Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14214 LG3 44907730 44909411 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   pollen sperm cell differentiation, pollen sperm cell differentiation, pollen sperm cell differentiation, pollen sperm cell differentiation
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/A 44907843 missense_variant p.Thr264Ser
T/A 44907844 synonymous_variant p.Pro263Pro
A/C 44907878 missense_variant p.Phe252Cys
A/G 44907886 synonymous_variant p.Cys249Cys
G/A 44907898 synonymous_variant p.Asn245Asn
T/C 44907900 missense_variant p.Asn245Asp
T/A 44907934 synonymous_variant p.Pro233Pro
C/G 44907939 missense_variant p.Val232Leu
T/C 44907952 synonymous_variant p.Glu227Glu
A/T 44907960 missense_variant p.Phe225Ile
A/T 44907969 missense_variant p.Phe222Ile
C/G 44907993 missense_variant p.Val214Leu
T/A 44908042 synonymous_variant p.Pro197Pro
G/T 44908043 missense_variant p.Pro197Gln
C/T 44908090 synonymous_variant p.Gln181Gln
G/C 44908092 missense_variant p.Gln181Glu
T/C 44908105 synonymous_variant p.Val176Val
G/T 44908146 missense_variant p.His163Asn
T/A 44908207 missense_variant&splice_region_variant p.Arg142Ser
T/C 44908224 upstream_gene_variant
A/G 44908234 upstream_gene_variant
G/A 44908256 upstream_gene_variant
G/T 44908278 upstream_gene_variant
C/G 44908415 upstream_gene_variant
G/A 44908472 upstream_gene_variant
A/T 44908485 upstream_gene_variant
T/A 44908496 upstream_gene_variant
C/T 44908501 upstream_gene_variant
C/T 44908513 upstream_gene_variant
A/C 44908521 upstream_gene_variant
G/A 44908525 upstream_gene_variant
C/A 44908582 stop_gained p.Glu131*
C/T 44908677 missense_variant p.Arg99Gln
C/T 44908695 missense_variant p.Arg93His
G/A 44908722 missense_variant p.Ser84Leu
T/G 44908751 missense_variant p.Arg74Ser
G/A 44908924 upstream_gene_variant
T/A 44909014 upstream_gene_variant
A/G 44909035 upstream_gene_variant
G/A 44909048 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14214.1
MERELERGYVKKGPWSREEDEVLLRHVRKYGPREWSSIRSKGFLPRTGKSCRLRWVNKLRPNLKTGCKFSAEEERLVIEMQTQFGNKWAKIATYLPGRTDNDVKNFWSSRRKRLERMLQKPTTLKLQKSKGKTPLTQVLADKAPPCSSNQVEENLCYTTSYMGHTEVFEMINLQDLVKPNYQQMENDYLSAVEVEATPLHTVPSFESSSGNNFPVLPEPLIDFPLFPECQDLVPETFDPNFIDGFNEKKCSEFVCSQKLGTGLPTLGLEENYQITTSNVLFKDFPSEIFEYFEQIPTSTKQ*


CDS Sequence:
>Vu_14214.1
