTAACTGAAGATGCAAGCTTGTTGAACTCTCCTCCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAACATCGCGTCAGCAGTACAGTGAAATTGATTAGAAATTAG


Promoter Sequence:
>Vu_14413::LG3:47933540-47935540(-)
TCAATTCAGTCATGTATGAAACAAGCAAAGTGATATAGTCTTTTTGCAAAAGAGCATGGTTTACTACATAAAGGAGCACGACTAAGCCAATTTTAATGTAGAAAAGCACGATCTGATGAAAGGAAACCTGATTTTAGTGCAGAACATGCTTGGCCAAGCCAATTATTATGCAAATCAGCATGGTTCAGATGGAATTGTGCTGAAAACCAATCTATTATTATAATGTACACAATACAACACGTTCTTAATACAAAAAGGAGCATGGCTAACACATTTTTTTATCCCTATCAACATGATTAATGTAAAATTATACACCCCATAACAAATAAAATGACACATCATGGTAATCACACAAATAAGTGAAGGTTAGTTCTCCTTACTGGCCTTACTCGAATCTTCCCACCTACTTAGAATCCTTAATCCAACATATGATTATCACACTTTATCAACAATGTTCACACATAAAATTAAAGAGCAAGGATATACATGCCAATTTTCAACTCGGCCCGTGGTAAGCTGGGTTGGTCCACCAACCCACCTAGTTTAATTTAATTATTTATTACTTTGTGTTTCAATATTATTAGTTAACACTTTTTTTATTGTATTGTAAATGTGTATAAATATGTTTCAAGAGAGAAAAATATTATAGATTTATCCATTCAATACTCTAATCTTATAAATGTATAAGGGATGCAAAAATGATTAATATTAGAAACTTATTTATTCCCTTTTTGAGCTTGCTTTTGGATTATATTTGAGTTGTATGTTACTTTTTATTTATTTATTTTGAATTATCTTTGAAGTTTAACATCGTTTTAGAGTGAATATTTAGATTTGAATTAAAAAAAATGTAATTTATTTTTACTTAAAAAAAACTTGTAATTAAGTGAGTTAGTAAACCAACCCGTTTAACTCATCAACCGTGGTGGATCATATTAGATTCAAATTTTTTGGTTTGCTAATAAGTGAGTTGGGTTGGGTTGGCTCATTAAGTGGTCAACTCATGATGGGCTAGCCCGACCCAGGTGATCTGTTTTGACAACACTAGATATTGATGAATGGTCCAAAAAGTCTGATGGTAATAATCTAACAAACTTGATTATGATGTGTTCGAAATGAAATTGATACCATGTAAAAGAGTAAGATGATTACTTTTAAGATAATTTTCATCTCACTTTTATTTAAATAACTAAATTGAAAACAAATGTACATATTAAAAGAACAAAAATCTTCTTTATATATAAGTATCGATATATATATGTATAGATTAAATAGTTATTAATTAAATTTTGAATGAAAAGATAATATAATTTTTCTATCGAGAATATTTTGATTACAAAATTTCTTTTAATTTTATATCTAAAATATCTATAAATAATAAGAACTGAAAAAAATGTTAAAAAATTGTGAAGTATATAAGTAAAAAAACATGTTTTGGTAGACATAAAATGTGCCTAAACTGTAAAAATATATATAAAAAAATTTCAAATATTTATTCAGATTTGTCAATAACAAATTTAAAATTTCGTTACTTATATTTAACAACCAATCAATGTATAATTGTTACTATTAGTATAAAAAAGAGTAACAATTTTCTTCATTCACCCCTAAATAAGAAAAAATAATCTCTATATTTATATTACAAACCAAAGTTTTTCTCTGACAGGACAAAGTTTATTTTTTTAAACTTTAGTATAGTTTTTGTTTATTTTATATTTTCTAGAAAGTTTAGCACTTTACTTCAACCTGATTGAGCATATAAACATTTTCCTTTTGTATAAACAGCTTTTTCATCTCAAATTTTAACCGCTTGTACGCGTAAATTAATTAGTTCAAAAAGTAATATAATTATTATTATGTATAGATAAATCAGAAAAAGGAAATGATAAATATTATCAGTCATTTGACACTTACAAGAAATGTTAATAAAGGGTCTGAGTTGACTCGGGCGAGTGGTGCACTCGTTGCTTTTATTTAGGTCACAGGGTTGGGGTTTTTTT


