Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_14312	LG3	46640132	46643461	PREDICTED: putative disease resistance protein RGA1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/A	46640156	synonymous_variant	p.Leu1102Leu
G/C	46640172	stop_gained	p.Ser1097*
C/A	46640182	missense_variant	p.Val1094Phe
C/T	46640186	synonymous_variant	p.Val1092Val
A/C	46640218	missense_variant	p.Ser1082Ala
T/A	46640219	synonymous_variant	p.Ile1081Ile
C/T	46640225	synonymous_variant	p.Gly1079Gly
C/T	46640227	missense_variant	p.Gly1079Arg
G/T	46640232	missense_variant	p.Ala1077Glu
C/T	46640233	missense_variant	p.Ala1077Thr
C/T	46640286	missense_variant	p.Gly1059Glu
G/T	46640289	missense_variant	p.Ala1058Glu
G/C	46640295	stop_gained	p.Ser1056*
T/G	46640302	missense_variant	p.Met1054Leu
A/C	46640309	missense_variant	p.Ser1051Arg
C/G	46640310	missense_variant	p.Ser1051Thr
G/A	46640317	missense_variant	p.His1049Tyr
A/G	46640333	synonymous_variant	p.His1043His
T/C	46640334	missense_variant	p.His1043Arg
G/C	46640353	missense_variant	p.Leu1037Val
A/C,*	46640372	missense_variant	p.Phe1030Leu
A/C,*	46640373	missense_variant	p.Phe1030Cys
G/C	46640381	missense_variant	p.Ser1027Arg
C/A	46640382	missense_variant	p.Ser1027Ile
T/C,G	46640388	missense_variant	p.Gln1025Arg
G/T,A	46640389	stop_gained	p.Gln1025*
T/A,C	46640398	missense_variant	p.Thr1022Ser
C/G	46640413	missense_variant	p.Val1017Leu
G/C	46640417	missense_variant	p.Asp1015Glu
G/A	46640422	missense_variant	p.Pro1014Ser
G/A	46640430	missense_variant	p.Thr1011Ile
A/T,*	46640441	missense_variant	p.Asp1007Glu
A/C,*	46640445	missense_variant	p.Phe1006Cys
A/*,C	46640452	missense_variant	p.Tyr1004Asp
G/A	46640476	missense_variant	p.Arg996Cys
C/A	46640488	missense_variant	p.Asp992Tyr
C/G	46640496	missense_variant	p.Arg989Thr
C/G	46640499	missense_variant	p.Cys988Ser
C/A	46640518	missense_variant	p.Val982Phe
C/A	46640525	synonymous_variant	p.Leu979Leu
G/A	46640528	synonymous_variant	p.Ala978Ala
T/A	46640537	missense_variant	p.Gln975His
C/T	46640577	missense_variant	p.Gly962Asp
A/G	46640579	synonymous_variant	p.Gly961Gly
C/T	46640581	missense_variant	p.Gly961Ser
A/T	46640586	missense_variant	p.Met959Lys
T/G	46640587	missense_variant	p.Met959Leu
C/A	46640591	missense_variant	p.Arg957Ser
T/A	46640697	missense_variant	p.Glu922Val
T/C	46640711	synonymous_variant	p.Val917Val
C/G	46640727	missense_variant	p.Gly912Ala
G/A	46640743	stop_gained	p.Gln907*
G/C	46640759	missense_variant	p.Ser901Arg