ATGGAAAGAGAGTTGGAGAGAGGGTACGTGAAGAAGGGACCATGGAGTAGAGAAGAAGATGAAGTTCTTCTGAGACATGTCAGAAAGTATGGTCCAAGAGAGTGGAGCTCCATTCGATCCAAAGGCTTCTTGCCACGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCAAACTTGAAGACTGGATGCAAGTTTTCGGCAGAAGAAGAGAGATTGGTGATAGAAATGCAGACACAGTTCGGGAACAAATGGGCCAAAATTGCAACGTATTTGCCGGGGAGAACGGACAATGATGTGAAAAACTTTTGGAGCAGTCGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAGCCAACAACGTTAAAGTTGCAGAAAAGCAAGGGAAAAACTCCTCTTACTCAAGTGCTAGCGGATAAGGCACCTCCATGCAGTTCAAACCAGGTGGAGGAAAACCTTTGTTACACTACTTCCTACATGGGACACACCGAGGTGTTCGAGATGATCAACCTTCAAGATTTGGTAAAGCCAAACTATCAGCAGATGGAAAATGATTACTTGAGTGCAGTTGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGAACAACTTCCCTGTGCTCCCTGAGCCACTAATCGACTTTCCACTCTTCCCAGAATGCCAGGACCTTGTTCCAGAGACCTTTGATCCAAATTTTATTGATGGGTTCAACGAGAAGAAATGTTCAGAATTTGTATGCAGCCAGAAGCTTGGGACCGGGTTGCCAACTCTTGGATTGGAGGAAAATTATCAAATTACAACTTCAAACGTCTTATTCAAGGACTTCCCAAGTGAGATTTTTGAATACTTTGAGCAGATTCCAACCTCAACAAAACAATGA


Promoter Sequence:
>Vu_14214::LG3:44909411-44911411(-)
TATTAAATTTTATGAGTGATAAGCCTATTAAATATTAGGAGAGAATGAAAAACAAAAATTGAAAGAATACATATCATCACTATTTTAAATGAAAAAGAGGTGATATATAAAGAAAAAAGTAAAATATATACAGAATGAAATTAAAGTTAAAATTAAGTATATTTGTCATTATTTATAATTATTTATTTTATTTATTATGCACATTAAATATTGATCCGTTTAAGTTTTTATGTGTTACTTTATGCGTTTTAAATATATTTATGTACACTAATTTTGATATTTTATATTTTATATTTTGAAGACAAAATAAATAAATAATATAAAAAATTCAATAGAAAATTTAATTATTGTTAAGATAAAAGTACATTTGATCTAAAATAAATTCTTTATTAAATAAATTTGGTCTATTTAAAATTGGGGGTGAAATATGGACTTTTTTATCTTTTATTTTTTTTTCCAAAAAGTGTAGTGTAAGTTTGATATCTTATTATCTTGGAAAGTTTGACTTATAGTCTATTAGTTTCTTTAAGAGTCTATTTTATATAAAAGTTTTTCCACACGAATGTGATAATGTCGTACAACAAAACCTTCTTCTATCATATATATTGGATAACTTTAATTCTTTTCTCATTTTAATCATTTATTCCATTTTTTTCTAGTTTACTTTTATTTATCAATTATATATTAAGTTTTTTTTAAAATTTTTTTTAGAAATTTGAGTTGGCATACATTAAAAGAAAAGGGATTAGAAACATAAGAATAAAGTGTGAACATAGGATTAAAAACGAAGAAGATGACAAAATTATTGGTTGTGATTGATTTAAATGGAAAGTAAATAGGATAAAAATGGGGGGTAGAAATGGAAAAGAAAAAATAATTTTAATCTTTCTTTATATGAATGAATGGAAAGTAAGGGAGATATAAATAATAAAAATCAAGTAGAAAAAGAAATTGTTTAAATGTTATAAGTAACGGGAAAATACATCATAAATGACATATATTCATATATGAAAGATGTTTACAATGTTCTAGATATGTCTAAGTCTAAGGAAATAACTCCATAACCAAATGAATAGTATTAAATTGGAAAGTAAAAATAAATTGTAAAAATTATACCCTTTTCACCATTTTCTTGACAATCGACAGGTATCAAAAGTAGTCGTAGTATGGCACAAGGAGAAAAAAATATTTTAGTTTTTTCTATTAACGTTGGAGTGTAGAAAACAATAAAATGCAAGCTTAACTTACAGCTTTTTTAATCAAAAATCGTTGGTTGTTTTACCTGTCTCCAAATAATTTCATCCTACATTTCTCATATAAAACTAGAACTATCCCATACCAAGTAAATTAAAGATTAAATAAATAAAATAAATTTAAAATTAACTCACATGTATATAAAAAAAACACAAGTTGTTACAATTTTCATCACCAAAATTTCTCACTTTTGTCTTAATCTTGATGGTGCTCTCCCACATCTATTTGATGCTGTTCCTTTATTTCCTTTATTCACAAAAACAAAAATTACTGAGTACGTATATAATAGTAATTTCAACGTTTGAAACTATCTTACTATGGGTATATATATACCCACTAAATTATGTGTTTATTCCAATATAAAAATATGTTCTCTAAATTATAGTTAAATTCTTAAAACATGGCAGATTGAATTTATAATTTATAAATGGTGTGCTCGTTAAAATTTGAATTTGAAATATTTAAATCTTTAACTGAATAAAATATAGATGGAAGTGTTGGGGGCAGTTTGAAATAGAAACCTTAATTGTACGGAGAACAAATGGCGCATGTTGCCCACTAACCGTCAAAACCGACAAGAGTGGGGGGAGAGAGCAATCCTCTGCATGGAGTCCACCTACGCCCCCAAAAGGCCTCTCCAACCAGATATTGCCACGTCAGAAAGATGAGAAAAGAAAAACATGCATATCCATATTTGAAAAAGATTTAGTGTGGTGTGGGTGAAGATTGAGGAAGAAGCATTGAAA


Gene Sequence:
>Vu_14214(-)
ATGGAAAGAGAGTTGGAGAGAGGGTACGTGAAGAAGGGACCATGGAGTAGAGAAGAAGATGAAGTTCTTCTGAGACATGTCAGAAAGTATGGTCCAAGAGAGTGGAGCTCCATTCGATCCAAAGGCTTCTTGCCACGAACAGGAAAATCTTGTCGCCTTAGATGGGTTAACAAACTTAGACCAAACTTGAAGACGTCAGTTTACTTCTTTCTCTCTCTCATCCTTTTCTTTGCATGCATGCATGCATGAATTCTTGTTGTGTTAGTGTTAACCTCTGCATGACTCGTAGTATAAGAACTTTGGTGCTTTGTTACCAGTATTAGTGACAAAGTTATCTGTTTGTTTATCCTATGATCTGTCCCACAGAGTTTGATCATGCAGAATCTGACTCTGAGGGAAAACTATGAAGAAAACCAGATTCATTTTTCGATCTAAAATCTGATGTAACATCCTGGGTTTTCCCCCTCTTTCAGTCCAATCTATGAAACTATTATTAATTCAAAAGTGATTTTGATTGCTACTATTGATAATGACGATGGTGTTGGTGTTGGTGTTGTAGTAGTACTAATGATGATGCGATGATGTACACATTTTGATTGTTTTGTTTTACGAGGAAAGTTTGGAATGTGTAGTGGATGCAAGTTTTCGGCAGAAGAAGAGAGATTGGTGATAGAAATGCAGACACAGTTCGGGAACAAATGGGCCAAAATTGCAACGTATTTGCCGGGGAGAACGGACAATGATGTGAAAAACTTTTGGAGCAGTCGGAGAAAAAGGTTGGAGAGGATGTTGCAGAAGCCAACAACGTTAAAGTTGCAGAAAAGCAAGGGAAAAACTCCTCTTACTCAAGTGCTAGCGGATAAGGTATATGTATCTATTCAGTGTCCATATAAAGAATGTGTAATATATAGATATAACACTTCGTTTTTGTTGTTGGACCCTCCTAAGTTTGGGAGAGTCTTTACTACTAAAGTGGTCAGAAATTACACACATTCAGGGTTTTGTAACCATTGGTTTTGCCTTGTATTATTACACATTTTGCTTTTGTGAAGAAACGGCAATAGAATACCGATTGCATGTAATTCATGATTAATGGGGAAGTGAAAAATGTTTTATCACAAGCTTAGATGTGTCAGCACTGTAGCAGGGTTTTCGCATCTTTTATAAAATGCTCTATTTAATACATAACATAGCTATTTCAGGCACCTCCATGCAGTTCAAACCAGGTGGAGGAAAACCTTTGTTACACTACTTCCTACATGGGACACACCGAGGTGTTCGAGATGATCAACCTTCAAGATTTGGTAAAGCCAAACTATCAGCAGATGGAAAATGATTACTTGAGTGCAGTTGAGGTTGAGGCCACCCCACTTCACACAGTACCATCGTTTGAGTCTTCATCAGGGAACAACTTCCCTGTGCTCCCTGAGCCACTAATCGACTTTCCACTCTTCCCAGAATGCCAGGACCTTGTTCCAGAGACCTTTGATCCAAATTTTATTGATGGGTTCAACGAGAAGAAATGTTCAGAATTTGTATGCAGCCAGAAGCTTGGGACCGGGTTGCCAACTCTTGGATTGGAGGAAAATTATCAAATTACAACTTCAAACGTCTTATTCAAGGACTTCCCAAGTGAGATTTTTGAATACTTTGAGCAGATTCCAACCTCAACAAAACAATGA