Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14401 LG3 47843768 47849125 PREDICTED: G-box-binding factor 1-like isoform X1
Map

Annotations  
category   relationship type   keyword
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
A/G,* 47843889 downstream_gene_variant
A/G,* 47843895 downstream_gene_variant
A/G 47843898 downstream_gene_variant
A/C 47843981 downstream_gene_variant
G/C 47844058 downstream_gene_variant
C/T 47844068 downstream_gene_variant
G/T 47844131 downstream_gene_variant
G/A 47844212 downstream_gene_variant
T/A 47844216 downstream_gene_variant
G/C 47844223 downstream_gene_variant
G/T 47844328 downstream_gene_variant
C/T 47844423 downstream_gene_variant
T/A 47844429 downstream_gene_variant
G/A 47844526 downstream_gene_variant
C/A 47844571 downstream_gene_variant
A/C 47844638 downstream_gene_variant
G/A 47844643 downstream_gene_variant
T/C 47844865 downstream_gene_variant
A/T 47844884 downstream_gene_variant
A/G 47844887 downstream_gene_variant
T/C 47844941 downstream_gene_variant
A/T 47844954 downstream_gene_variant
A/C 47844963 downstream_gene_variant
G/T 47844972 downstream_gene_variant
C/T 47845049 downstream_gene_variant
T/C 47845058 downstream_gene_variant
G/T 47845119 downstream_gene_variant
C/T 47845144 downstream_gene_variant
A/G 47845149 downstream_gene_variant
C/T 47845173 downstream_gene_variant
T/A 47845324 downstream_gene_variant
C/T 47845534 downstream_gene_variant
T/C 47845642 downstream_gene_variant
C/A 47845646 downstream_gene_variant
T/A 47845724 downstream_gene_variant
G/A 47845794 downstream_gene_variant
A/T 47845810 downstream_gene_variant
A/G 47845961 downstream_gene_variant
G/T 47845971 downstream_gene_variant
G/C 47845981 downstream_gene_variant
T/C 47845984 downstream_gene_variant
G/A 47846077 downstream_gene_variant
C/A 47846365 downstream_gene_variant
T/A 47846565 intron_variant
A/G 47846631 intron_variant
T/C 47846684 intron_variant
T/C 47846717 intron_variant
A/T 47846782 intron_variant
A/C,* 47846910 intron_variant
C/T 47846969 splice_donor_variant&intron_variant
G/A 47847143 intron_variant
G/A,* 47847248 intron_variant
T/C 47847344 intron_variant
G/T 47847390 intron_variant
G/A 47847475 intron_variant
T/G 47847508 intron_variant
T/C 47847558 intron_variant
G/A 47847745 intron_variant
