Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14067 LG3 42887882 42889135 hypothetical protein PHAVU_011G181600g
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 42887885 missense_variant p.Thr2Ala
C/A 42887894 missense_variant p.Leu5Ile
T/C 42887899 synonymous_variant p.Val6Val
C/T 42887909 missense_variant p.Leu10Phe
T/C 42887919 missense_variant p.Val13Ala
G/C 42887927 missense_variant p.Glu16Gln
A/G 42887929 synonymous_variant p.Glu16Glu
T/G 42887932 synonymous_variant p.Val17Val
C/G 42887939 missense_variant p.Gln20Glu
A/G 42887944 synonymous_variant p.Lys21Lys
C/T,A 42887975 missense_variant p.Arg32Ser
G/A 42887982 missense_variant p.Arg34Lys
A/G 42887983 synonymous_variant p.Arg34Arg
A/C 42888006 missense_variant p.Asn42Thr
C/T 42888018 missense_variant p.Thr46Ile
C/A 42888026 missense_variant p.His49Asn
C/A 42888031 synonymous_variant p.Ser50Ser
C/A 42888035 missense_variant p.His52Asn
G/T 42888044 missense_variant p.Ala55Ser
G/C 42888047 missense_variant p.Asp56His
C/T 42888049 synonymous_variant p.Asp56Asp
G/A 42888059 missense_variant p.Gly60Arg
T/G 42888073 synonymous_variant p.Thr64Thr
T/C 42888095 synonymous_variant p.Leu72Leu
T/C 42888100 synonymous_variant p.Leu73Leu
A/G 42888102 missense_variant p.Lys74Arg
G/A,T 42888103 missense_variant p.Lys74Asn
T/G 42888125 missense_variant p.Ser82Ala
C/T 42888126 missense_variant p.Ser82Leu
C/T 42888160 synonymous_variant p.Ser93Ser
G/C 42888191 missense_variant p.Glu104Gln
C/T 42888201 missense_variant p.Thr107Met
A/G 42888203 missense_variant p.Ser108Gly
A/T 42888209 missense_variant p.Thr110Ser
T/C 42888221 synonymous_variant p.Leu114Leu
G/C 42888223 missense_variant p.Leu114Phe
C/G 42888232 missense_variant p.Phe117Leu
A/T 42888235 missense_variant p.Lys118Asn
C/T 42888239 missense_variant p.Pro120Ser
A/T 42888245 missense_variant p.Ile122Phe
G/T 42888269 stop_gained p.Glu130*
T/C 42888288 missense_variant p.Ile136Thr
A/G 42888296 missense_variant p.Asn139Asp
A/G 42888297 missense_variant p.Asn139Ser
C/T 42888310 synonymous_variant p.Leu143Leu
T/A 42888313 synonymous_variant p.Ser144Ser
G/A 42888315 missense_variant p.Ser145Asn
C/T 42888328 synonymous_variant p.Asp149Asp
C/T 42888345 missense_variant p.Ala155Val
G/A 42888348 missense_variant p.Ser156Asn
G/T 42888350 missense_variant p.Gly157Cys
T/C 42888359 missense_variant p.Ser160Pro
T/A 42888376 splice_region_variant&intron_variant
C/A 42888377 intron_variant
G/A 42888385 intron_variant
A/T 42888400 intron_variant
G/T 42888403 intron_variant
T/G 42888409 intron_variant
G/A 42888414 intron_variant
C/T 42888417 intron_variant
T/A 42888418 intron_variant
T/C 42888421 intron_variant
A/G 42888422 intron_variant
C/G 42888437 intron_variant
C/G 42888449 intron_variant
C/T 42888454 intron_variant
T/C 42888468 intron_variant
A/G 42888469 intron_variant
C/T 42888472 intron_variant
A/T 42888477 intron_variant
T/A,* 42888482 intron_variant
A/G 42888486 intron_variant
C/T 42888495 intron_variant
T/A 42888502 intron_variant
G/A 42888534 intron_variant
T/C 42888577 intron_variant
T/A 42888646 intron_variant
C/G 42888680 intron_variant
T/C 42888682 intron_variant
G/A 42888719 intron_variant
A/T 42888728 intron_variant
T/C 42888760 intron_variant
C/T 42888808 missense_variant p.Arg168Trp
C/A 42888814 missense_variant p.Gln170Lys
A/C 42888840 stop_lost p.Ter178Tyrext*?
T/G 42888843 synonymous_variant p.Thr179Thr
G/A 42888866 missense_variant p.Arg187His
G/A 42888871 missense_variant p.Val189Ile
C/T 42888881 missense_variant p.Pro192Leu
C/T 42888889 stop_gained p.Gln195*
A/G 42888931 missense_variant p.Thr209Ala
G/A 42888935 missense_variant p.Cys210Tyr
G/A 42889048 missense_variant p.Glu248Lys
A/G 42889051 missense_variant p.Asn249Asp
A/C 42889060 missense_variant p.Lys252Gln
C/G 42889065 missense_variant p.Ile253Met
T/G 42889082 missense_variant p.Phe259Cys
A/G 42889135 splice_region_variant&synonymous_variant p.???277???

