People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14326 LG3 46773520 46776266 PREDICTED: cyclic dof factor 1-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 46773549 synonymous_variant p.Lys10Lys
A/C 46773618 synonymous_variant p.Ser33Ser

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14326.1
MSEVKGSAIKLFGRTISLPHNDSSAPPTLACPSSSSSPPELTSATQQHQEDQEPQRKELTSLEDDDASSHETTEDLKSAASDALENPKTPSAETETSLQKSPENEEQSETSASEEKTPKKPDNILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNTSAAAVSHYRQIMMPEAFQGATLNASNGLHNAFFGNGSAVLTFGSDTPLCDTMSSVLNIAERAQSCVSNGFHATEPSGYFSYSKEGDGGGHSTGVSVSTTSNSSHASSHESVDKRVEGFTPQLSYFPGAPWPYPMPPTFFQPRYPLSFHTTPAYWSCMPPSWNISCMSSQSSDSNTVSAPILGKHSRNGNIITPSNSQKEIHNSSEHNFLIPKTLRIDDPGEAAKSSMWSKLGTKNDRTSSGGLFQAFPPKGNDMNHRVEASPQLQANPAALSRSLTFHEQT*


CDS Sequence:
>Vu_14326.1
ATGTCAGAGGTTAAAGGCTCTGCCATAAAACTCTTTGGAAGGACAATTTCTCTGCCACACAATGATTCTTCTGCACCTCCGACTCTCGCTTGTCCTTCATCTTCCTCTTCTCCCCCGGAACTTACCTCTGCAACACAACAACACCAAGAAGACCAGGAACCACAGAGGAAAGAACTTACCTCACTTGAAGACGATGACGCCTCATCACATGAAACCACAGAGGATTTAAAATCTGCCGCTTCAGACGCACTCGAGAATCCTAAGACTCCCTCAGCGGAAACAGAGACATCACTGCAGAAATCTCCCGAAAACGAAGAACAGAGTGAGACAAGTGCTTCTGAAGAAAAAACACCAAAGAAACCTGACAACATACTTCCATGTCCGCGGTGCAATAGCATGGACACCAAATTCTGCTACTACAACAACTACAATGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCAGGAGGAACGATGAGGAATGTGCCCGTGGGTGCTGGTCGCAGAAAAAACAAGAACACTTCGGCTGCAGCTGTATCACATTACCGACAGATAATGATGCCGGAGGCATTTCAGGGAGCTACACTGAATGCCTCCAATGGATTGCATAATGCCTTTTTTGGGAATGGGTCAGCTGTGTTGACTTTTGGTTCTGATACCCCTCTCTGTGACACCATGAGTTCTGTGTTGAACATTGCTGAGCGAGCCCAAAGTTGTGTATCAAATGGGTTTCATGCAACTGAGCCAAGTGGTTATTTTTCCTATAGTAAGGAGGGTGATGGGGGTGGTCATTCTACTGGAGTTTCTGTTTCAACAACTTCAAATTCCAGCCATGCTAGCTCACATGAATCGGTTGATAAAAGAGTTGAAGGTTTCACTCCTCAGTTATCATACTTCCCAGGTGCCCCTTGGCCTTATCCTATGCCTCCTACATTTTTCCAACCTAGGTACCCTTTATCATTCCACACTACACCAGCCTATTGGAGCTGTATGCCACCCTCTTGGAATATCTCATGTATGTCATCCCAATCTTCTGATAGCAACACTGTCTCTGCCCCCATTTTGGGGAAACACTCAAGGAATGGGAACATCATCACCCCATCGAACTCACAGAAAGAAATACATAACAGTTCAGAGCACAATTTCTTGATTCCCAAGACTCTTAGAATCGATGACCCTGGTGAAGCTGCAAAGAGTTCCATGTGGTCAAAACTAGGAACCAAGAATGACAGGACCAGCTCTGGAGGCCTTTTCCAAGCTTTTCCACCCAAGGGAAATGACATGAATCACAGGGTTGAAGCATCACCACAGTTGCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTTACCTTCCATGAACAGACCTGA


Promoter Sequence:
>Vu_14326::LG3:46771520-46773520(+)
