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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14197 LG3 44798019 44800741 hypothetical protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 44798022 missense_variant p.Ala2Thr
C/T 44798061 synonymous_variant p.Leu15Leu
A/G 44798087 synonymous_variant p.Ser23Ser
T/A 44798123 synonymous_variant p.Gly35Gly
C/T 44798148 synonymous_variant p.Leu44Leu
G/A,C 44798211 missense_variant p.Glu65Lys
A/T 44798216 synonymous_variant p.Ser66Ser
C/G 44798228 missense_variant p.Asp70Glu
G/A 44798313 missense_variant p.Glu99Lys
A/T 44798314 missense_variant p.Glu99Val
T/A 44798376 missense_variant p.Tyr120Asn
A/T 44798456 synonymous_variant p.Leu146Leu
G/A 44798497 missense_variant p.Arg160Lys
A/C 44798619 missense_variant p.Ser201Arg
C/T 44798680 missense_variant p.Ala221Val
A/T 44798790 missense_variant p.Thr258Ser
A/T 44798807 missense_variant p.Arg263Ser
C/T 44799083 intron_variant
G/A 44799132 intron_variant
T/A 44799160 splice_region_variant&intron_variant
G/T 44799310 stop_gained p.Glu341*
T/A 44799469 missense_variant p.Ser394Thr
T/C 44799479 missense_variant p.Leu397Ser
G/A 44799514 missense_variant p.Val409Met
A/G 44799519 synonymous_variant p.Gln410Gln
A/G 44799682 missense_variant p.Thr465Ala
T/A 44799763 missense_variant p.Cys492Ser
C/G 44799864 missense_variant p.Asn525Lys
C/A 44799867 missense_variant p.His526Gln
G/C 44799974 missense_variant p.Cys562Ser
G/A 44799991 missense_variant p.Gly568Arg
A/T 44800059 missense_variant p.Leu590Phe
T/A 44800194 intron_variant
G/A 44800346 intron_variant
G/A 44800451 intron_variant
G/A 44800462 splice_acceptor_variant&intron_variant
A/T 44800466 missense_variant&splice_region_variant p.Ser626Cys
G/A 44800472 missense_variant p.Ala628Thr
A/C 44800474 synonymous_variant p.Ala628Ala
G/T 44800568 stop_gained p.Glu660*
C/T 44800725 missense_variant p.Thr712Ile

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14197.1
MASLTFPFPYSYVVLLIVLLFLSSLFTATSSNCGGSSVNLTSSLNSKDSTTAWNSPSGHFAFGFESVLYDNKEFMSVLAVWFAKDPNKTMVWYAKPGKEKTHLFPLGSTVNLTSKGIVVYDPKGHDMLWQRPENNTDSLVSCAFVLDNGSFELVDDDGKRVWESFEEPTDTILPGQNLSRPRSFRARQSDTSFDDGNFELSWQGDSNLVLYHSPKSSNDDAESSQSPTHDAYWATGTVGTESQLFFDESGHMYIKNGTGTVIRDITNGGSDEFFYMARIDPDGVFRLYRHPKDENKAVANSCSSTWWSVEQKHPDDICLSFTKQTGNVICGFNSYCVSSGERTNCECPEHYSPFEHDNLIGCRPDFPLPSCNRDGWEQNKDLVDFNEYPNLDWPLSDYDKFETGMDKDLCKQRCLEDCFCAVAIYGDGSCWKKKYPMSNGRKHANVTRIAFVKVPKTDLNNDEKEQTTLVIVISILLGSSVFINVLLLVALFAAFFIFYHKRLLNSQNLSVGTVSHFTYKELEEATTGFKQMLGRGAFGKVYKGVLRSNASRYVAVKRLDKVVQEGEKEFKTEVSVIGQTHHRNLVRLFGYCDEGEHRLLVYEYMSNGSLAGFLFGISRPHWNQRSSVAFALESEEEALIDWAYRCYSQGNVAKLVENDEEAKDDMKRLEKHVMVAIWCIQEDPSLRPSMKKVTQMLEGVTTVSVPPCPSIFTSSSF*