Gene Sequence:
>Vu_14413(-)
AAGGTTTAAAAATCCTAGTTTGACTCAAAAGCAGGGAAGGGTGGAGAAGAAGGTGAAGAGTGAGTAGATCTGACTGTGAAGGAAAAATCCTCCCGAAGTTTTCATCTTTCAATTAAAGGGTCTTCAAATAATGCTCTGAATCTTTCTTCTTCTTCTTTTCTGTTACCCGTATCACTCTCAGACAATGGCTCGTCCTTGTTTCCACAAGCTTGTTCTCTCCAACACTCTTCAATCCAGACAACTGGTATATTTTTTTCTCTCATTCAAATGTTTCTTATTTTTATTTTTTTATTTCGTGTGGAATTGATTGTACTATATTGTTGCTTTTAGGTTTGGGGTTGTTTGTGAGTGTTGCATGAAAAAAGCTTTCTGGGTCTTTGCTACTTTTTCTGACACAACTTTTTCACCAATATTGGGATTCTTGACCCTTTGCATTTGTGTCGGGGTGGGGGCTGTTAATGGATTTTCTTTAGAGATTCTGATAGAAGGATGGTGCTTTCAGTAAGTTTTGTGGGTTTACAAAAGAACCTTTCTTGAAGGTTTTATGATTTCTTCAAGAGTTGAGCTGAGCTGAATGTTGGTCCTGGAATTGATAGTGGGTTTGGGTTAGTTTACTTAACACCATGCATGCATTAGATATAAACTTTACAATTTTATTTCGTTTGGTGTTCTTAATTGAACAATCTCGCCTATAATTCCTTTGTTGCTGTTTTTTGGAATTAATTCATAGTAGTGGAACAAGAAAGGAGAATTTTAGCATAGTTATCAATGTTGGTGGATAGTGATTGATCCCAAACTTGTTATGACGGTGTAGATGGACTGTAATTGTGATTTTTTTTTTCTTTTTTTATAATTTATGTTTTGCCATGAACAAATAAAAGCTCAAAGGTACTCAAAATTCATGATTTCATGATACATTCATAATTGACAATAAGAAGTCATAGGTCTAAAACAAAGCATACAAGTAAGCAACAACAAAATTCAAGGAAATAATGTATCTCAATTCTTAAAGTTTCAAACATTTAATAAAATCCCTACCAGAGGAATAACAGAGCGAAGAGTGAAGGGTGGGTGTTTCTAAAAATTGCCAGGGATGATGGGTGGCTCTCTATTTGAACAAATAGAGGCAGCCTCAGAATAGAGAAGGTATTGAGCAGATACATACAGTAAATGTCAACTTAATGATCCCAAATACATTGGGAAAATGGAAATATAAAATGAATTAGGATTTAGCAGTTAGAACTTGGGGCTTTACTCTCCATAATGCAATAGTGGTGTCTGTGAATAGAATGATATTGTCTGTGAATAGTGATACATTGTCTGTAACATAAAAATTCTTGCTAATTGAGATCTGTACTATCCTCTACTAGAGATATCGATTACCCTTATTAAATGTTGTTATGGGACAAAATGCCCATATAATCTTTGTTTTGCTCTTTTATACACTCAATGCTTTCGAATGCTGGGATACTGTTGTGGATTCTTGGTAAAGAGGCATTAGTGGGGCATGGAGTGTTGAATTTTGTGTGGTGGCTTATGGTTTCTGCAATTGGCTTGACAACCATGGTGGAGGACACATCTCTAAAATGTTATTGAATGGACAAAGATGCTAAGTACTACAATTTATTTAGTTTACTTTTCAACCCCTGAAAAATCACACCCTAGTCCTCATGTGACCTTTTGTTTACTGAACTCCTTGCTTATGTGACTCTTATTTCCCATTCCAGAGTGAAAATAGACTTCCACTTTTGTGAAACAAGGTTATTCATTCTCAAGAGATCAAGGGCATTCTCTTCCTTCCCAGTCACAACGTCCTCTTGATCATAGATAAATTGTGTGCAAAATGCCACTATTGTACTGTTGCATGTACCTCTCGCTTCTCCTAATGTCCTCGTTTTGCAGTTTGCTGTTGCAGTTGCTGGAGCCCAAATTGCAACACAAATTGTGCTTCTCATCATGACAGAGCAGCCACTCTAAATGTCTCAGTGCAGATGGTTTTTCACTGACAATAATGATGGGGGAGGAAGGATGGTGATGATTTGGCTGCTCCAACAAAGGCTTTGTTATCACTACCAATTTTGGACAGTCTATACCACCCACCCTCACCAACTCCCACTCCTCCATCTGCAACGTCTTCCTTAGGGAGTTAGGGTTTTATAATGACAGGGTGACACTTATCTAACATCTGTGCAGTCCCTGGGGGTTAGGTTTTCAGGGGGAATTAGGCCATGTGGTTCAAATGTTTTTGTTTTTTTAACTCTTCATTTTTGTTTTGGTTTGTCGTGCATCTAGTTAGGCCTAGTTTAGTGTCTCAATTTCTGTTTTTATTTTATTTTATTTAAAGCTTAATATGTACTATAATAATCTAAATATAATATAGTAAACAGTAATAGTGATTACAATCATAGGACGTAATCAGGGTTATAAATAGTGCCCAATAACAATGTAGTGGTTGTAGCAGATCAATAGTTGGTGCCATAGCAGGGCTTGTCTGGAGGGCTATTTTAAGAACTTTAGATTCCAAAGTTGAAATCTATGTATGTAATACTTGTGAAAATGATAAAGAAGACTTTAATTTAGTAGATGATGACTTATAATTCTTATCTAGGAAACTTGTATTTGACTTCTGTTGGTTTTCAATTTTCTGTTTTGTTTGACACCTATGACTTTTTATTGTCAATTATGAATGTTATTAATTTGAGTAATTTTTATTATTTTGAAAACTTATGTCTACAGTATACATTATATAAACTATAGAAGTTATCATAATACTGTGGTTTTCCTGCTATACTCCATCTCATAGTAGGGTTTTTGAAACTTGCCACCATGTATGGCAATTAAAAGCATTGCATGTAATAAAATATAATCAAGTAAATGACAGAAGTAATAAAAATAATGTCAGAATAGCATTTATCCTGCTATAGCAGTTTCGGGTTTGGCTTGTCCACACTGCTTGGGAACTATCCTCTAGACATCACCAGAAACTCTCCAGGGAATCTCAGACTCATAGATAGTGATACTCTTCTATTGTTTTAGTTTTTGTTTCCATCCATCTTCTGCTCTCTTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTTTATTCCCTTCCATTTTTGGTCTTTCTAAATTCTAACCATGCTCTTTATCTTTTAAACAAACAATAAACAAATTCAATTATTGTTCTTTCAACAAAATTATTTAAACAAATTCTTGTGTTCTCTTTTATTTTCCAATTTTACTTTCTTCCTCTATTTTATTATTTCATAAATTTTGGTTTTTTTATTTACAAATAAATTTCAAGACAAATAAAATCTATTCTTTTAGTGAACTTATATGCTGTGCTACTTCTGCTATTATCCCGCTAACTTGTAAATTGGGGAGTTTTATATGTTTCTAATTTGTCATCTATTTTTCATTTTTTCTATATTGATTATATTTTGCTGCTTTGTTATGTAAGTTTTGTATTTTTTTCTTCCTCCACTGTAATCCCAATCCCATCCATCTTAATTTTTGGTTGTGGATTTTGGGCTTGCCGCCATTGATAACATTGCATACACTTTAAAGTCTTGCTTGTAGAATTATTTCTATGACAAAGGTTTTCTAAATTGCAAGAGATAATTAATCAATGATAATAGGAAATTAAGTAAATGAGGAAACACAGGTATAGGGAAGCTGTACAAATAAGAACAAAAATAGTACTGTGGCTAAATAGGCTATATTTCCCCTTGATTGGAGATACCTTCCAAGCTCTGTTCATGAAGGTGGGGATGATGAGGTCCTGTTTAGGAGGTGATGGTAGGGCAGGATCTGCCCATTTTTCATTTCATTGTTGAATTTCCTAATCTTATAGTTAGTATTATCATGACATCTTTAGGATTGTATTATGAGTTTTTGCTAGTATCGGGAACCTAACCTTTATATTTGCATTTCAGAGGATTCCGGATATTTTTCTGAGGAAATATGGGACCCAGCTTTCTACAGTTGCTACCCTCACTGTTCCTGATGGTAGTATTTGGCGTATAGGATTGAAGAAAGCTGACAGCAAAATTTGGTTTGTTGATGGTTGGCAAGATTTTGTCCAACGGTACTCCATTGGTGTTGGATACTTTTTGGTGTTCATGTATGAAGGGAATTCATCCTTTATTGTTCATATTTTTAATTTGAGTACCTCTGAGATAAATTATCAATCGGCTATGAGAAATCATATGGAAGGACCCTGCTTTGTCAATTACAATCATATTTTCGAGGAAATGGAAGACATAGATTCCATTGATTTGTCAGATTTGTCACCTTCGTATCTTACACCTGGTGCCATGCAAAACAAGGGTTTTGCAGGATCTGTAGATCAACTGACACCTGGGAAGAGTCATACTCCAGCTCTGCAGAATTTGTTCAATGGTGGCTCAAAACTGAATCGTGTAAACTGGGGTGATGGTGGGAGTTCTTACTCTTCTAAGAGTGCCAATTCACAAGGTAGCCAGTCAACCAGAGACATAGGTGTTCAGTTTAATGCTGTTGAGTTTAAAAGGTCCACCGATGAATTGAAGTTGCGTTATTCTAACGAGGAAGCAGTCAATAAAACTGCAAAAAAGAAGCGGAAATCAGAGTCCCGTAAGTTTTTATCCCAGTTCTCTTTCTGTGTAGTAACCCAAAAGATGACTTTTTTCTTTTTATTACTAATGCAACTTGTGTGGAACTATAGAGGGCGAGGAACCCTCAGGTGAAAATGAAGAGGAGGCAGAAATGCGCTATAGGTTTTATGAAAGTGCATCTGCAAGGAAAAGAACAGTGACAGCAGAAGAAAGAGAAAGGGCAATTAATGCATCAAAAGCATTTGAACCCACAAATCCTTTCTGCAGAGTTGTCCTGCGACCCTCCTATTTATATAGAGGATGCATAATGGTGAAATGTTTTTGAACTTGATATTTATCATTATTCTTCTCCAGCATGTTATCTTGAATACTCAATTCCTGTTTTTTCTGTTTTTCAGTACTTGCCTTCTTGCTTTGCGGAGAAGAATCTGAATGGGGTATCAGGATTCATTAAACTTCAGTTGTCCAATGGCAGACAGTGGTCGGTTCGCTGTCTCTACAGAGGAGGTCGAGCCAAGTTAAGCCAAGGATGGTTTGAATTCACCGTGGAGAACAATCTGGGGGAGGGTGATGTATGTGTGTTTGAGCTCCTTAGAACAAAGGAAGTTGTGCTGCAAGTTACTGTCTTTCACGTAACTGAAGATGCAAGCTTGTTGAACTCTCCTCCTGTGCAGCAGCTGAGCCAAAATATGAGCCACACCAAACTCTTGAACCCTCATTTGCAACATCGCGTCAGCAGTACAGTGAAATTGATTAGAAATTAGCGGGGACAGTTAATCCTGATAGCCAGTCTGTGATAAATAGACCTTGCTTCTGAGTGATCTGTTGTTCATCTAATTCTTCACTTAGAACTTTGATGCTTTACATGTTCATAAACATTTGAACTTAGTTGTCCCAGTTCTGATACAAATATATTTCGGTTTTGACTTGGGTTGTAAATAGATTGTTCAATCTAGTTGATCAAAAACTGAGTTGAAATGCTTGTGCTTCAGCTGTTGTTATTTTATTTTATTTTGAAATTTTATTAATTTGTAGCTTCATTATACTGC