Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_14375	LG3	47579280	47581872	PREDICTED: uncharacterized protein LOC108334997	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
A/C	47579864	synonymous_variant	p.Ser195Ser
G/A	47579900	synonymous_variant	p.Gln207Gln
G/T	47579938	missense_variant	p.Arg220Leu
T/A	47579984	intron_variant
G/A	47580005	intron_variant
G/T	47580006	intron_variant
C/T	47580024	intron_variant
T/A	47580035	intron_variant
T/A	47580039	intron_variant
A/T	47580040	intron_variant
T/C	47580043	intron_variant
T/A	47580045	intron_variant
T/A	47580046	intron_variant
A/G	47580047	intron_variant
G/T	47580057	intron_variant
A/T,*	47580153	intron_variant
T/C	47580202	intron_variant
A/G	47580237	intron_variant
G/A	47580361	intron_variant
T/A	47580367	intron_variant
A/T	47580639	intron_variant
C/A	47580688	intron_variant
T/C	47580804	intron_variant
T/C	47580836	intron_variant
C/A	47580923	downstream_gene_variant
T/C	47580941	downstream_gene_variant
G/A	47580975	downstream_gene_variant
A/C,*	47581064	downstream_gene_variant
G/C	47581098	downstream_gene_variant
T/A,*	47581132	downstream_gene_variant
T/G	47581154	downstream_gene_variant
A/G	47581166	downstream_gene_variant
G/T	47581172	downstream_gene_variant
T/C	47581183	downstream_gene_variant
A/G	47581196	downstream_gene_variant
A/G	47581258	downstream_gene_variant
A/C	47581275	downstream_gene_variant
T/C	47581305	downstream_gene_variant
C/T	47581327	downstream_gene_variant
A/T	47581351	downstream_gene_variant
G/A	47581539	missense_variant	p.Glu235Lys
A/G	47581611	missense_variant	p.Ile259Val
G/A	47581688	synonymous_variant	p.Pro284Pro
A/G	47581734	missense_variant	p.Thr300Ala

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_14375.1

MSEPNLPPPDPTFYPSSMAREYRKGNWTLQETLILITAKKLDDERRLKAPSSSSSPSSSNRNSGELRWKWVENYCWSHGCLRSQNQCNDKWDNLLRDYKKVRDYEATKSSSSSSHISNNNQFQFQSYWTMEKHQRKEHKLPSNMLLQVYQAVTQVLQKKSHTSQLHHHHQHHFVNVVHSPPQEHPQVTPLLTSTSQPLSQTTPAASQPLLLLPPPSLPPRPVDSTTPPVSEGSESSGTECKNDDENSESKRRKFEQKLGSSIMRSASELAQALRSCEEKKEKRHREMMELHRRGLHIEETRNQVNQQGITNLVSAVTNLTGVIQSFITMNKDHGAGNADDHACSS*

CDS Sequence:
>Vu_14375.1

Promoter Sequence:
>Vu_14375::LG3:47577280-47579280(+)