CDS Sequence:
>Vu_14197.1
ATGGCTTCTCTAACTTTTCCTTTTCCTTATTCGTACGTTGTTCTGCTGATTGTTCTCCTCTTTCTCTCATCTTTGTTCACTGCTACTTCTTCAAACTGTGGTGGTTCTAGTGTGAACTTAACCTCCTCTCTAAACAGCAAAGATTCAACGACAGCATGGAATTCACCTTCTGGCCACTTTGCCTTTGGTTTCGAATCAGTTCTATACGACAACAAGGAGTTCATGTCCGTGCTTGCAGTTTGGTTTGCCAAAGACCCCAACAAAACCATGGTTTGGTATGCAAAGCCAGGAAAAGAAAAAACTCATCTTTTTCCGTTAGGATCAACAGTGAATCTCACAAGCAAAGGAATTGTCGTGTATGATCCAAAGGGTCATGACATGTTGTGGCAACGTCCAGAAAACAACACTGATTCTTTAGTATCATGTGCTTTTGTGCTAGACAATGGAAGTTTTGAGCTTGTGGATGATGATGGGAAGAGGGTTTGGGAGAGCTTTGAGGAGCCCACAGATACTATTTTGCCTGGTCAGAATCTGTCTAGGCCTAGAAGCTTCAGAGCACGCCAATCTGACACGAGTTTTGATGATGGGAATTTTGAACTCAGTTGGCAGGGTGATAGCAATTTGGTTCTTTACCATTCTCCAAAATCAAGCAACGATGATGCTGAAAGCTCTCAGTCTCCAACACACGACGCTTACTGGGCCACTGGAACTGTCGGAACTGAATCACAGCTTTTCTTTGATGAGTCTGGACACATGTACATAAAAAATGGCACGGGCACAGTGATCAGAGATATCACAAATGGTGGATCTGATGAGTTCTTTTACATGGCTAGAATTGACCCTGATGGGGTTTTCAGACTATATCGGCACCCAAAAGATGAGAACAAAGCTGTGGCTAATAGTTGCAGTTCAACGTGGTGGAGTGTGGAGCAAAAGCATCCAGATGATATTTGCCTTTCCTTCACGAAGCAAACTGGGAATGTTATCTGTGGTTTTAACAGCTACTGTGTTAGCAGCGGTGAGAGGACTAATTGTGAGTGCCCGGAGCATTATTCTCCTTTCGAACATGACAATCTCATAGGTTGTAGACCAGATTTTCCACTGCCCAGTTGCAACAGAGACGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCAACGAGTATCCCAATTTGGACTGGCCTCTCTCAGATTATGATAAGTTTGAAACTGGAATGGACAAGGATTTGTGCAAACAAAGGTGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGATGGAAGCTGTTGGAAGAAGAAGTATCCAATGAGCAATGGAAGGAAGCACGCGAATGTGACTAGAATAGCTTTTGTCAAGGTGCCTAAAACAGATTTAAACAATGATGAAAAAGAACAGACTACACTTGTGATTGTCATATCAATACTCCTTGGAAGCTCAGTGTTCATCAATGTCCTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAACAGTCAGAACCTGTCAGTTGGTACAGTCAGTCACTTTACCTACAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTCGAGGTGCTTTTGGAAAAGTTTATAAAGGGGTGTTGAGATCAAACGCAAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGGTTGTGCAAGAAGGTGAGAAGGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGAAACTTGGTTCGTCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTTTTGGTGTATGAGTACATGAGCAATGGTTCATTGGCTGGTTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGATCAAGTGTTGCATTTGCGTTGGAAAGTGAAGAAGAGGCACTCATAGATTGGGCTTATCGATGTTATAGCCAAGGGAATGTAGCTAAATTGGTGGAAAATGATGAGGAGGCAAAGGATGATATGAAGAGGCTGGAGAAGCATGTCATGGTTGCAATTTGGTGCATTCAAGAGGATCCTTCACTCAGACCTTCCATGAAAAAGGTTACACAGATGCTTGAGGGTGTTACAACAGTTTCTGTGCCACCTTGCCCTTCTATATTCACTTCATCTTCTTTTTAA


