Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14187 LG3 44718636 44721691 PREDICTED: transcription factor bHLH130-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 44718642 missense_variant p.Arg3Gly
C/T 44718675 stop_gained p.Gln14*
G/C 44718699 intron_variant
T/C 44718720 intron_variant
T/G 44718769 intron_variant
G/A 44718812 stop_retained_variant p.Ter22Ter
T/C 44718900 intron_variant
T/A 44718902 intron_variant
T/A 44718911 intron_variant
G/A 44718928 intron_variant
C/T 44719105 missense_variant p.His55Tyr
T/C 44719189 intron_variant
A/C 44719199 intron_variant
G/A 44719205 intron_variant
A/C 44719268 synonymous_variant p.Thr70Thr
T/A 44719270 missense_variant p.Val71Glu
T/C 44719273 missense_variant p.Ile72Thr
G/T 44719282 missense_variant p.Ser75Ile
T/C 44719354 missense_variant p.Leu99Pro
G/A 44719358 missense_variant p.Met100Ile
G/A 44719406 synonymous_variant p.Lys116Lys
A/C 44719408 missense_variant p.Gln117Pro
G/A 44719447 stop_retained_variant p.Ter130Ter
T/A 44719552 missense_variant p.Leu165His
T/C 44719581 synonymous_variant p.Leu175Leu
C/T 44719600 missense_variant p.Pro181Leu
A/G 44719607 synonymous_variant p.Ser183Ser
C/T 44719797 intron_variant
G/A 44719930 intron_variant
G/C 44720017 intron_variant
T/C 44720064 intron_variant
A/G 44720080 intron_variant
A/C 44720126 intron_variant
T/G 44720260 intron_variant
A/T 44720289 intron_variant
C/A 44720306 intron_variant
T/A 44720349 intron_variant
G/A 44720369 intron_variant
C/A 44720381 intron_variant
T/A 44720460 intron_variant
G/A 44720504 intron_variant
G/T 44720509 intron_variant
G/A 44720515 intron_variant
G/T 44720605 intron_variant
T/C 44720635 splice_region_variant&synonymous_variant p.Asn202Asn
G/A 44720657 missense_variant p.Gly210Arg
A/G 44720659 synonymous_variant p.Gly210Gly
C/T 44720670 missense_variant p.Thr214Ile
C/T 44720689 synonymous_variant p.Cys220Cys
G/A 44720836 synonymous_variant p.Gln269Gln
C/T 44720914 synonymous_variant p.Ser295Ser
T/C 44720921 stop_lost p.Ter298Glnext*?
C/A 44720984 upstream_gene_variant
A/T 44721024 upstream_gene_variant
A/G 44721128 missense_variant p.Thr337Ala
T/C 44721148 synonymous_variant p.Tyr343Tyr
G/A 44721197 missense_variant p.Ala360Thr
A/T 44721233 splice_region_variant&intron_variant
T/C 44721239 upstream_gene_variant
G/T 44721265 upstream_gene_variant
T/C 44721268 upstream_gene_variant
A/G 44721372 synonymous_variant p.Ser389Ser
A/G 44721403 upstream_gene_variant
C/T 44721416 upstream_gene_variant