A/T	46640769	missense_variant	p.Val898Asp
T/A	46640800	missense_variant	p.Ile888Phe
A/G	46640802	missense_variant	p.Ile887Thr
G/A	46640811	missense_variant	p.Thr884Ile
C/T	46640834	synonymous_variant	p.Val876Val
T/C	46640878	missense_variant	p.Ser862Gly
T/C	46640884	missense_variant	p.Lys860Glu
T/C	46640885	synonymous_variant	p.Glu859Glu
T/A	46640927	missense_variant	p.Glu845Asp
A/C	46640955	missense_variant	p.Leu836Arg
A/T	46640992	missense_variant	p.Leu824Met
G/C	46640997	missense_variant	p.Pro822Arg
A/C	46641005	stop_gained	p.Tyr819*
A/T	46641007	missense_variant	p.Tyr819Asn
A/C	46641008	synonymous_variant	p.Val818Val
A/C	46641012	missense_variant	p.Ile817Ser
T/C	46641013	missense_variant	p.Ile817Val
G/A	46641016	synonymous_variant	p.Leu816Leu
C/T	46641019	missense_variant	p.Glu815Lys
G/A	46641050	synonymous_variant	p.Gly804Gly
C/G	46641051	missense_variant	p.Gly804Ala
G/T	46641053	missense_variant	p.Asp803Glu
T/C	46641057	missense_variant	p.Tyr802Cys
T/C	46641059	synonymous_variant	p.Thr801Thr
T/A	46641061	missense_variant	p.Thr801Ser
G/C	46641074	missense_variant	p.Cys796Trp
T/C	46641089	missense_variant	p.Ile791Met
A/C	46641095	missense_variant	p.Ser789Arg
G/A	46641106	synonymous_variant	p.Leu786Leu
T/A	46641109	missense_variant	p.Arg785Trp
G/A	46641121	missense_variant	p.Pro781Ser
G/T,A	46641137	synonymous_variant	p.Pro775Pro
G/C	46641155	missense_variant	p.Asp769Glu
C/T	46641157	missense_variant	p.Asp769Asn
C/G	46641163	missense_variant	p.Asp767His
C/T	46641178	missense_variant	p.Glu762Lys
C/T	46641235	missense_variant	p.Glu743Lys
C/T	46641249	missense_variant	p.Gly738Glu
G/A	46641282	missense_variant	p.Ala727Val
A/G	46641525	missense_variant	p.Leu646Ser
C/G	46641550	missense_variant	p.Glu638Gln
A/G	46641563	synonymous_variant	p.Cys633Cys
G/A	46641752	synonymous_variant	p.Ser570Ser
G/T	46641765	missense_variant	p.Ser566Tyr
A/T	46641826	missense_variant	p.Tyr546Asn
G/T	46641828	missense_variant	p.Ser545Tyr
T/C	46641866	synonymous_variant	p.Lys532Lys
C/T	46641889	missense_variant	p.Gly525Arg
G/T	46641897	missense_variant	p.Ser522Tyr
A/T	46642237	missense_variant	p.Ser409Thr
A/T	46642266	stop_gained	p.Leu399*
A/T	46642280	synonymous_variant	p.Ser394Ser
G/T	46642357	missense_variant	p.Leu369Ile
A/T	46642404	missense_variant	p.Val353Glu
T/A	46642434	missense_variant	p.Glu343Val
G/A	46642466	synonymous_variant	p.Tyr332Tyr
T/A	46642677	missense_variant	p.Lys262Met
T/A	46642786	missense_variant	p.Asn226Tyr