C/A 47847788 missense_variant p.Leu144Phe
G/T 47848009 intron_variant
A/T 47848046 intron_variant
G/T 47848071 intron_variant
A/T 47848091 intron_variant
T/C,* 47848485 intron_variant
C/A 47848509 intron_variant
A/G 47848556 intron_variant
T/A 47848584 intron_variant
G/C 47848641 intron_variant
C/T 47848663 intron_variant
T/G 47848965 missense_variant&splice_region_variant p.Gln21Pro
A/C 47848993 intron_variant
A/G 47849005 intron_variant
A/C 47849076 missense_variant p.Val17Gly

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14401.1
MGTQKSNMFDTAYNYLVPEDQEILDKPTHWTPMQAYNNSASTPIPFLYQHAAGYMPLYMWPNQANSTVLQSNVLQDPMKLSNKPTVSEDAVLAFSEIVHRTFGEQNLNSIKKCARNLQPKSLIPKESRGDRSKSSILKNKDRVLCSEAYENKGSLHEDLVTANDFPSTKKQHCNLMLENASSIQLNQDLETGLDAIGTNTELVKLEEDEIRRERKRQSNRESARRSRMRKERECEELQKKMEILKDENSMLTQRLKSLSEECLEICNENDAIEEELVNMYGTESISYLLDMKPR*


CDS Sequence:
>Vu_14401.1
ATGGGAACACAAAAATCTAATATGTTTGATACAGCTTACAATTATTTGGTGCCTGAAGATCAGGAAATTCTTGACAAGCCAACACACTGGACTCCTATGCAGGCATATAACAATTCTGCGTCTACTCCGATTCCCTTTTTATATCAACACGCAGCTGGTTACATGCCTCTCTACATGTGGCCAAACCAGGCAAACAGCACAGTACTTCAATCTAATGTTTTGCAGGATCCAATGAAGCTCTCCAATAAACCTACAGTATCTGAGGATGCTGTACTGGCCTTTTCAGAAATAGTACACAGGACTTTTGGCGAGCAAAACCTAAATTCAATAAAAAAATGTGCTAGAAACTTACAACCTAAAAGTTTAATACCTAAGGAATCAAGAGGAGATCGAAGCAAATCTTCGATACTGAAAAACAAGGATAGAGTGTTGTGCAGTGAAGCATATGAAAACAAGGGATCACTACATGAAGACCTTGTCACTGCTAATGATTTTCCTTCAACTAAGAAGCAACACTGTAATTTGATGCTTGAAAATGCAAGTTCAATCCAACTGAATCAGGATTTGGAGACGGGCCTAGATGCAATTGGCACTAACACTGAACTTGTGAAGTTGGAAGAGGATGAAATAAGAAGAGAAAGAAAAAGACAGTCGAATAGAGAATCTGCTAGGAGATCAAGGATGCGGAAAGAGAGAGAATGTGAAGAGTTACAAAAGAAAATGGAAATTCTTAAGGATGAAAACTCCATGCTCACACAAAGGCTCAAGAGTCTTTCTGAGGAATGTCTGGAAATCTGCAATGAAAATGATGCCATAGAGGAAGAGCTGGTTAACATGTATGGAACAGAATCAATATCATATCTGTTGGACATGAAGCCACGCTGA


Promoter Sequence:
>Vu_14401::LG3:47849125-47851125(-)
ATATATATATATATTAATTATTGTGTGTTTATTATTAATCTTATACCAATTCTCACAAAATATTTATTTAAATCTAAAATAAAGTAAAAATAAACGTATTTTAAATAGATACACAAATTGTTTGAAATAAGTATAACGTAAAAATTAATTAAACATACAATACAATATGAAATATTTTAAAATAGTAAAATAAAACAAATATTTCGTATACTAATATTAATATGTCGAACTATATCTCGAAGTAGTAAAGTATATAATATAACAGATAAAATAAATTATATAAACTAAAGTTTATTTAAATTATAATATAAGTAAATGCATTCGTGCAATTGTCAATATTTTACTTATTAAGATTAAAAATAAAAATTTTACCTTATATAAGACAACTATAGAATAAATAATAAAGTTACGCTGTATGAACAAATGAAAAATAATATCTTATATATGAATTTATTTATAACCTAAAAACAAGTGGCCGTAGATATTATTGAAAATGACGGTTTGATTTTCGCTCAATTGTAAAAGAAAAAAAAATTATTTCATTATGAAACAAATTGTAATCCTATTAATGAAGAACCATATAATTTCCTCTACAATTCAAAATAATAAAACAGTGCTTCCGTTCTATTTTTCTATTTATTTATTAATTAATACAATATAATACACTCACTCACAACACACTAGTTTGTGTTTCGCGCCACACAGGTCTTCTTCGTCTTTCCCTTTCTTCTTCTTCTCCTTCTTCTCTCTCTTTCTCTCATGCGCTACTCTTTCAGTTCTGCTAGATTTGAAGCTTTCATTTCACCTTTTTAGATTTTAATTGCTTCAATTTTTTAATTTGTTTTTGTTTGTTTCCCCTTATTGCTATTGTTCAATGATTCAAACGTGTTTGTTATGTGCTTTATCTTCTCGTCTTTTCTATGCTATCTTTTTACCCTTTTTCGTCTTGTAGTTTGTAGAATTTATTTTATTGGAGAATTTCCGACAGTGCAATTTTCATTCTGTGAGCATCTTTGCATTACAAAAATTTGGGAATGTGTTTGCATTTATGTTCTTGGTTTTTTATGGCAGTGCAGTGTTTATTCTTTGTACAGAGGGTTCCCTCATTATGCCTGTCCGTGTTGAATTGAAAGGAACAAAAATTTGGGGGCAAGGGAGAGAACAGTTTCAATTTTATATTTTTTAAATGGAAATTAGTTACCTTTATTATTTGTTTGGATATTATTTGGGAAGCGTTTTGAAGAGTTCATTGGGCCTATGGAAATAGTGTCATAACCTTGTAAATTTTTTTATGCTTATTTCAAAAATTAAGATCCTTAATTTATTATAGGAAGCTTCGTAGTTAAGCTTATAGTTGTTTTATAAAAGTTATGTTTGGATTAGCTTCTCCATAGATCCTTTTCGGGAAAAAAATTAAGAAGAAAATGATCAATTTGACTTATCCATAAGCTAAATTAGCTTATGCACAGGTTTTAAAAAAAATAGAGAAACTACAAACACACAAAAAATAGAGAAAATATATATGAGAAAAACTTTCACAAATTAGTACATGTTGTATAAGCTAATTTTTCTTTTCATTCTTTTTATCTTTAGAGAGCTTATTGGGAAGTTCGTTCAAACTAGCCTACAAGATTTTTCAAATAAGTACTAATGAAACAGTTATTCTCTTTGTTTCTTGAAAGTTTGAATGGATGAAACTTGATCATCCATTATCTGCCAATGCCAATTTGAGTGGGTGTGTTCAATTAATTGATGAAATTCAACTTTCAATCTAGTTTACCAAATATTTCTTGACAATTATCCTTCTGAAGAAAATGCATTCGAAGAAAAAGGATCGTGGTCTTATGTTGTTTGTATTTTTCTTTAGCACAGCTTGCTCACATTTTTAAATGAACCCGTCCATGTTCATTTATGGATTCTCATTCACTTGGTATTTTATTTTTAATTTAAAAGTGGTTGTTCATATTGAAAGGTACTGAGTTAGAAGCTTCTCAAGCGTG


Gene Sequence:
>Vu_14401(-)
ATGGGAACACAAAAATCTAATATGTTTGATACAGCTTACAATTATTTGGTGCCTGAAGATGTCAGTAATCATGCCAATGCCATCTTAACCAATTTTCTTTTTCTGCAATCTGATTTTAGCTAACATTCTAATTTATTTTATTCTATTTTTTGTTTCTAGCAGGAAATTCTTGACAAGCCAACACACTGGACTCCTATGCAGGTGAAAAACATTTTCCGGTTGGAACCAATTTGTGTTAGTATTTAGATCATTCATACTTGGTGTTTGTCGCGTATAAAAAAGTTGACTGTGTACATCTCTTTTAAATAGGCATATAACAATTCTGCGTCTACTCCGATTCCCTTTTTATATCAACACGCAGCTGGTTACATGCCTCTCTACATGTGGCCAAACCAGGTAGTGATATACGTAATATTTTCCTATTATATGAGGTTTCTTTCTTTGCCTACGACAAAGGGACACGTTTCTCATAGGAACTGAGATACTAGTTAGTTAATAAAGGGGCCATTTATGAATTGGCTAGCTAATTATCAGGAAAATTATTGTTTTTGTACTAGAGCAGTTCTGTATTAGAAATTGCATGATGGCAGTTACGCATAGAAAATAATTGTTGACAGCTATTTATTAGGAGTGTATATATATGTGTGTGTGTGTATTTCATAGTAGGTTTTGTAATTAGGAAAGGTGTAGTTATTTGTGGTTGGTAGCCACTCTCTATAGGAGACCGTAGTCTCCGGAATAACAAGTGTTGTACTGAATTGTGTGTGTTATTTCAGTGTTCAATACAATATTTTATCAGTTTATCAATTGGTGTTCTATCAGTTTCACCTTTCATTTTCACATTCTTTGTTGTTTGGTCCAGGCAAACAGCACAGTACTTCAATCTAATGTTTTGCAGGATCCAATGAAGCTCTCCAATAAACCTACAGTATCTGAGGTAATCCTAAATCTTTCAATAAATTTATACGGAGTACATAAAATATTTTTTCCAACCATAATTTCTATCAAATTCTAGTTTGCAGTTGGTGCAGGTTTAATAGAATGTGTACTCACACTCTTGTAGGATTAAACTTAATTTTTCCCTCTTACAGCAATTTCCATGTTGATCAAGTGTATCTTTTCATATATTCGCTGATGCATACAGTACAACTTCTTTTTCATTTCGGTCAGGATGCTGTACTGGCCTTTTCAGAAATAGTACACAGGACTTTTGGCGAGCAAAACCTAAATTCAATAAAAAAATGTGCTAGAAACTTACAACCTAAAAGTTTAATACCTAAGGAATCAAGAGGAGATCGAAGCAAATCTTCGATACTGAAAAACAAGGATAGAGTGTTGTGCAGGTACGTTTTGTTCTAGGACTATTTTTATCATATTTGTCCAAACCTAAATAAAATATAAAATATTATTTGTGCCACAGTGAAGCATATGAAAACAAGGGATCACTACATGAAGACCTTGTCACTGCTAATGTATGTCGTCCTATTTTTTTTTATTGAGGTATATTTATATGGCTGAGGAATGCAATATGTGTTCTATTACTGCTACGATTATAGAACATTTGAAAACTGGTTACTTAGTAAAGCTTAAAAATTCACTTTTTTATTGTGTAGTTCAAGATGCTTAGAATCTTTGGCTGAGAAAGACTGACGATATCCTTTATGTTGCAGGATTTTCCTTCAACTAAGAAGCAACACTGTAATTTGATGCTTGAAAATGGTATATATTTTAAGACCATAATTTTTTCTCTTGGTTGTTTGAACAATGGAAATTCATGTTTTATTATCTGATATTTCAAAACAAGGAAGATGCATAGAATGTTTTTCTTAATGAAATTCATATTAATTCTTAGAATCTGGCTTTTTGACCCAACGCGACTTCACATTTAACTTGTAAGGTGAGGACTGCTTAATCCCTATTATAAATAATACTTTGGTCATATCATTAGGTGATGTGGGACTAAACACATTCCCTACCCAGCACAATAAAGGTGCTGGAGGAGACTGCAACGAAGGCAGCCCAAAGAAATGTAACTAAGGCAGTTTTCCAATACTAACAGTCCTTCTCATTACTCTGCAGCAAGTTCAATCCAACTGAATCAGGATTTGGAGACGGGCCTAGATGCAATTGGCACTAACACTGAACTTGTGAAGTTGGTAAGCCAAACTTATATAGATTTTACAGTCTGTTTGATTAACTTTTATTTGTTAGATTATCAAAAAGCAAGAACAATCAATTTATTAATATAAATTGCAAAATCCCTTTTAAATTATTATGCTGAAAATATATGCATATATAAAAAGGTTTTGTTGATGTAATTGTGCTTTTGTATCTTAAACTACATATTCAATGTTGAAATATATTATGAGCGAAACCAAAAGAAAGAAAAGGTTATACGAACTAACTCCATCTATTTTTCTCTTCTGTATAAGCCATTTATAATTAACAAAGTAGCAAACATGACTGTAGAGTTAAAATGGAAACGAAATGTTGATTGTCAATAGACACAAAATGATATTATCTTTGACAACCCCCTAAACAAGTGCCCTTTAAGCTTGAAACATAGACAATTCGTCGGTTGATTCTACCATGTGATCGGAAGATATCATAATGTCTTGGATAAAACTCAAGCATTTAGACAAAGCCACATGAATGTTTTTTCACCTCTAACATTGATATTCCACACTTCATTCCATTCAATTGAGCCTTTCACGTGAAATGCTATTTCCGTATTACTTTTAGCATTCTAGCTGCAAATGTGCATGTGTTTAATTCTTGACCATGTTACCGTGTCTACTATGTCATACAGAGGTGTCTTTCTTTTGACAGGAAGAGGATGAAATAAGAAGAGAAAGAAAAAGACAGTCGAATAGAGAATCTGCTAGGAGATCAAGGATGCGGAAAGAGGTAACATACATACTACTAAAATATTGTGGATATAAATTATGGAGATATGGATAAATTAGAAATGTTATATCTGTTCAGATTTGTTGGTTCAAGGTAAGAGGAACAAATATGAATCAGATCAGATTTATTATTTAGCAATATCTTTATTATTTTCTTTTTGTAATTTGTAGGATATTTGTTTCCGGTTAATGTGTGATTTATTTTTCTTATTTGTAGCAGATTTGATCTGCTTAAATACAAGTTGTATCTTTTGTTATTGGGATCAATTAAATAAGATAATATTTAATTACAGATTTTGTGGATCTGTTGTTGCTATATCTTTAGAATTACAGAAAAATATGACATTGTTCTATGAATTCAAGAATAATTGAAAAGGTAAAATGAAGTTTCTGGTTCATTTCCTATGTTTCTAACTTAAGTATTGCTTGGAAGTTTTTCGTCTAACCTCTGTACCCTTTTCTTTTATATTCCCTAAATAAATTAGTATCTTTTGTAATGATCTAAGCATGATTAAGTAATCGAAATCAAATACAATAATTGTTTTAATTTAAACAATTTGTCCTAATCTTTTTGCCTACTTCACATTTTATCTCCATCTAGTTTCTTTTTGTTTTGTTGTTTTACTTGTGATCATAGTTGTCAAATTTGAGTTAACTCATAAATTCCTATAGTTTTATGATTCCAGGTAGAATAAAACGAGTTAACTTTCTGTCAAACTCTTTTTTGGATAAAGTCTTGTAAATTTTGCAAACTCATGTAAATTTGTATAAGCTCTCGAGTCAAGAAGTGAGTCAATAGATTTCAAATCTATTGTAATTTTTGCTTACCATGACTCAAAGAAAATAAGTCCTTCTAAAAAACTTCAACAACTTATGCTTTTCTGAATTTATATATAACTTGGTGTTTTATGTAGTTTGATCTTATTTATTACTGATAAACTATTACACTTTATTATTGTGATTTTATATTTTGTTTTATCATGAAATTGAAATGTTGAATTATTAGTCATGTTAATAATAGTATTTTTTGTTAAGCCTATTAAAAAGCTTTTTAATATTATTTCTTCTATTATGTGAACTCTTCCGAGTTTGAGTCAACTCCACGGATCTAGTTTATGGAAGCTTACAAGTTTATGTAAACTCTTGACAAAATTACAAAAAAGAACCCACGCGCCTTTACAAGATTCATAGGTTATTTTGTATTTTTACAACCACCCCACTTGTTAAAACGTGGGACAGAACTCTTCCAAACAATATTTCTGAGCTTTCTAAAAGCCAAATCATATCTTCAATACAGAAGTAGCAATTTTTTACTTGTGCTTTTAACTGACTTTTTTTACTTTTTTTGTGACATAGTATTGGTTTCTTTCTGGAAACCTTACTGTTTTCTTGAAGTTTGTATTCAATTTCATCTGCATTTTGGCAGAGAGAATGTGAAGAGTTACAAAAGAAAATGGAAATTCTTAAGGATGAAAACTCCATGCTCACACAAAGGCTCAAGAGTCTTTCTGAGGAATGTCTGGAAATCTGCAATGAAAATGATGCCATAGAGGTCCATCACTTAAACTTCATCGCCCATTTTTTGAATTATTTACCGTTCATTCAAATGTAGTATTTAGGTCCTTTAAAAGACTGTGGTCCTTGTTTAGTTAGAAGATCCAAAGTCAATGAGATTGGCCTAACACTACATTCCCAACTCATTTTAAGGCAATGAAAATGAGTAATTTTCACTTTTTTGGTTCTTGCAAATCTCGTTTCGTTATTATGAATGCGGGACTTTATGACGTGAAATTCCTGTATTCTTTTCCCTCCGGTTGACTTACCATTAGTATACTCCCAGTCCAGCGGGAGCTTTTTGAGTATTCCCAAGATTACGAACCAAGAATTAAGTCTTGGCTAATGATTTTTCAATATGGTTAAGCACCAACCAACCAATGTCTCCAAATCTCTATCTAGCTAAACCATTATCTTTAATATCACTTATGAACCCAAAAGCCAAAAAGATGTCCATCATGGGGCTTAAGAGAGAAACCATGATATATCTTGTCTAAAAGCCTTGTACGATGATGAGTCTGTATTTTTATCTTACTCACAGGGTCTTCACCTAACCTCTGCAATTTTAAAAGACCAGTTATCTTGCATTATGGTCGTGCTCTTTCTCCTGACTCTGGCTGAATTTGCCCTCGTGATGATGCCCACATTCAGTTAGTTTCTTAGATAACAATTATTTAATCACCATCATTTGATCATTGTTTGCAAGGAAGTTAATTATGAGTCTTGAATTGATGACCATGTTGGTATATTATTATTATTATTATTATTATTATTATTATGTTGTGCATTTTTTTTCCAAGATTACTAATTTGATTGTGATATGGTGAAACAGGAAGAGCTGGTTAACATGTATGGAACAGAATCAATATCATATCTGTTGGACATGAAGCCACGCTGA