Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_14040	LG3	42478264	42481809	PREDICTED: putative disease resistance RPP13-like protein 1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/G	42478365	synonymous_variant	p.Lys34Lys
G/A	42478381	missense_variant	p.Gly40Ser
C/T	42478406	missense_variant	p.Ala48Val
T/C	42478416	synonymous_variant	p.Val51Val
C/T	42478423	missense_variant	p.Leu54Phe
A/T	42478434	missense_variant	p.Glu57Asp
A/T,C	42478448	missense_variant	p.Lys62Thr
C/T	42478454	missense_variant	p.Pro64Leu
A/G	42478455	synonymous_variant	p.Pro64Pro
G/C	42478457	missense_variant	p.Arg65Pro
C/T	42478458	synonymous_variant	p.Arg65Arg
G/A	42478465	missense_variant	p.Asp68Asn
C/T	42478467	synonymous_variant	p.Asp68Asp
T/G	42478473	synonymous_variant	p.Leu70Leu
A/G	42478479	synonymous_variant	p.Arg72Arg
T/C	42478488	synonymous_variant	p.Asp75Asp
G/C	42478494	synonymous_variant	p.Val77Val
T/A	42478495	missense_variant	p.Phe78Ile
A/G	42478503	synonymous_variant	p.Ala80Ala
A/G	42478506	synonymous_variant	p.Glu81Glu
C/A	42478510	missense_variant	p.Leu83Ile
A/G	42478524	missense_variant	p.Ile87Met
G/T	42478548	missense_variant	p.Gln95His
G/C	42478568	missense_variant	p.Ser102Thr
C/T	42478571	missense_variant	p.Ala103Val
C/A	42478578	missense_variant	p.Asn105Lys
C/G	42478596	synonymous_variant	p.Leu111Leu
A/G	42478708	missense_variant	p.Ser149Gly
G/A	42478727	missense_variant	p.Gly155Glu
T/C	42478797	synonymous_variant	p.Asp178Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_14040.1

MASEMVIGVLVSTFVQRTIDTLAARLVHIFRQRKHKKQLGNLKMKLLAIDVVALDAEQKQFKDPRVRDWLLRAKDVVFDAEDLLDEIDYELSKSQAEAESQSATNKVWNSLNSSFVSFFEIEIESKMEQVIEDLEDLANESYILGLEKSAGVGVGSRSGSKLTYTSLPNESVIYGRDDDKESIFNWLTSELTSDTDINLSILSIVGMGGLGKTSLAQHVFNDPRLEGKFNIKAWVSVPQEFDVLNVSKAILEGVSASPVDSTNLEGVHKKLKEKLTGKKFLLVLDDNWNENKSKWEQVQKALEFGAPGSRLLVTTRSEKVVVTMRSEKHLLQVLRKDYCWDLFEKHAFQSANSQLDPDFMEIGKKIVEKCNGLPLALKTMGSLLYNKPSLREWESIMKSEMWDFSENESDILPALRLSYLHLPPHLKKCFAFCGLFPKGHRFDRDLLIQLWMAENFLESSSSPKEVGEQYFNDLLSRSFFQQSNEEEENAFIMHDLLLDLAKYLCQDSCIRLGVDEPQGVHKRTRHFSFATDQIRTFDGFGNFIDSRKLHTFVQTSWTGYPRVMLYWRCKISLDDLFSKFKYIRVLSLNVFRILTEVPKSIGNLKHLRSLDLSYTEIEELPDSIGLLYKLQILKLNHCKSLTELPSCLLQLDKLCFLELLNTEVKNVHILGELKNLQVLMNSFCVDIHEELSIQQLGQINLHGSLSISGLQSIEDPSHASEAYLKNKPHIVELEFNWNWSCSSSVDSSDSSSDDSTKDEDVIENLQPSKHLKKLSIRSYMGEHFPNWLFDNSLPNLVSLVLKECEYCKRLPPLGLLPSLKDLRIEKLHGIVSIDADFYGNNSSSFKSLEKLYFFDMKEWEKWECKVVTGAFPRLQKLSIKGCPKLKGQLPELLVPLEKLCIRYCQKLEAFAPRALDIKLEESAKVLLDWATVKSLLLAGDIMEASFLDMVRDNIPDNSIQHLKIYGSSFRPSPNIGLWTFPLHFFPTLKTLVLWRLKSLQMISQNHALECLDIGWCPKIESLPENKDMLKSLYISDCPRLEPFTEGGLPSNLKEMTLSNCPRLVGSLKGTFGDNPSLKTLHIEHLDAECFPDEGLLPLSLTELGIRNFPNLQELDYTVLNQLSSLKSLTLWNCPKLQRLPEEGLPKSISDLCIYLCLSLEDRIREGGEDWEKVAHIPRLRI*