G/A 44721418 upstream_gene_variant
A/G 44721420 upstream_gene_variant
G/C 44721421 upstream_gene_variant
G/A 44721433 upstream_gene_variant
C/A,G 44721448 upstream_gene_variant
T/A 44721458 upstream_gene_variant
G/A 44721481 synonymous_variant p.Ala396Ala
A/T 44721549 upstream_gene_variant
C/T 44721622 upstream_gene_variant
T/G 44721623 upstream_gene_variant
C/G 44721628 upstream_gene_variant
C/A 44721671 missense_variant p.Pro426Thr
A/T 44721674 missense_variant p.Ser427Cys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14187.1
MVRTEFKKDCNRKQCFSFCSIGDQGNCGDKMSIVYSHAVKYSQEVTRMNTDMDSNIGQHCHQQNSGLMRSDSNNHQQQQQSYHPSTSSEMETMLAKLISSDDSEPLQEFGGKPVKEEAGDSGYSFGSSPQMMYQTQQVQGFSMPNGSLRPAGNGFDGSFSAVNSMASQNSTQTKMVASTNCSNLIRQKSSPAGFFSNYSVDNTMREVGSFRDCDVPNGQAIASGSGLHGTLNFSSRISSSSCSTRMPQIAENGNEVVEPNCVESRNLRNDSGNTKCYMPSFTSDFWDGSAISASRTATNNCEISFSTSNAMDIQNADFGYQKLGLTHHLSLPSSSTRMTTMEKLYQTQGTVPCKIRAKRGFATHPRSIAERERRTRISARIKKLQDLFPKSDKQTSTADMLDLAVEYIKDLQKQVKMLADTRAKCTCPSNQKQ*


CDS Sequence:
>Vu_14187.1
ATGGTAAGAACAGAATTCAAGAAAGATTGTAACAGGAAACAATGTTTCTCATTCTGCAGTATCGGTGACCAAGGTAACTGTGGAGATAAGATGAGCATTGTGTATAGCCATGCTGTGAAGTATTCCCAAGAAGTGACAAGGATGAACACAGACATGGATTCAAACATCGGTCAACATTGTCACCAGCAAAATTCTGGGCTAATGAGAAGTGACAGTAATAACCATCAGCAGCAGCAGCAGAGCTATCATCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCTGATGATTCTGAGCCTTTGCAAGAGTTTGGAGGGAAGCCAGTGAAGGAAGAAGCAGGGGACAGTGGTTACTCTTTCGGATCTTCACCTCAGATGATGTACCAAACTCAGCAAGTTCAAGGCTTTTCTATGCCAAATGGTTCTTTAAGGCCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGTTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCAGGGTTTTTCTCCAACTACTCAGTTGATAACACAATGAGAGAGGTGGGAAGTTTTAGGGACTGTGATGTACCAAATGGGCAAGCTATTGCATCCGGTAGTGGGTTGCATGGTACTTTGAACTTCTCATCAAGGATATCATCATCTTCTTGCTCCACCAGAATGCCACAGATTGCTGAAAATGGAAATGAAGTTGTGGAACCAAATTGTGTTGAAAGCAGAAACCTGAGGAATGACAGTGGCAACACTAAGTGTTACATGCCTAGTTTCACCTCTGACTTCTGGGATGGTTCTGCAATCAGTGCCTCCAGAACAGCTACTAATAACTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGAATGCAGATTTTGGATATCAGAAACTTGGTCTGACCCATCATTTGAGTCTTCCTAGCTCTTCTACCAGAATGACTACCATGGAGAAGTTATATCAAACTCAAGGAACTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGAAAGAAGAACAAGAATCAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGCAAACAAGCACAGCGGATATGTTGGATTTGGCTGTTGAGTACATCAAAGACCTGCAGAAACAAGTTAAGATGCTGGCTGACACTAGGGCAAAGTGCACTTGTCCAAGTAACCAGAAGCAATAA


Promoter Sequence:
>Vu_14187::LG3:44716636-44718636(+)