ACTATTATTGTTGTAGCAAACTAAAGAAAACATTAGACTAGTATAGGACAAGATGAAGGTCTGCTCGAGTCAACCGAAATCTTAAGCAAATCAAATAATGAGACCTCTGGAGTTGCATTAGGTGATCATATTTAAGTATACTTTGAATGTTTTCTTTACTGATTTTAATTGTAATATTTAGTAAGAATTAATATGATGTTATGTGGCAACAAAATTTATACGAAGTTTATAAATATTGTAAATTAAATTCCTATATTACTTTTAAGTAATATTAGTTTATGTTTTTTTTTATGTATTATGATTATGAGAAAAATGTTGGTAATAAATCTTATAAAAAATAATATATTGTCCTAACATGTTAAGTGGGACTTATCTTTCTTTCCTAAAAGAATCAATACGCTAATAAACTGACTAATGGAGATTGGCGAGAGACTTGAATTTAAATTATTTAGTTTCTTTTATACTTTTTTAATCTTGTTTTGTTTTTTATCAACTCCCTATGTTTCGAGTTGTATAGTTCTTTTATAGGGAGTTTACTTCGTATTTTTTAAACATGAATTTTGTTCAGTGCTTCATGTTTTTATTCTCAGTTTTTTAATAATATTTTCTATGATAATATACATAATAAATAAACTTTATAGTATTAATTCAACTAAAAAGCCAAAATATATCATGATATTTAATGTGGATTTATAAAAAAACCAATAGATATTTTTATTGTAATATTAAATATATTGGTGATAAATATATTTGTTTATAAGGCTCGTTTGCTTAAAATTATACAATTACTTGCATATGCTTCATTTTTAAAATCATAGTAATTATTAGTAATTATATAAGTAGAGTCACAAGTTCCAAGGAACGTTAGGACAAGCCACATTAATAAAAATTGTAAGTTTTTCTGCTAATTATTTATTTTAGATGTTTATGGTATTTAATGGGAGCGAGAAAAAAAATTAATGCTTCATAAAAATTATTAAATGTATTATGAAAAATCAACTTATTATTATAGTAAATTATGTATTATGTTGAGATAGTATAGTACGTTGGAAGAGTTTTTACCTAAAAAATATGGGCAGTGTTAAGGAAAAGACAAAGTATGAAATTTATTTAGCATTAAAAACATTTACAGAAAAGACAAAGTCTGACATTCATTTAACGTTAAAAACATAGAAAGGAAAGACAAAGTAATACATTTATTTAACATTAAGAAGATTTAAATAAAGAGTAATGAAGCATTAATAGCATTTATTTTGAAACACTTAATTAAAAGTTTTTCTTGATGTGTTTCTGTTACATCCTATCCTATGATGATGTAGAATATTTGTTTGGTTTTAGGAGAGGTTATTTGGGTGTGATTTATGATTTGAGTTTTGTGAAATGAGGGAGAATTAAGAGAGAGAAGAGGTGGGGTCAAAATGAGAGGTGGGAGGCAATTTGACTAGGAAGGAAGAAAGTGTTACTAGAGTGGTTGACGAAAAAGGCAAAAAATGAAAATGCTGACAGGGATGAAAAAGGGTGGGACAGAACAGCACTATCTTTAGAAGCAATGTGGGAGAATCCAACAGCACACACAAAGATCTCATAGGCCACAAGAACTTGTGACTCACAAAATTCTTACCTTTTCCTGAGGTGGCAACATGTTTTTTCTCCTCTTCCTAAAATAAAAACCACACCCAACACAACACCACACCACACAACACAACAAAAACAAACAAACTTACTTCACCACTTCACCCATCCCCTCCCTCTGTCACCATTCATTATCCGTTTTCATATCAATTAACAGTGCAAAAGACACCAAAAAAGAGAGTTACTGTGTGCACCAACGACAACAACTTCTATATATCTATCTACATATACTTATGTATATATATTTTTCATCGTTACTTTCCCCATTTTTCTAGAAAGAGAAGGAGCAAGCAAGCAAACCAAAGCAACAACAAGAGAGAGAGATATTCCTGATCCTGACCCTCATCACCATTTTTATATCTCAGGAA


Gene Sequence:
>Vu_14326(+)
ATGTCAGAGGTTAAAGGCTCTGCCATAAAACTCTTTGGAAGGACAATTTCTCTGCCACACAATGATTCTTCTGCACCTCCGACTCTCGCTTGTCCTTCATCTTCCTCTTCTCCCCCGGAACTTACCTCTGCAACACAACAACACCAAGAAGACCAGGTACGTCCACCACCATATTTGTTTTTGGTTGAGTTTGTGGAAAACCATGTCGATTTGCAAATCTAACCGCGACCCATTTTGCAGAACCATTCAATTGCTAATGGGTGTTTTCAAATCTTGAAAAAGTTTTCTTCTTGGCATCGTGTCAATTCAGTTTAATTCAGGGCCTGCTGCAATTTTTTGTGGTTATTTTTATTTGTTTTTTTAATGACGCGTTTCCAATTTATTTAATCATCATTTAAGTGGTGGCGAGAATTCGCTGTGGGGTTCCTTTCGGCCAAATTGGATCCAATCTCCTTTATGGAATACAAGTATAAGAATATTGGATGGAATATATCATGTGGTTTGGCTAGCTTTGGTTTTAGCGTTCTCTTTTGAGTCCATGAATTTGCTTTTATGCTACAAAGTGAGTTTTCTAATTTTAGTGATTTCTTCCTGTTTGGAAAATATTGTCCTAAACGGGTTATTTGGCGACTTCAATCGAAATTCAAAAAAAGAAAAAAAATATTGTGTCTATTTTTAATTAGATCTCTTGCAGGATCCCAGAGGTACTATGGCTAAGTTTTTGGCTTGAATATCTTCTTGTTTTACTTAACTCTAATCTGATCACGTTTCTTTTCACACCAAGGACTTTAATTGGAGCTTAACTCTTCTAATTTGACACTTTTGTCCATATTCGAGTCCTTATTTAACAATTGTCCAAATGACCCCTGATTTTGTGACATCACTGAGGACATATTTATATTTATAGACTGCTTTTGATTTAATTATCTTCCAGCTGTTTCATACTCTTAGTTTCTTCTTCCCCTTGAATTCCTTCTATAGTCCTGTATTTGTAAATTTCAAAAGATCATTTTCTCGATTGTCACCTACATATTTACATCTATAATTGTGGTTTTCTTTTGCAAATCTAGAATTGAGATTTTGGCGCTGAAATTGTTCAATTGACTCTGCTCCAGACGCTTTCACGTGAGCGACTTCGTTCATTGAACAAAGTACTTATACTGTTAACTACCTTAACGTGGAAGGAAAAATAATATCTGCCCCATTTTTGGTGGTGTGAATTCACTCACCCTCCTACTTTTCCCCTGAAATATCTAAGAATTTTTTATATGTTGAATTAGAGTCACCAAATAAATAAAAAAAATGTATCAATTTCACATGTCTAATTCTTCTATTTTGGGCTATGTAAATAACATGCTTCAAGCAAAATTTGTGAATCTTAACGTGTGATAATGGTAAATACCAGCATATCATTTCTTTTTTGTTGATTTAACGTACTGAGTTCACAGTTTTACAATTCCACGAGCTTAGCCATAGTAAATTAGCAATTCTAACCTTGGTCAGGTTCACTGTTTTAGGAACCACAGAGGAAAGAACTTACCTCACTTGAAGACGATGACGCCTCATCACATGAAACCACAGAGGATTTAAAATCTGCCGCTTCAGACGCACTCGAGAATCCTAAGACTCCCTCAGCGGAAACAGAGACATCACTGCAGAAATCTCCCGAAAACGAAGAACAGAGTGAGACAAGTGCTTCTGAAGAAAAAACACCAAAGAAACCTGACAACATACTTCCATGTCCGCGGTGCAATAGCATGGACACCAAATTCTGCTACTACAACAACTACAATGTCAACCAGCCTCGTCATTTCTGCAAGAACTGTCAGAGATACTGGACTGCAGGAGGAACGATGAGGAATGTGCCCGTGGGTGCTGGTCGCAGAAAAAACAAGAACACTTCGGCTGCAGCTGTATCACATTACCGACAGATAATGATGCCGGAGGCATTTCAGGGAGCTACACTGAATGCCTCCAATGGATTGCATAATGCCTTTTTTGGGAATGGGTCAGCTGTGTTGACTTTTGGTTCTGATACCCCTCTCTGTGACACCATGAGTTCTGTGTTGAACATTGCTGAGCGAGCCCAAAGTTGTGTATCAAATGGGTTTCATGCAACTGAGCCAAGTGGTTATTTTTCCTATAGTAAGGAGGGTGATGGGGGTGGTCATTCTACTGGAGTTTCTGTTTCAACAACTTCAAATTCCAGCCATGCTAGCTCACATGAATCGGTTGATAAAAGAGTTGAAGGTTTCACTCCTCAGTTATCATACTTCCCAGGTGCCCCTTGGCCTTATCCTATGCCTCCTACATTTTTCCAACCTAGGTACCCTTTATCATTCCACACTACACCAGCCTATTGGAGCTGTATGCCACCCTCTTGGAATATCTCATGTATGTCATCCCAATCTTCTGATAGCAACACTGTCTCTGCCCCCATTTTGGGGAAACACTCAAGGAATGGGAACATCATCACCCCATCGAACTCACAGAAAGAAATACATAACAGTTCAGAGCACAATTTCTTGATTCCCAAGACTCTTAGAATCGATGACCCTGGTGAAGCTGCAAAGAGTTCCATGTGGTCAAAACTAGGAACCAAGAATGACAGGACCAGCTCTGGAGGCCTTTTCCAAGCTTTTCCACCCAAGGGAAATGACATGAATCACAGGGTTGAAGCATCACCACAGTTGCAAGCCAACCCTGCAGCTCTATCGCGCTCTCTTACCTTCCATGAACAGACCTGA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1321962