T/C	46642936	missense_variant	p.Asn176Asp
G/C	46642970	missense_variant	p.His164Gln
A/G	46642985	synonymous_variant	p.Val159Val
G/A	46642991	synonymous_variant	p.Pro157Pro
A/T	46643008	missense_variant	p.Ser152Thr
G/A	46643018	synonymous_variant	p.Arg148Arg
C/G	46643025	missense_variant	p.Cys146Ser
A/T	46643175	missense_variant	p.Leu96Gln
T/C	46643274	missense_variant	p.Gln63Arg
T/A	46643294	missense_variant	p.Glu56Asp
C/T	46643298	missense_variant	p.Ser55Asn
G/A	46643345	synonymous_variant	p.Ile39Ile
A/G	46643346	missense_variant	p.Ile39Thr
G/A	46643351	synonymous_variant	p.Asn37Asn
T/C	46643355	missense_variant	p.Asn36Ser
C/T	46643366	synonymous_variant	p.Gln32Gln
A/G	46643370	missense_variant	p.Ile31Thr
T/C	46643372	synonymous_variant	p.Gln30Gln

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_14312.1

MAEALLGSVIENLGSFVQDQLGTYLGVEQQIQKLSNNLIAIRAVLRDAERKQITSEVLKNWLQKLTDAAYVLDDILDECSIHFTKMHSDDGHTSCLSRLHPNDILFRFNIEKRMKDITQRFHDIHEEKIRFNLEHGVTEVQRVDDCWRQTSSDITEPVVYGRDHDREQIVKFLLENASNSEELSIFLIVGMGGLGKTTLAKQVFNDHRVCKHFDLPIWVCVSDDFNTMTILQSMIECITGQNPNLNSLEAMRKKVEDVLHGKRYLLVLDDVWNEDPEKWEQLKGKLQCARAAKGATILVTTRLEEVASTMQTHPAYRLKELPGDESWSLFKYHAFGPNREEMEELVAIGKEIVRNCIGLPLAIKTLGSLLRDQSEVRQWIYVKESSSKTNEENSITRALKLSYSNLELSLRRCFSFCAIFPKDFEIDKEELIHLWMANGFIESERNIEVEDVGNKVWNKLYSRSFFQEAKCDEFGMVKSFKMHDLFHDLAQSIMGEECAAFVEGIPLSSRVHYSTLLSSNVSFGGFKHAFKKVESLRTFLDLRTSYVLDVAPVPSNHSLRALCTRSSLLSPLNVLTHLRYLSLNCFGKANLNNLICQMRKLQILKLKHSVELHGLPKNLTQLQDLRHIVMDYCDSVVETLPKISKLRHLRTLSVFVVGSKPGCGLAELHGLNLGGRLSIRGLENVPNEWDAKQANLIGKDLNILQLSWDGNANPKGSDVSVERVLEALEPPSTLKSFGMNGYEGRQLPSWMRSSLVLRDLVEVTLSDCDNCEELPPLGKLPHLKRLEVSGIKNVKCIDGETYDGVEEKAFPSLEELIVYNLPNLERLLRDEGVEVLPRLSQLRIEGVLNFKVPRLPCVEKLSVERIGEAASFMEVVGNMACLKTLSIIGDKGVVVLPVEFSRLGALQELYIGAWYDVEYFPEHILEGLTSLRSLSIRSCRKLKSLSEGVRHLARLERLMIGGCPELVALPSNMSQLTALREVSIKHCCRLPDGLQRVPSLRVLYIFDCTCTSLPDWVGDMTTLEQLSILFCEELRSLPSSIQHLTNLSHLSIRMSSSAGAVQEGNRRGLAIHKPHSAIGTISMMISPYLPIVSVCSSKLCGLLRSVYIE*

CDS Sequence:
>Vu_14312.1

ATGGCCGAAGCTTTGTTGGGCTCTGTGATTGAAAATTTGGGATCTTTTGTTCAAGATCAACTTGGAACTTACTTGGGTGTTGAACAACAAATTCAGAAGCTTTCCAACAACCTCATCGCAATTCGTGCTGTCCTCAGAGACGCTGAGAGAAAGCAAATAACAAGTGAAGTCCTCAAGAATTGGCTGCAGAAACTTACAGATGCAGCATATGTCTTAGATGATATATTGGATGAATGTTCGATTCACTTCACAAAGATGCACTCTGATGATGGACATACTTCATGCCTATCCCGTCTCCATCCTAATGACATTCTCTTTCGTTTCAATATTGAAAAGAGGATGAAAGACATCACACAAAGATTTCATGACATTCATGAAGAAAAGATCAGGTTTAATTTAGAACATGGTGTCACAGAGGTGCAAAGAGTGGATGATTGTTGGCGCCAAACTAGCTCTGACATTACAGAACCCGTAGTTTATGGCAGAGACCACGATCGAGAGCAAATTGTGAAGTTTCTTCTGGAAAACGCTAGTAACAGTGAAGAGCTCTCTATCTTTCTCATAGTTGGTATGGGTGGACTTGGAAAAACAACATTAGCCAAGCAGGTTTTCAATGATCACAGGGTATGCAAACATTTTGACTTGCCAATTTGGGTTTGTGTTTCTGATGATTTCAACACCATGACAATACTACAATCCATGATAGAATGCATCACCGGACAAAATCCCAATCTCAATAGCTTAGAAGCAATGCGGAAAAAGGTTGAAGACGTGTTGCATGGGAAGAGGTATTTACTTGTTCTTGATGATGTGTGGAATGAAGACCCAGAGAAATGGGAGCAGTTGAAGGGAAAGTTGCAGTGCGCAAGGGCAGCAAAAGGAGCTACCATTTTAGTCACTACTCGACTCGAGGAAGTTGCTTCCACCATGCAGACGCATCCTGCTTACCGTTTGAAAGAATTGCCAGGAGACGAAAGTTGGTCGTTGTTCAAATACCATGCGTTTGGACCAAACCGAGAAGAAATGGAAGAGCTCGTGGCAATTGGCAAAGAGATCGTGAGAAACTGCATTGGTTTGCCGCTTGCCATAAAAACACTGGGAAGCCTCTTGCGTGATCAAAGTGAGGTAAGACAGTGGATATATGTAAAGGAAAGTAGTTCTAAGACAAATGAGGAAAATTCTATTACGCGTGCTTTGAAACTTAGCTATTCTAATTTGGAGTTGTCATTGCGGAGATGCTTTTCTTTTTGTGCAATTTTCCCCAAAGATTTTGAAATAGACAAGGAAGAATTGATTCATCTCTGGATGGCTAATGGGTTTATTGAAAGTGAAAGAAACATAGAAGTGGAGGATGTTGGAAATAAAGTGTGGAATAAATTATACAGTAGATCATTTTTTCAGGAAGCAAAGTGTGATGAGTTTGGTATGGTCAAAAGTTTCAAGATGCATGATCTATTTCATGATCTTGCCCAGTCTATTATGGGTGAAGAATGTGCGGCTTTTGTGGAAGGAATTCCGTTGTCAAGTAGAGTTCACTATTCAACCTTGTTATCTTCTAATGTTTCTTTTGGAGGATTCAAGCATGCTTTCAAGAAAGTTGAATCCCTGCGAACTTTTCTTGATTTGCGGACTTCTTATGTTCTTGATGTTGCCCCGGTGCCATCAAACCATTCTCTCCGAGCATTATGCACAAGGTCTTCTTTGTTGTCCCCACTCAATGTTTTAACACATTTGAGATATTTGAGTTTGAATTGTTTCGGTAAAGCAAACTTAAATAACTTAATTTGTCAAATGCGGAAATTGCAAATTTTGAAATTGAAACATTCAGTAGAACTTCATGGACTGCCCAAAAACTTGACGCAATTACAAGATCTAAGACATATTGTGATGGATTATTGTGATTCAGTAGTAGAGACGCTTCCCAAAATTAGCAAGTTAAGGCATTTAAGAACACTAAGCGTTTTCGTGGTGGGTTCAAAGCCAGGGTGTGGCTTAGCAGAGTTGCATGGCTTAAATCTGGGAGGCAGGCTAAGTATCAGAGGCCTTGAGAACGTTCCGAATGAATGGGATGCTAAACAAGCAAATTTGATTGGTAAGGACTTGAATATCCTGCAGTTGTCATGGGATGGTAATGCTAATCCAAAAGGTAGTGATGTAAGTGTGGAGAGAGTATTGGAAGCCCTAGAACCTCCCTCAACTCTCAAGAGTTTTGGGATGAATGGATATGAAGGAAGACAGCTACCCAGTTGGATGAGAAGTTCTCTAGTTTTGAGAGACTTGGTGGAAGTTACACTCTCCGACTGTGACAACTGTGAGGAGCTTCCCCCACTTGGTAAACTACCACACTTGAAAAGGCTAGAGGTGAGTGGAATAAAAAATGTGAAGTGCATAGATGGTGAGACATATGACGGCGTGGAGGAGAAGGCATTTCCATCGTTGGAGGAACTGATTGTTTATAATTTACCAAATTTGGAGAGGTTGTTGAGGGATGAAGGAGTAGAGGTGCTCCCTCGTCTTTCCCAATTAAGAATTGAAGGTGTCTTGAACTTTAAAGTCCCACGTCTTCCTTGTGTTGAAAAACTTAGTGTTGAAAGGATTGGCGAAGCGGCTTCCTTCATGGAAGTTGTGGGGAATATGGCTTGTCTAAAGACCTTGAGCATTATTGGCGATAAAGGAGTGGTGGTATTACCCGTCGAATTCAGCAGGTTGGGTGCACTACAGGAACTATACATTGGAGCATGGTATGATGTAGAGTATTTTCCAGAACACATACTGGAAGGTCTAACTTCTCTTCGAAGTTTGTCCATTCGAAGCTGTAGGAAATTGAAATCGTTGTCTGAAGGTGTGCGACATTTGGCTCGTCTTGAGAGGTTGATGATCGGTGGTTGTCCAGAGCTGGTGGCTCTACCAAGCAATATGAGTCAACTAACTGCCCTGCGGGAGGTTTCAATCAAGCATTGCTGCAGATTACCAGATGGCTTACAACGTGTCCCCTCCCTACGAGTTTTATATATATTCGATTGCACGTGTACTTCATTGCCGGACTGGGTGGGAGACATGACTACTCTTGAACAATTAAGCATTTTGTTTTGTGAGGAGTTGAGGTCACTGCCGAGTAGCATTCAACATCTCACCAACTTGTCTCATTTAAGTATACGGATGTCCTCATCTGCAGGAGCGGTGCAAGAGGGAAACAGGAGAGGATTGGCAATACATAAACCACATTCCGCAATTGGGACTATATCCATGATGATATCACCTTATCTCCCTATTGTGTCAGTCTGTTCTTCAAAATTGTGTGGCCTGTTGCGCAGTGTATATATTGAATAA

Promoter Sequence:
>Vu_14312::LG3:46643461-46645461(-)

ATTTACGGCAGTATAAAAGTTGTATTCAAGTGAGGAGGGGGTCGACAATAGAAAATATGGTTGGAGGTTATAATAAATTATGTTTAAGGTTGAAATAGATTGTTACGTTCGAATTGAAACAAATAGAACAGGGGTGTGAGTTTATCTAGCAAATGTGTGGTAATACAAATATAAGAACTTCCTGTTCATCATTTACAACGATAGAAGCTTGTTTCTATTCTCCAAAACCTAAACTCTTTCATTTTCTTTAGTGATTTTCAAGGATACAATCTAGTTAGAAAATAGAGAACAATGGTAAGTTATTTTTTATATTTTTACTTCAAATTCTTTTGGAACTAGGAAATAGAGAATAATGGGTATAATTATTTAGTTTACTTGAGTTGGTAATATTTTACTGTTATACGGTTGGTTACCAATTGGCAATGGACATGTTACAACATGCCAGTGGATATGATTTTAAGTATGATTATAGTAATTTTATTTATGCATCCAAAGAACTCGCTTCTTTTTCAGTCCTCTAATATGGCAGCTCCTCAGTGTATTAAATAAGAATATTTTTTTTCTTTTTCACAAGCTAGATAATAGAGACAGATGCAAAGCTTTACATGATGTAAGAATCTAACACGAAAGGAGCTATTGATCACTAGCTAGAATAGTCATCACCTGTCATATATCTTTTCTTAACAATCTCTTACGCAAATATTAGTCATTCTTAGGCGTGTTCACGAGTAAGATAAGTTCGAAATTTATTGGCAAAACTTAAACTTGAACTAATCACATTAATTTGGGTTAGTTTAATTGAATTTTTTTTATTATATGCCTTATGTTATACTTAACATTCGCAATAAATAACTATAGCTATTTGTAAAAGTATGATAAAATAATATATATGTTATGAAGTCTTTTTAACTATTGATAACTTTCACTTTTTGAGAACAATTTATTTAAATACACACCTTATTTTTAACTGTTATGAAGCTACATTTTTTTTCTCAATGCCAGCTTAAAGATGCATCATTTTAAGGGTTATAATCTCTGGGGGTATCAATTCAATATACTTTGGGGATGACAACATATTCTTGAGCTGCAAGAAGAAGGGATTCCATCATCAAGCTGTTGACAACTTATTCTTTTTTTTTTTCACAATACGAATGACATTTTTTTTTATTTTTCAATCTACTGAGATAAACTTCAAAATAAAAGCACTTTGCTTGTATAATTACTATGCTCGTTATATTCCAAACACCCAGCATAAGTTAGTTAAAGTACATATAAAATTCTTTCACACCAAATTATTGTTCACTCGTTGCCTCTCCTCTCCATATCACCAACCTTTCACTCAATCTAGCGCTCGTTCCTCCCAATGGCCGAAGCTTTGCTGGGATTTGTGCTTCAAAATTTGGGATCTTTTGTTGAATACAACCTTGCAACTTGATGGGGTTGATCAACAGACTCAAACTTTCCAGCAACCTCACCGCAATCCGTGCTGTCCTCAGAGATGCCGAGAGAAAGCAAATGACAAATCATGCTGTGAAGGATTGGCTGCAGAAACTCACAGATGCAGCATATGTGTTGGATGAATGTTCAATTCACTTCACAAATATTTGATGGCTTTCATAAAGTATGAAATTTTAAATTTTCTCTGAAAGGAATAGATTATTTTAAAATCTCTTCTCAATAAATTTATGAAACAAAACTAAATTATGATTATAATCCAGTAAAAGAATGTAAATCTTTATCTTTTAACTGTACATGATAAAGAGGCCATTCAAGCATCACAAAAGTTTGTCGGTAAAGGCTGTAGCATCTCAACCATTCATTTAAAGCAGACAAACAAAAGTCAATTTATTTATTCCTTTTTCTGCCACCACTTTCCTCTCTCTGCTCAATTATTTTGCATAAAAGCAACGCCACTTAATTAAATTCCTTTCAAATCACCACACCAAATATTGCTCTCCATTTCACCAACCTTTCCTTCAATCCATCGCTCGTTCCTCCCA

Gene Sequence:

>Vu_14312(-)