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14067.1
MTLELVGGALLSVFLEVAFQKLASPQILDFFRARKLDQKLLNKLETKLHSIHSLADDAEGKQFTDPHVRNWLLKVKDAVLDSEDLLDDIQMLSKRKVDDDSESETFTSCTCKVLNFFKSPPISSLNKEIESRMEQILDNLEFLSSQKGDLGLKTASGVGSGLNVQLVFGAKGSRILVTKLSKEVASTVGSKDHSLKQLQEDDCWKLFAKHAFRDDDTQPKDDCRKLFAKHAFRDYDTQPNPECKEIGMKIVKKSKGLPLSLKTMGSLLYKKSSISE*


CDS Sequence:
>Vu_14067.1
ATGACATTAGAACTTGTTGGTGGTGCTCTTCTTTCTGTTTTCCTTGAAGTTGCATTCCAGAAACTAGCTTCTCCCCAAATTCTCGATTTCTTTCGTGCAAGAAAGCTTGATCAGAAGCTGCTGAACAAGTTGGAAACCAAGCTGCATTCCATCCATTCTCTGGCTGACGATGCAGAGGGAAAGCAGTTCACTGATCCACATGTCAGAAACTGGTTGCTTAAGGTCAAAGATGCTGTCCTTGATTCAGAGGATCTCTTGGATGATATACAAATGCTCTCCAAAAGAAAAGTGGATGATGATTCTGAATCTGAAACCTTTACGAGCTGTACTTGCAAGGTATTGAATTTCTTCAAATCTCCTCCTATTAGTTCCCTTAACAAGGAAATTGAGTCTAGGATGGAACAAATCCTTGACAACTTAGAATTTCTCTCTAGCCAAAAGGGTGACCTAGGATTGAAAACAGCTAGCGGTGTTGGATCTGGATTGAACGTGCAGCTTGTTTTCGGAGCCAAGGGGAGTAGGATTCTTGTGACTAAACTTAGTAAGGAAGTTGCTTCTACCGTGGGGTCAAAAGACCACTCCCTCAAGCAATTACAGGAAGATGATTGCTGGAAGTTGTTTGCTAAACATGCATTCCGAGATGATGATACTCAACCAAAAGATGATTGCCGGAAGTTGTTTGCTAAACATGCATTCCGAGATTATGATACTCAACCAAATCCAGAGTGCAAGGAAATTGGCATGAAAATTGTTAAAAAATCTAAAGGACTACCTCTTTCCTTGAAAACAATGGGAAGTCTATTATATAAAAAATCATCTATTTCAGAATGA


Promoter Sequence:
>Vu_14067::LG3:42885882-42887882(+)
CTACGACAATACACCCTATTTACGTTCTATTAAGGACTTCAATATTTAACTGTAATAAACAGTTCATAAAACCGCTCCTAACTTGAGCGTCGGACTGAGTGGCCACTATTGAAGGTGACCGATCGGTCCAAACTTAAAGCCGACCAGCGAAGCGTACCAGTCGAAGGTTAGTGTCTCGGTCTCACAATCCCTACCGAAACAAAGTATAATTAAAATTGAGTTCTTTGTTCAAATTAAAGATTCTTGGTCCTCTCGTATATTTGTTAGGCCTAAAAATTGTCAAATCTAGCAAGAGTGTCTCCTTGAGTCAAATAAAATATACCTTATCTGCTTGATTATATTATGTTTTTAGATAGCAAACCAATTACACTATCTATGGATCCAATTTTAAAACTTAGCGTCAATGTTGGTTACCTTATTAACGATCCCTTTGTGTATAGAGGATTAATTGTAAGGATTTTGTACTTTGATACTTTCCAAACCGTACATGAATTTTGCAATTCATAAGCTTATTCACTACATGCATAATCAATTAACCACACATTTTGTTGGAAACCATCACTTGTATTATACTTGAAGTCCACACTAGTAAAGGTTTCTTCTTCCCGATCAATAACAAACTTTATCTTTCAGCTTGTACTAATGTGATTGGGGCAATTATTTAGATATTAGAAGATCAATAACCAATTTTTATGTTTTCCATAGTGATTCTCTAATTTATGTCAAGGTTTTTAGCATAATTGCCATTGTAGTAGTTTGACTACAATGATTACCCCAACATTTTGTGGTTTCAATTGGTCCAATTATATATATATATATTTTGTGAGAACAAATTTGTCATGCATATTGCTTTCAATCTCTCTCATCATAAGAGGTATATAGATATTGACTACCGCTTTATTTTGAACCGGTTAAAAAAGAACTATTGTCTCTCATTTATGTTAGAAGTGTGCATCAAATAACTAATATATTCATAAAAACTCTTGCAACTACTACTTTTGATAATTATTTCATTTACAAATCGAAAATCATTAACATTTATTTTACAACTTAAAATATATTAAAATAAAATATAATTAAATATTATATCTAATCAATTATTTAGTTTGTAAATATTATATATATATATATATATATAATATTATGATAAATTATTTTATTTTCTGAGCTTATTAATATGTTTTACTATTATAGATATCTATTATTTTTATTTAAACTGTTTCAGGTATGAGATCAATATGAGCAGTCTAAATTGAGTTGTGATGTCCAAAGTCCAAATAGTATTGAGAAAGTAAATTTCGGTTCATCCAAACCATTTGGAGGGTATCCCTAAAAAATACTCTAATATCAAAATCATTTTAATATTAACAAATAATAATTTATGCGAAGTTAATGCACGTAACCTATTTCTTTACCTCTTGTTTATAAGTTTTACAATAAATTTTTAATTAACGTTGATATAATTATTGTATAATTATACTTTAATTTTAAATTAGTTAATTTGTTCGATAACTATTCCTATCGATGGACCCATCGATTGGTCTCGTTGTCTTGTCATTGATTGACAATGCGGATTGATAAATGACCGTCCAACTTGCTTGTTGTTTGACCATCTCGATAACTCGTGTTTCAAAGCTACGGGGTATTCATTTGAATTCATTGGTTAACCACTTAAACAACTGTAATTGACCAAGCTGACCGAATAATTATAAAGTACATAAACTATGCATATTGATTAATTGAATGAGTTATTTTAACGTGTTCTTTAATATATCTCTTAATCTAAACAATTTGCTTATTTAGTTGATAGTATAACAACGATACCCACTCATTCATAAATGGAATACAGCTGGTAAAGTATGTGATGTACGGAATACTCAGTAGTTATTGGTTGACTAAAATCATCGAAGAAGAAAACACTGGTCAAATATATTATTGTCTATTTCATTCTTACATCAACCCATTTGAATCACTCAATCCCATTCATCCTTGTCTTACCA


Gene Sequence:
>Vu_14067(+)
ATGACATTAGAACTTGTTGGTGGTGCTCTTCTTTCTGTTTTCCTTGAAGTTGCATTCCAGAAACTAGCTTCTCCCCAAATTCTCGATTTCTTTCGTGCAAGAAAGCTTGATCAGAAGCTGCTGAACAAGTTGGAAACCAAGCTGCATTCCATCCATTCTCTGGCTGACGATGCAGAGGGAAAGCAGTTCACTGATCCACATGTCAGAAACTGGTTGCTTAAGGTCAAAGATGCTGTCCTTGATTCAGAGGATCTCTTGGATGATATACAAATGCTCTCCAAAAGAAAAGTGGATGATGATTCTGAATCTGAAACCTTTACGAGCTGTACTTGCAAGGTATTGAATTTCTTCAAATCTCCTCCTATTAGTTCCCTTAACAAGGAAATTGAGTCTAGGATGGAACAAATCCTTGACAACTTAGAATTTCTCTCTAGCCAAAAGGGTGACCTAGGATTGAAAACAGCTAGCGGTGTTGGATCTGGATTGAGTAATGATCTGCCACAGAAATCACAAACAACATCGTTGGTTGTTGGAACTGATATTTATGGCAGAGATCATGATAAAGAACTGATCTTTGACTGGCTGATATCCGACAACAACTATCATAACCAGCCATCAATTCTTTCTATTGTGGGAATGGGAGGGGTGGGCAGGACCACTCTTGCTCAACATGTATTCAATGACCCAAGAGTAGATGAGGCTAAATTTGATGTCAAAGCTTGGGTTTGTGTTTCAGACGAATTTGATGTTTTCAAAGTATCAAGTGCAATTCTTGAGGCTGTTACTGAATCAACCGATCATAGTAGAGATCTAGAGATGATTCACAGAAGATTGAAAGAAAAATTGACTGAGAAGAAATTTCTTCTTGTTTTGGATGATGTTTGGAATGAAAACCAATCTAAATGGGAAGACGTGCAGCTTGTTTTCGGAGCCAAGGGGAGTAGGATTCTTGTGACTAAACTTAGTAAGGAAGTTGCTTCTACCGTGGGGTCAAAAGACCACTCCCTCAAGCAATTACAGGAAGATGATTGCTGGAAGTTGTTTGCTAAACATGCATTCCGAGATGATGATACTCAACCAAAAGATGATTGCCGGAAGTTGTTTGCTAAACATGCATTCCGAGATTATGATACTCAACCAAATCCAGAGTGCAAGGAAATTGGCATGAAAATTGTTAAAAAATCTAAAGGACTACCTCTTTCCTTGAAAACAATGGGAAGTCTATTATATAAAAAATCATCTATTTCAGAATGA