Promoter Sequence:
>Vu_14197::LG3:44796019-44798019(+)
TACATCTGCTTGGTAAACTGTCAGACGTGGATTTGAATTCCACTTTGTGATGTGAACGCTCGCCCACCACTTTGTAATTATGAATGTGAACGCTCGCCCACCACTTTGTAATTATGAATGTGAACGCTCGCCCACCACTTTGTAATTATGAATGTGAACGCTCGCCCACCACTTTGTAATTCCACTTTGTTTAATATCTACCAATGTTCGTACCAAATCTACCAAATTGGGCGCTCGCCCACCACAAGAGGACGCTCGTCCAGCACGAGAGGACGCTCGTCCAGAGAAGACTCTCAGCTGACGGTCGCCCACTCGCTCAGAACGCTTCCCAGGATAAGTGGACGCTCGTCCAAGAGTAGAAGCACGACCGGACGCTCGTCCCAGCCACGTACAAATGGACGCCCGTCCAGCCAGGTAGAAGAGAACGCTCGTCCTGTCATACGACGCTCGTCCTTCAGAAGTGGACGCTCAGAAGTGGATCCAGCAAGGAGAACAGGACGCTCGTCCGGAATTGGAACTGCAAAATTGGAACTGTCATTATCCATCAACCACTTTCAATCTTTTTCTTTTTGGAACTGCAAAATTGTATACAGATTTTTCTTTTTGGATTACAGAAGCCACTTCCTCATTTTATTGCCAGTTACACACCACTTCCTCATTTTATGTTGTACATATCAAACTAAATGTAATTTCAAACCATATTCAGAAGCTTGAATTCAAATTTGACCTTCATTTGATAACATCATATTACAATTTGTCCAAAGTGCTCTTCACATAAACTATCTAACAGAACACATCATGGACTTTTAAACAAAAAACATACAACAATGATATTAATCAATCCCAGAAAACATATCATTGTTATTAACATCTTCTCCCTTTTTTGACATTCCCTAACACATTTCTCCAGACTATTAATCTTCCTCCTTTGCCTTGCAATAGTACTAACAGTATCATCTACGCAATCTTCACTAAGCCATTTAAAGAAATTGCATCCTTGAAGTTCTTCATTTCTTGTCCGCTTGTAGTTAGGGCAGCCCCAGAATTGTTTCCCCTCGTTCTTAATTGTTTTTGCCACTCTCAACACAGCAGCCTCCCCACAGTGGCATATTTGGCTTCCAACCAATCCTCTGGATGAACCACCACGACAGCTCCCCCATGAGCAAGACGAACAACCCTGATTCGAAGACATTGCCAACCCCAAACAGCGAACCCAAAAGAGCAAACCCCAAACAGAGACAACCACTGACAACGAAGAACAACTCGCCAACCGCGAACCACCACTGCTCCGTCTTCCCGCGATCACTGCCTGCCTCTGTCTTCTTTCTCGCACACGGACATGCCCTAATCTCGAACAAATGCACTGACAATGGGGCACACAACACAGACAAACCACAAAATAAATCAAAACTTCTGGGGGGACCACACTGAAAGCAACGAAACACAGAACAAAACCTACCATAAACGCACCTTCGAAAGTCGCTTTTTGGTTTTCGTTATTTACCCCACCACTGCTCCGTCTTCCCGCGATCACTGCCTGCCTCTGTCTTCTTTCTCGCACACGGACGTGCCCTAATCTCGAACAAATGAGCCCCAAATCCTTTATCCCCAATTTTTAATAGGCACGAATTTGAAAATGGGGAACCCTAACACCACGTAAGCACCGTATTGACACCTCACCAAATACAACTGCCACATCATCAGTCCACTAACTCCGTTTCCTTCTATTTAACGGAAGGGACTGATTAGAGTCAATTAATTACAAGTAAGGATCCATTCAACTCACTTTTCTATAAAGGGACTAATTTGAGATTTCCGAACCAAAGTGGGGACAAAATTGGGTATTTTGCCTTTTGTTATCATACAAAGCTAAGAAACAAAAAGCTTAAAGACAAAGACCATATCAAACAATACAGTGGCAGGAGACCACGACAACATATCATATGCTATAAAAATGTTGTTTGATGAATCAAAATTCATAGGTTGGTTGATAGCTACGA


Gene Sequence:
>Vu_14197(+)