TTGGAGGTGATTGGGGGAGACAAGATGTTGAATATTTCCATCATTCAACTGTGGTGCACGTAAGATAGTTAAATTTGTCTTCCATATTCCTTTTATTTAGATTCCTATAGTTTCTAACAACTTAACTTTGTTGTTTTAGGTACATGGACACAATCGTTGTAGACCAAGGTTGGTCTTTTATGTACGGATTTGTTGAATCTCAGACCATTCAACCTTCTGATAACACACTTGAAAACAGACAACATTATTTGCAAACATGGATGGATGAGTCAAAAAGAGACGTATACCTTGTGCCATACATTGATAGGTAGGTGTTGTTATATGTAAAAGTTCATTATTAAAGTTTCCTTAATTAGTTAAATAACTATTTGTCCTTCGTGATAGGTCGCACTGGCAGCTGATGGTCATCATTCCCAAACAATGTAAAATTATATGGTTTTGTTCGTTGCACATGAAGATGAAAAATGACTTGAGAACCATGCTTCAAGGGTAAGTGTTTATCCAAAAATGACTTTGAATTTGATGTTCACCTTAAACTTTTATGATAAATATAGTTATGATAATTTTACTTTATGTTTTCAATCTGTACAGAGTTATTGGTAAATCTCGAGGTCAATTAGTTCAATTTTTGTATCCAAAGGTTGTAAGTCATTTATAGTTCTAATTCATTTTCAATGTTATTGAATGATCTAAATTCTTGACTATTTAGTTTGTCATTTTAGTGTAACCAGCAGCAAGATTCATGGGAATGTGGCTTTCATGTCATGTATTGGATTAAGACCATCATTCGAGCTGTCATTACATATGACTGGAATGAGATAATGATGCATACCTTGAATACATTACAAATCAAATTCATCTTTAAACATATATGAAATCCTAATGAATCTTTCTTCAATTTTGCAGCGCTTCAAGAGTACATCTCCTATACAAGAGGACACAATTAGGCAGATAAGGCAGGAGTGGACAACTTATCTTCTGCAAAGATGGAGCAAGGAACACTTTTATTTGTTAATGAACATTGCTTAGGTTTAGTTTAAGTTTATATCTTCATATTGGATTATTTTTTACATTAAGTAGAACTTTCTTTATATGAAACGCATATATATATATATATTATACTATATTGTTTTGAGACAATTTTCTGTTTTTTAGGTGTGATTTTATTGCAAAAATAAATTAATTTTAAAAAAAAAAAACACCCAATAGACGTCGGTTAGTGCACAACAGACGTCTAACCCCCTTAATCCCTTAACAACCCGTTTCAGGCATATGGACGTCGGGGATATGCCTCGGACGTCTATATAGACGTCGGGCCTGACCACAACGGACGTCTATATAGACGTCCGAGTCATACCCCGACGTCTGACTAACGTCACCCACAAAGACGTCGAATACAAATCAGACGTCAAAAAACGAAAAAAACATACATCTAAAACCCTTTATGCACTATTATCATCAAATGATACCTCTATACAGCATAAATGTGTCCTTATGTGATCTTCTCAATAATATGGATAAATGATGTCTCTTTGCAATATATATTTTTAAGTGACACAGCTATTCCAATTATCTAATTAAAATCAAATCTACATCTTCTAAGATCCAGGGAAAAAACTAAGTTTAGCATAATAAATCAATTGTTTTACTTACTTGAATTGAAAAAGAATGGAGTGAGTAAAATATATAAAGAAAAAAATAATGATAAAGTGACATATATTTATATATATTTAATATATATTATAAAAATAAAATAGTCATAATTTTTTTTATTTTAATTTTTTTAAAATAAAAGTAAAAAGTAAGAGAAATTAAGATCAAATGTAAAAGTTCGTATGTGAAACCATTGTTACTCTAAAGAAAATTATAACTATTTTTTGTTCTCCATTGTGTATTCTCTTCCCACAATCTGAGCACAGAAAAAAAAAAAACTCAAACATTCACCTACCCCATCTCTTTGAAAATCTCATGCCACATGAAACCATAACCGCAACCAACCA

Gene Sequence:

>Vu_14375(+)