CDS Sequence:
>Vu_14040.1

ATGGCATCAGAAATGGTTATCGGTGTTCTTGTTTCTACTTTCGTCCAGAGAACTATCGACACTTTGGCTGCCCGTCTTGTCCACATATTTCGTCAAAGAAAACACAAGAAGCAACTCGGCAACTTGAAGATGAAGCTCCTTGCCATTGATGTTGTGGCTCTTGATGCAGAACAAAAGCAGTTCAAAGATCCACGCGTCAGAGACTGGCTTCTCAGAGCCAAAGATGTTGTGTTTGATGCAGAAGATCTCTTGGATGAGATAGATTATGAACTCTCCAAAAGCCAGGCGGAAGCTGAGTCTCAGAGTGCTACTAACAAGGTGTGGAATTCCCTCAATTCTTCTTTTGTCAGTTTCTTTGAAATAGAAATTGAATCCAAGATGGAACAAGTCATTGAGGACCTAGAAGATCTTGCAAATGAAAGCTATATTCTAGGTTTGGAAAAGAGTGCTGGTGTTGGAGTTGGATCAAGATCGGGTAGTAAATTAACATATACATCTTTGCCAAATGAAAGTGTTATCTATGGCAGAGATGATGACAAAGAATCTATCTTTAACTGGCTCACTTCTGAACTTACATCCGACACTGACATCAACCTATCTATACTTTCTATTGTGGGTATGGGTGGATTGGGTAAAACCTCACTTGCCCAACATGTATTCAATGACCCAAGGCTTGAAGGCAAATTTAATATCAAAGCTTGGGTAAGTGTCCCACAGGAATTTGATGTTCTCAATGTATCAAAAGCAATTCTTGAGGGTGTTTCAGCATCACCTGTTGATAGTACAAATCTTGAGGGAGTTCACAAAAAATTGAAAGAAAAATTGACGGGGAAGAAATTTCTTCTTGTTTTGGATGACAATTGGAACGAAAACAAATCCAAATGGGAACAAGTGCAGAAAGCTCTTGAGTTTGGGGCCCCAGGAAGTAGGCTTCTTGTCACTACACGAAGCGAGAAAGTTGTTGTTACCATGCGATCAGAAAAGCATCTCCTGCAAGTACTAAGAAAAGATTATTGTTGGGACTTGTTCGAAAAACATGCATTCCAAAGTGCTAATTCTCAACTAGATCCAGATTTCATGGAGATTGGTAAGAAGATAGTTGAGAAATGTAATGGGCTTCCTTTAGCCTTGAAAACAATGGGAAGTCTATTATACAATAAGCCATCCCTTCGCGAATGGGAAAGCATTATGAAAAGTGAGATGTGGGATTTTTCAGAAAATGAAAGTGATATACTCCCTGCTTTAAGATTGAGTTATCTCCACCTTCCTCCTCATCTAAAGAAATGTTTTGCTTTTTGTGGCTTGTTTCCCAAAGGTCATAGGTTTGACAGGGACTTGTTAATTCAACTGTGGATGGCTGAAAATTTTCTGGAAAGCTCTTCGAGTCCTAAAGAAGTTGGTGAACAGTATTTCAACGACCTATTATCACGGTCTTTCTTTCAACAATCAAACGAGGAAGAGGAAAATGCTTTTATCATGCATGACCTTCTTCTTGATTTAGCAAAATACCTTTGTCAAGACAGTTGCATCAGGTTAGGAGTCGATGAACCACAAGGAGTACACAAAAGAACTCGTCATTTTTCATTTGCAACCGATCAAATTCGAACTTTTGATGGGTTTGGAAATTTCATTGACTCTCGAAAGTTGCATACATTTGTTCAAACAAGTTGGACCGGGTATCCTCGTGTTATGCTCTATTGGCGTTGCAAGATATCGTTAGATGACTTGTTTTCAAAATTCAAGTACATACGCGTCTTATCACTGAATGTCTTTCGTATCCTTACAGAGGTGCCTAAATCTATTGGAAATCTTAAGCATCTTCGTTCGTTAGATCTCTCTTATACTGAAATAGAAGAACTACCCGACTCTATAGGTTTACTCTACAAGTTGCAAATACTGAAGCTAAACCATTGTAAAAGTTTAACGGAGCTTCCCTCATGTTTGCTTCAACTCGACAAATTGTGTTTCCTAGAACTATTAAATACTGAAGTGAAGAATGTGCATATTTTGGGAGAGCTGAAGAATCTCCAAGTATTGATGAATTCGTTTTGTGTTGACATACATGAGGAACTCAGTATTCAACAATTGGGACAAATCAATCTTCACGGAAGTTTATCCATTAGTGGGCTGCAAAGTATTGAGGATCCCTCTCATGCATCAGAAGCATACCTGAAGAACAAACCACACATTGTGGAGTTAGAGTTCAATTGGAATTGGAGTTGCAGCTCCTCTGTTGATTCAAGTGACAGTTCCTCTGATGATTCAACAAAAGATGAGGATGTAATTGAGAATCTACAACCCTCAAAACACTTGAAGAAGTTGTCAATAAGGAGCTACATGGGTGAACATTTTCCAAATTGGTTATTTGATAATTCATTACCAAATCTGGTGTCCTTAGTGTTGAAGGAATGTGAATATTGCAAACGTTTACCTCCCCTTGGACTTTTGCCATCTCTTAAGGACTTGAGAATTGAAAAACTTCATGGGATAGTGAGCATTGATGCTGATTTTTATGGGAACAATTCTTCTTCCTTTAAATCCCTTGAGAAATTATATTTCTTCGATATGAAAGAATGGGAGAAATGGGAATGTAAAGTTGTGACAGGTGCTTTTCCACGTCTACAAAAGTTATCCATAAAGGGTTGTCCCAAGCTGAAAGGACAGCTGCCAGAGCTACTTGTTCCTTTGGAAAAACTATGCATTAGATACTGCCAAAAACTTGAGGCTTTCGCTCCCAGGGCTCTAGATATAAAACTGGAAGAAAGTGCAAAGGTGTTGCTTGATTGGGCTACAGTGAAAAGCCTCCTATTGGCTGGGGACATCATGGAAGCATCATTCTTGGATATGGTTCGGGATAACATACCCGACAATTCTATTCAACATTTGAAGATTTATGGATCCAGTTTTAGGCCTTCTCCAAATATTGGTCTGTGGACCTTTCCACTACATTTCTTCCCGACACTAAAGACGCTTGTTCTCTGGCGGTTAAAAAGTTTACAGATGATTTCTCAAAATCACGCACTGGAGTGTCTGGATATCGGTTGGTGCCCTAAAATTGAATCATTGCCTGAAAACAAGGATATGCTCAAGAGTTTATACATTAGTGATTGTCCAAGACTTGAGCCTTTCACTGAGGGAGGTTTGCCATCAAATCTAAAAGAGATGACACTCAGTAATTGCCCTAGACTTGTTGGCTCACTGAAAGGAACTTTCGGAGACAATCCGTCTTTGAAAACGTTACATATTGAACATCTGGATGCCGAATGTTTTCCTGACGAAGGTTTGCTTCCACTCTCTCTTACTGAACTAGGCATCCGTAATTTTCCAAATCTACAAGAACTGGACTACACGGTTCTCAATCAACTCTCATCTCTTAAAAGTCTAACCCTTTGGAACTGCCCCAAGCTTCAACGCTTACCAGAGGAGGGTCTTCCTAAATCAATTTCAGATCTTTGTATATATTTATGTTTATCGTTGGAAGACCGTATCAGGGAAGGAGGTGAAGACTGGGAAAAGGTTGCTCACATTCCGAGACTAAGGATCTAG

Promoter Sequence:
>Vu_14040::LG3:42476264-42478264(+)