ATGGCTTCTCTAACTTTTCCTTTTCCTTATTCGTACGTTGTTCTGCTGATTGTTCTCCTCTTTCTCTCATCTTTGTTCACTGCTACTTCTTCAAACTGTGGTGGTTCTAGTGTGAACTTAACCTCCTCTCTAAACAGCAAAGATTCAACGACAGCATGGAATTCACCTTCTGGCCACTTTGCCTTTGGTTTCGAATCAGTTCTATACGACAACAAGGAGTTCATGTCCGTGCTTGCAGTTTGGTTTGCCAAAGACCCCAACAAAACCATGGTTTGGTATGCAAAGCCAGGAAAAGAAAAAACTCATCTTTTTCCGTTAGGATCAACAGTGAATCTCACAAGCAAAGGAATTGTCGTGTATGATCCAAAGGGTCATGACATGTTGTGGCAACGTCCAGAAAACAACACTGATTCTTTAGTATCATGTGCTTTTGTGCTAGACAATGGAAGTTTTGAGCTTGTGGATGATGATGGGAAGAGGGTTTGGGAGAGCTTTGAGGAGCCCACAGATACTATTTTGCCTGGTCAGAATCTGTCTAGGCCTAGAAGCTTCAGAGCACGCCAATCTGACACGAGTTTTGATGATGGGAATTTTGAACTCAGTTGGCAGGGTGATAGCAATTTGGTTCTTTACCATTCTCCAAAATCAAGCAACGATGATGCTGAAAGCTCTCAGTCTCCAACACACGACGCTTACTGGGCCACTGGAACTGTCGGAACTGAATCACAGCTTTTCTTTGATGAGTCTGGACACATGTACATAAAAAATGGCACGGGCACAGTGATCAGAGATATCACAAATGGTGGATCTGATGAGTTCTTTTACATGGCTAGAATTGACCCTGATGGGGTTTTCAGACTATATCGGCACCCAAAAGGTGTGTACCTATGAAACATCGACATTTCCATTTGTTTCATGTATATGTGTTTGATATGTATCTGTATCTGATACCTATATTATTCTATACTTTACTATATATGCGTAGGTGAAGGATCCAAAACTTTTAAAAATAGTTAAGAGAATCCAATAGAACTACGTTTGAGATAAAAGATATAGAACCATGTCAGTCTTAATGTTCCAGAAATATGTTCTTAATTTGAATTATGATGCTGCGTTTATCTGATTGTATCTGTGTTTCAAATACAGATGAGAACAAAGCTGTGGCTAATAGTTGCAGTTCAACGTGGTGGAGTGTGGAGCAAAAGCATCCAGATGATATTTGCCTTTCCTTCACGAAGCAAACTGGGAATGTTATCTGTGGTTTTAACAGCTACTGTGTTAGCAGCGGTGAGAGGACTAATTGTGAGTGCCCGGAGCATTATTCTCCTTTCGAACATGACAATCTCATAGGTTGTAGACCAGATTTTCCACTGCCCAGTTGCAACAGAGACGGGTGGGAGCAGAATAAGGATCTTGTAGATTTCAACGAGTATCCCAATTTGGACTGGCCTCTCTCAGATTATGATAAGTTTGAAACTGGAATGGACAAGGATTTGTGCAAACAAAGGTGCCTTGAAGATTGCTTTTGTGCTGTGGCCATATATGGTGATGGAAGCTGTTGGAAGAAGAAGTATCCAATGAGCAATGGAAGGAAGCACGCGAATGTGACTAGAATAGCTTTTGTCAAGGTGCCTAAAACAGATTTAAACAATGATGAAAAAGAACAGACTACACTTGTGATTGTCATATCAATACTCCTTGGAAGCTCAGTGTTCATCAATGTCCTTCTACTTGTTGCTTTGTTTGCTGCTTTTTTCATTTTCTACCACAAGAGGCTTTTGAACAGTCAGAACCTGTCAGTTGGTACAGTCAGTCACTTTACCTACAAGGAGCTTGAAGAAGCAACCACAGGGTTCAAACAAATGTTGGGTCGAGGTGCTTTTGGAAAAGTTTATAAAGGGGTGTTGAGATCAAACGCAAGCAGGTATGTTGCTGTGAAGAGGCTAGACAAGGTTGTGCAAGAAGGTGAGAAGGAGTTCAAAACAGAAGTGAGTGTGATTGGACAAACCCACCACAGAAACTTGGTTCGTCTGTTTGGTTATTGTGATGAAGGGGAGCATCGTCTTTTGGTGTATGAGTACATGAGCAATGGTTCATTGGCTGGTTTTCTCTTTGGGATCTCAAGGCCTCATTGGAACCAAAGAGTGCAAATTGCTTTGGGGATTGCAAGGGGGCTCACGTATTTGCATGAAGAGTGCAGCACTCAGATAATTCACTGTGACATAAAGCCTCAGAATATACTCCTGGATGAGTTTTTCACTCCAAGGATTTCTGATTTTGGCTTGGCAAAGTTGTTGCTGGCTGAGCAAACTAAAGCTGCTAGAACTGGTTTGAGAGGGACAATTGGTTACTTTGCACCAGAATGGTTTAGGAAAGCTACAATCACAACCAAAGTAGATGTTTACAGTTTTGGAGTGGTGCTGTTAGAGATCGTATGTTGCAAGTCAAGTGTTGCATTTGCGTTGGAAAGTGAAGAAGAGGCACTCATAGATTGGGCTTATCGATGTTATAGCCAAGGGAATGTAGCTAAATTGGTGGAAAATGATGAGGAGGCAAAGGATGATATGAAGAGGCTGGAGAAGCATGTCATGGTTGCAATTTGGTGCATTCAAGAGGATCCTTCACTCAGACCTTCCATGAAAAAGGTTACACAGATGCTTGAGGGTGTTACAACAGTTTCTGTGCCACCTTGCCCTTCTATATTCACTTCATCTTCTTTTTAA

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