ATGTCTGAACCAAACTTACCTCCACCTGACCCAACCTTCTACCCTTCTTCCATGGCTCGTGAGTACCGCAAGGGTAACTGGACCCTCCAAGAAACTCTCATCCTCATCACAGCCAAGAAGCTCGACGACGAACGCAGGCTCAAAGCACCTTCTTCTTCCTCTTCTCCCTCTTCTTCCAACAGAAACAGCGGCGAACTAAGGTGGAAGTGGGTGGAGAACTACTGCTGGAGCCACGGCTGCTTGAGGAGCCAGAACCAGTGCAACGACAAATGGGACAACCTCTTACGCGACTACAAGAAGGTTCGAGACTACGAGGCCACCAAATCCTCCTCCTCCTCATCGCATATTTCAAACAACAACCAGTTTCAGTTCCAATCTTACTGGACCATGGAAAAACACCAACGTAAGGAACACAAACTACCCTCCAACATGCTCCTCCAAGTCTACCAAGCTGTCACGCAAGTGTTGCAGAAGAAATCCCACACTTCACAACTTCATCATCACCACCAACACCATTTCGTTAACGTTGTCCATTCACCACCACAGGAACATCCACAAGTTACGCCATTGCTAACTTCAACCTCACAGCCACTCTCCCAGACAACTCCGGCGGCTTCTCAGCCACTGCTGTTATTGCCACCACCGTCTCTTCCACCACGCCCGGTTGACTCCACTACTCCACCAGTTTCAGGTACTCTATGTATTTCATAATCAACATCAAGTTAGGACAATAACAACACTATTCCTTCTTTTTTTTTTTAAATTTTAATTTAAAAAGTGGTTCATAAATAATAATACATTTTCATTCTTAATCTTCTTAAAAATTATATATAAATGAATAATGATTCTCTTTTATTTATTCTTGTACTAATTAAATTTTCATCTTTATTTTTGTTATTCACTGGTAAAAGAATATATTAAATTTACTTTTTTTTTTATGTTATTTTATTGTGTTCCATTTTATATAATTTTTATTTTCACAAATGTAAATAGAGAGAAAAAAATTAGGTTGTTTGTATGTTTGCTTTTTTCGATATAATTTTTGGATGTGTTGTGTTTTGTTTGGATCTTGGTCAAACTTGTACTGTCTGTAAACCCTGCCACAATTAATGGGACCCGTTATTCTTTTTGGTAAAGTACAGTCAGTATTTCTTTAGGGTACATGTGTGATGGGGCCAAATGCCCTTTGGTAAAACTAAAACCTAACAACACTGTACAAACACTTCCAAAACTAAACTCTGCATCATTCTTTGAATCTCACCCTTTCTTTCTCCTTTTCATGGAACTTCATAATTATATTAAAACTTTCATAAGAAAATAAATATGTCTAATGTCATATAAAAACTCTTGTTTTATTTAAGTTTCAAGACTTTATTAATCTATTTTCAAAAGTACCATCATGCATACCCGTGGATGATGCATATGTCATCATTGTCTTGGATTTTGTGGGTTGTCCTAGGAGATCATGAATATTTACCGGTGTAATAATCACCTAGTGGTATAATGATTATATTAGTATAATATTTACTAAATATTTACAGTATACTATTTATTAATTATTATTAATATATGTACCTTGAATTTAATTAATAATATTATATATTATAAGAGTAACATAAGGTTCAATAATATATGGAATCTTCCCAAAAGAAAACTATATATATAACACACACGCATTTAGTAAGAATGTCATAGGTTAAAATAGATCTATATATACACACCAATCAAATTGAGAAGGAATATGTTTCACTTCAATGATTTCAGTCTGAAATAAATGACAAACTAGATTGTTACCATTCATCTTCTTTTATGTGAAAAGCTAGCCTAGCATATTTCTTGATATTTGTAAGAATTTTTTTTTCTTGATATAATATTTTATTTGTATTATTTTTGTAATCATATATAAAACTCAATGTATAAATTGATTTATAATAAATAACATGGTCTAAGTTTGGATGAGGTCTAACATGTACTAGTCAGATGATACAAAGCACTATAGTAATTAAATATATCGAGAAATTCATTTATTTTTTCAACATTAAAATTACTTTCTTAGAAGGAAATTTTTTTTATATATATATATTCCACTTGTATATGTATTACTTAAGAAAAGTTTTAAATGCATATGTATTACTTAATGTGAAAATGTTTTTTTTCAATAGTTATATACATGCATGTGTTATTTTCCGTCTTCCTCCATTGAAAATACGGTGATTATAATACCTGTGATGTGATGGGTGTTGTAGAGGGATCAGAATCGAGTGGCACAGAATGCAAAAACGATGACGAAAACTCAGAATCGAAACGCAGGAAATTTGAGCAGAAGCTTGGATCAAGCATCATGCGCAGTGCATCAGAGTTGGCACAAGCTCTTAGGAGCTGTGAGGAGAAGAAGGAGAAGAGGCACCGAGAGATGATGGAGCTTCATCGGCGAGGGCTTCACATTGAAGAAACACGTAACCAAGTGAACCAGCAAGGAATCACCAACCTTGTTTCTGCAGTAACCAACCTCACTGGTGTCATTCAATCATTCATCACCATGAACAAAGATCATGGTGCTGGAAATGCTGATGATCATGCATGTTCTTCCTAA