CTTTATAACCGAGGTTATAGAGGTTTTATGCCTCGGTTTCCCTTGAACCGAGACGTATAAGTTCGCTATAACTACAAAAATGCTACCGCGTTTTGATAGGCTTTGGTTTTGTGTAAACCGAAGCCTATTATACAAATTTAAAAACGAATTTTGTACTAGTGAAAACAAAAACCGAAAATCGATTTGGTATAAAGAGGTTTTTTTTCTCATCCCTAATGTCAACATATTTTCATTTGGAGACCATGGCACCAACATTCTTCATATTTTTGGAAAAATAGTGTGAAATTATAGGTACTTTGGAGCACTTCACATGATGTTCACACTGTAGTAGTTGACACAAATTCCGACATGTAAACAGATTTTTCTACTTTAAGAAGAGATATATAAGAAGAAAAAATAAAATAAATTAATTTTTACTATAAATATAATATAGTATTAGTATAAGTTAAAAATAAGAACTTAAAGATGTAATATAAAAAAATTACAATTTAATTAATACATAAACTAAATTTAACTTGAAATTTTTTTTCTCTTTTTTTAAGAGTGCTGATAGTTGCAGTTATTGAAGGATGAACAACCATTGAAGAAACAATTGTTAAAATCATGCATTGGGAAAGTACTTAGAAATTAGTAATACATGAGTTTTGTAGTTCAGTTTGTGAATGACAGCTGTGGAACACAACACTTATTGGTTGTTGACGGCGAACCATCAAGGAAAAAACGATCACCAAAGAAAAACTAAAGGTCATAATTCAAAAAGTTAGCTTATAACTATTATTTCCATTGCACTGTAACGAATCAAAGACGTTAGCTTCACTTCAAATTACTCAGTTTCATTCATCCACTCACGGAAAATAAAATGAACTGTAAAATCATGGCTGTAGTGATGATTTATTTTTATTATTTTCTTCTAAAGTGCTTACAGATAGTTATGTCTAAATAAATTCCATAGCTTCAATTATTCGATAACATAAACTACTCAGGAAACAATTGTCAAAATTCGGCAGGCTTGGAAAAGTACTTTTTTTTTTCTTCTAGAAATTAACAATAAATGAAGTTAACATTTGCTGAATTATAGAATGTATTTAAGTAGTTTACGTTTGCTTGATGAAAAAAGTCACACAATGCATCCAACTTTAATAAAAATAAGGAAAAAAAAACAGAGGCGTTAAACTTTTTCGTCTCATTTTTAATTTATTATTATTATTCTTACTGTTTCATATATAACTTTTTCTTCTCTTTCTTTTATTTTTTCAATCTGATCATCCCTTGTCTTTACATATATCATTGGCTTGTTATTTTTCATTTAATTTACAACTATTATCTCTATTATATCTTTTATAACTCACTTCTTAGCATTCTTTTTAGGGTTAAATATGTTTTTAGTCCCTAAACTATTGGTCGTTTCTGGTTTTCGTCCCTATTTCAAAGTAAGGTACAATTTGATCCTCATTCTTTTCGAAACGTTCGTTTTAGTCCTCGAAAACTAAACACTGTTTAAAAATTTGGTCCTCATTTAGCAACAAATGAGGACTAAAAAGAATGTGGACCAAATTGTATCTTACTTTGAAAGAGGGACGAAAACCAGAAACGGTCAATAGTTTAGGGACTAAAAACATATTTAACTCTTCTTTTTATTATTATATCAATATTCTTTGTATTATCAATTATTCTCTTCTTTCTACCCAATTCACCCGCAAGACGTGGAGGATGGTACGTAATAATTGACAAGTGTAGGCAAATATAAGAAAATTTGAACATTGACTATATCAAAACCACTCGTTCCTTCAAGCTAGTTGAGTACAGTTTATCAATAACAGAGAGCTATCGGAAGACTCAAGTTGACGAGGAACCATCAAGGAAAATATGTTCACCTCAAGGCCATCATTCAAAAAATAGCTTATTACTTTTATTTCCATTGCACTGTACCCAATCAAAGGCATAAGCTTCACTCGAAAATACTCACTTTCATTCATCCACTTCCTTTTCTGTTCTTACCA

Gene Sequence:

>Vu_14040(+)