TTATTTACAGTAATTTATATTTAAATTTATAATTTTAAATGTTATATATGGTTAGTTTTTAAACGTAATAATTTTGTTAAAATATGAATTTGTTAAAATATGAATTTGTTAAAATATGAATTTGTTATAGGTGGAGAAGAAGCTTAACGGAAGAGAGAAAGGTAAACGAAAATGGAAGAGAGGAAGAGGTGCAGAGGAAAGTAAATCAGAAGTTTTAAATAAATTAAAATATTAAAATAATAAAAATAAAAAATTTTAACTTTTGAGGATATAATTGTCATTTTAGAAGGATATAATTGGCATTTTAGAAAATTGGGGAGGTGGAGGAAGAGACGTGTGGGGGTGGAGGGAGTAACACCCTTTATAAGAATTTTATAGAGTTAAGTGAGATACAAAAATGAAAAGTAAAACTCAATGGATAATATGATATGATGAAAAAACAAAATGAGATATAAAGTGTTGGAACAATATATTGTAAGAATAAAGTAACTCTATCCTTTCTAGTTTTCCATAAATTTATAACGAAAAGGAAGATTTCCTTAAATATGTTGAATCACGCTTATGCATCTAACCACTACAAACCTTCCTATAAAGTGTCTTTCTTCTGTAACTTAATTATGTTTATTAAGCAAAAGATGATCATTATAATAAACAATAGAACCATTTAGGAGATGATGGAAGAACATAATATAATGGTAAAGGTGATTGCCCCTAATCAAAGAACACTAAATGTCTCCTTAAATTATTCATCCTTAAACCAAGTATATCACTTTTATGTTAAATTTTAGGTTTAATCCTTTTCGACATCCCTATTTATGTACGAATGTCTCAATTGGGTCCTCGTTTTTTAAAGTGTATCAAAATGGTCCCTAATTTTGAAAATTGATATCAATTGAGTCCTTTCCGTTAAGTTGGCTGGACGACGTTAAAAAAATTGATGAGTGGATGCTGAGATGACGAACGAACGCTCGTCCACCAGCGAACGAACGCTTGTCGACCACCGAACGAACGGTCGTCCAGTGTGGAACGAACGGTCGTCCAGCAGTAAGAGGTCGACGAGCGTTCGTTCGCTGGTGGACGAGCGTTCGTTCGCTGGTGGACGAGCGTTCGTTCGTCATCTCAGCATCACTCATCAATTTTTTTAACGCCGTCCAGCCAACTTAACGGAAAGGACTCAATTGATATCAATTTTCAAAATTAGGGACCATTTTGATACACTTTAAAAAACGAGGACGCAATTGAGACATTCGTACATAAATAGGATGTCGAAAAGGATTAAACCTAAATTTTATTAAAAATTTAGACGTAAATTCAAGTTTTACGTTTACGTTTAATAAAAATGGAAAAGTAAAGTATTATATAAAAATAAAAATCAAATAATATAATGTTTTAAGATTTTGAGAAGAAAATAACGTTAATTCTTTGTTTGGTTGGACTCGGTATAAAAACAGAAGAACATTTAAAAAAAACATTTATTTATTGTATTACTAGAAAAAAAAGTTAATGAATGCACTTACTTTCTGTATGGAGTAAGCATGCATAAAGAAAGTCAGATTCAGAAACACACATTCTTAAGTTTGGCCAATTCACGGGGTAATATATGTTTCGTCAAAGGGAAGATTTTGAAGAAAAAAGAGATGAGAAAAAGACAAAACATTATCATGGACCACTTTATGTCATCGTGGTATCATCGTTATAACGAACAAACATAAGGGCATTAATCTCGCAACACAAAACTACATAAATATATCTCAAAGGTATCACATTATAACCTTAGCTTTCATCATCTCCTCAACTCTTCTCTTCTCGTTAATTCTGTGTAAACAATTTTCAGCTCTGATACAAACTCTTCAAGCTCAACAACCTTAGCTTCATTGCACTCTTAACAAGCCAAAATTTTTTGAGCTGCATGTATGCCCCTTCTGTTGATTTATTTTCCTTTTGAGCTGTTTTTTTCATTTTTTTAAAGATTTATGATCCAAAAGCTGCTACTCCTGTTA


Gene Sequence:
>Vu_14187(+)
ATGGTAAGAACAGAATTCAAGAAAGATTGTAACAGGAAACAATGTTTCTCATTCTGTATGAATGACACATTTTTTTTTCTGACTTTTGTCAGATTCTGCTGCTTTAAACTTTGCTGTGGACAGAATTTTCATTTCCCTTTGGAATTTTGGTCTTGAATTTTCCAGGCAGTATCGGTGACCAAGGTAATTACACAACAACCATGAACAAATTTTCCATGACAGAAACATGGTTAAACAAAAGGAAACATAAAGATGGTTTCTTTTTCTTTTCTTTTTCTTTGGGGTGCTTTTCGTTTTCTGGGAAAGCCATTGCTCAGTGTTAAGATATGGTTATTGGTTCCGAAAACATACCATGATAATTTTTGGTGTTGTTTTCAGGTAACTGTGGAGATAAGATGAGCATTGTGTATAGCCATGCTGTGAAGTATTCCCAAGAAGTGACAAGGATGAACACAGACATGGATTCAAACATCGGTCAACATTGTCACCAGCAAAATTCTGGGCTAATGAGGTACCGTTCTGCCCCAAGCTCATTGCTCACAAATCTTGTGAATAATAACAACAACAACGTCAACAACAATATCAACAACAACAACATTGGATGTGTCAATGATGAAACTTTCAGAAGTGACAGTAATAACCATCAGCAGCAGCAGCAGAGCTATCATCCCTCCACAAGTTCTGAAATGGAGACCATGTTGGCCAAGTTGATTTCTTCTGATGATTCTGAGCCTTTGCAAGAGTTTGGAGGGAAGCCAGTGAAGGAAGAAGCAGGGGACAGTGGTTACTCTTTCGGATCTTCACCTCAGATGATGTACCAAACTCAGCAAGTTCAAGGCTTTTCTATGCCAAATGGTTCTTTAAGGCCTGCAGGGAATGGTTTTGATGGCTCATTCAGTGCAGTGAATTCCATGGCTTCTCAGAATTCCACACAAACCAAAATGGTTGCTTCCACCAATTGCTCCAATCTCATTAGGCAAAAGAGTTCCCCTGCAGGGTTTTTCTCCAACTACTCAGTTGATAACAGTAAGACCTTTTCTTTCACTGTCATGGAATTTCATTTCAGTTAAACTTTCATATAAAGATTCTTACAATTTCTTAAGAAGTAACCAAAATATGCTTTTCAAAATAATTACTGTGAAACTAAACAACCTTACCATACATGAAAATCTATAATTGGTTTCATGTTGTTAGAGTATTCTATTACAGTCATTTCATTCTGTGTAAATTTTCTTCATCCTATGAATGATAATGTGTTCTCTCATATGGGTTAAATTCAAAAGGATTTTCCATGGAATTAATTTGGTCATGTGAATAGAAGAGGTTATTGGATCATATCTGATCTAAGATTCACATAAATTTTAAATTACTATTCTGCAAAGTTTGCTGATTAATTAATTGGCTTCAAGTCAAGTCAGATCCCTTTTTTTCCAGCAGTGTTACTAAATATAGTATAGCAATTGGGGGGTTGCTTGTGCAGAATATAAAACAGAATATCCATTTTCCTGCATAGAGAGTTGACTTTTGTTTTCACTGTTCTCATTGAGAAATTAAAATCTTTGAATAAGAAGAAAACTAATCATATAGTACGTTTGGGGAAAAGAAGATGTGAAGGGAAGAAATATCATGAAAGAATCCGAGAAATAAAAGCACAAGAGTTAGCTGTAAAACGTACTAAAAAATCTGGGTCACAAGGGGAATCCTGCAATTGTATGTATTTTCTTTTTCCTTTTGGGTATCAGTGGCAGATTCCAATCTCATGAATTGAGAAACAGACTTTAATAAACAGTTTCTCTCTCCAGTGTTAAACTCCCTCTCTTTCCTTTATCATTTTCTCTCTCAAAACTTCGTTATATACCTTAAATTCGGTAAGGTTTGTGTCCAGTTATATATTATAAACTTGTTTTATATTTAATCGAGATTTTTGCTGACAGTTGAAGTGATATTTAGTGATGTAAAGAGTGTAAACGTTTTGTTTTGGATGCAAATCTTGCAGCAATGAGAGAGGTGGGAAGTTTTAGGGACTGTGATGTACCAAATGGGCAAGCTATTGCATCCGGTAGTGGGTTGCATGGTACTTTGAACTTCTCATCAAGGATATCATCATCTTCTTGCTCCACCAGAATGCCACAGATTGCTGAAAATGGAAATGAAGTTGTGGAACCAAATTGTGTTGAAAGCAGAAACCTGAGGAATGACAGTGGCAACACTAAGTGTTACATGCCTAGTTTCACCTCTGACTTCTGGGATGGTTCTGCAATCAGTGCCTCCAGAACAGCTACTAATAACTGTGAAATATCATTTTCCACTTCAAATGCAATGGATATTCAGGTATTGAATGAATGAGACATTGTGTGATGATTCATGTAGCCAAACTCAGTTAGCAAAAGTTGTTGATATGTGAAAACTTATGTTCCCAGAATGCAGATTTTGGATATCAGAAACTTGGTCTGACCCATCATTTGAGTCTTCCTAGCTCTTCTACCAGAATGACTACCATGGAGAAGTTATATCAAACTCAAGGAACTGTTCCATGCAAAATTCGTGCCAAGAGAGGTTTTGCCACTCACCCAAGAAGCATTGCTGAAAGGGTAAAAATCTCATACGGTTCTACTGATCCTCTTCATTTGCCTAGTGCTGATCTTCTTCTTGTGTTATCTTGATGTGCATATTTCAGGAAAGAAGAACAAGAATCAGTGCAAGAATCAAGAAATTGCAAGACCTTTTCCCAAAATCAGACAAGGTAAACTAACTCTCTCACTAGAAAATCACATTGTTGACTGAAGCTTTTCCATGTGCACTTTGATGACTTCATGCTTCCCTCTTGGCAGCAAACAAGCACAGCGGATATGTTGGATTTGGCTGTTGAGTACATCAAAGACCTGCAGAAACAAGTTAAGGTACTGCAGAATTATAATCTTCACTTAAATCCTTATAGAAAAGCAATCCCTTCACCATAATCTTCATTTTCTAACTAATCAAATAACTAACTCATGTTGCAGATGCTGGCTGACACTAGGGCAAAGTGCACTTGTCCAAGTAACCAGAAGCAATAA