Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_14001 LG3 41771939 41775465 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/A 41771940 start_lost p.Met1?
A/T 41771943 missense_variant p.Tyr2Phe
C/G 41771949 missense_variant p.Ala4Gly
A/G 41771963 upstream_gene_variant
T/C 41771964 upstream_gene_variant
G/A 41771967 upstream_gene_variant
G/T 41772000 upstream_gene_variant
G/A 41772012 upstream_gene_variant
G/A 41772025 upstream_gene_variant
A/G 41772029 upstream_gene_variant
C/A 41772073 upstream_gene_variant
C/A 41772074 upstream_gene_variant
A/G 41772127 upstream_gene_variant
A/T 41772139 upstream_gene_variant
C/T 41772147 upstream_gene_variant
A/C 41772155 upstream_gene_variant
T/A 41772177 upstream_gene_variant
T/C 41772217 upstream_gene_variant
T/C 41772219 upstream_gene_variant
T/G 41772245 upstream_gene_variant
G/C 41772288 upstream_gene_variant
C/A 41772341 upstream_gene_variant
T/C 41772357 upstream_gene_variant
C/T 41772366 upstream_gene_variant
G/T 41772458 upstream_gene_variant
T/C 41772509 upstream_gene_variant
A/G 41772551 missense_variant&splice_region_variant p.Gln6Arg
A/G 41772582 stop_lost p.Ter16Trpext*?
G/C 41772617 missense_variant p.Ser28Thr
A/G 41772756 stop_lost p.Ter74Trpext*?
G/T 41772763 missense_variant p.Asp77Tyr
G/C 41772770 missense_variant p.Cys79Ser
T/C 41772816 synonymous_variant p.His94His
G/T 41772827 missense_variant p.Ser98Ile
C/A 41772888 synonymous_variant p.Thr118Thr
A/T 41772889 stop_gained p.Arg119*
A/C 41772903 stop_lost p.Ter123Cysext*?
T/A 41773101 stop_gained p.Tyr189*
G/T 41773208 missense_variant p.Arg225Leu
G/C 41773255 missense_variant p.Ala241Pro
A/G 41773324 missense_variant p.Arg264Gly
T/C 41773528 missense_variant p.Tyr332His
A/T 41773533 missense_variant p.Lys333Asn
C/T 41773551 synonymous_variant p.His339His
T/C 41773645 missense_variant p.Cys371Arg
T/A 41773776 upstream_gene_variant
A/G 41773786 upstream_gene_variant
A/T,* 41773793 upstream_gene_variant
A/T 41773994 upstream_gene_variant
C/T 41774014 intron_variant
T/C 41774243 intron_variant
G/T 41774345 upstream_gene_variant
T/A 41774369 upstream_gene_variant
A/C 41774435 upstream_gene_variant
T/C 41774485 upstream_gene_variant
A/G 41774521 upstream_gene_variant
G/A 41774619 missense_variant p.Glu447Lys
C/T 41774676 missense_variant p.Pro466Ser
G/A 41774692 missense_variant p.Arg471Lys
A/G 41774693 synonymous_variant p.Arg471Arg
C/G 41774900 upstream_gene_variant
A/T 41774912 upstream_gene_variant
T/C 41774987 missense_variant p.Met543Thr
G/T 41775020 missense_variant p.Arg554Ile
C/T 41775041 missense_variant p.Thr561Ile
T/A 41775113 upstream_gene_variant
T/A 41775120 upstream_gene_variant
C/T 41775124 upstream_gene_variant
C/T 41775130 upstream_gene_variant
G/A 41775413 missense_variant p.Arg657His

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_14001.1
MYLACHSLAVSESIQDDNTLVSANGITEVGFFSPGNSTRRYLGIWYKNVSPFTVVWVANRNTPLQNKSGVLKLNEKGILVLLNATNHTIWSSSNISSKAGNNPIAQLLDSGNFVVKKGPEANDDGVLWQSFDHPSDTFMPGMKIGWNLETDLETFLSSWKSFDDPAVGEYALKMNLSGYPQMMKFKGPDIVFRGGSWNGLSLVGNPGPTYGTSPRFVLNEKEAYYEYGIEESSGFIIYTLTPSGTGEILFWTTQARTQQVLSSGEQDQCENYAFCGANSICNYDGNHPSCECLRGYVPKSPDQWNISIWLSGCVPRNKSNCTNSYTDGFWKYTNMKLPDTSSSWFDETISLDECQQSCLMNCSCTGYSSLNVLDGGSGCLLWFDDLVDMRNFSKWGQDFYIRVPASELDHGNDKKNIVGIIVGVTIFGLIMTCVCILGIKNPDEGKRKFLDWRKRFNIISGIARGLLYLHQDSTLRIIHRDLKPSNVLLDANLDPKISDFGLARLVLGDQVEAKTNRVAGTYGYIPPEYAVRGHFSVKSDVFSYGVIVLEVLCGKKNREFSDPEHCNNLLGHAWKLWSEDRALELVLDEVLEEECTVFEVIRCIQVGLLCVQQRPEDRPDMSSVVLMLNGDKLLPNPKAPAFYTEIDDVSKANSPSANRKPFSDNELSITVLNPR*


CDS Sequence:
>Vu_14001.1
ATGTATTTGGCTTGCCATAGTTTAGCAGTAAGTGAATCAATCCAAGATGATAACACTTTGGTTTCTGCAAATGGAATCACTGAAGTGGGTTTCTTTAGCCCAGGAAATTCAACAAGACGATACTTGGGTATATGGTACAAAAATGTATCCCCTTTCACAGTGGTGTGGGTGGCAAACCGAAACACGCCTCTTCAGAATAAATCAGGAGTTCTCAAACTCAATGAAAAAGGGATTCTTGTTCTTCTCAATGCTACAAACCACACCATTTGGTCATCATCCAACATCTCAAGCAAAGCAGGGAATAATCCAATTGCTCAGCTCTTGGATTCGGGAAATTTTGTAGTTAAAAAGGGACCAGAAGCCAACGATGATGGCGTCTTGTGGCAGAGTTTTGATCATCCAAGTGATACATTTATGCCAGGAATGAAAATTGGATGGAACTTAGAGACTGATTTGGAAACGTTTTTATCTTCTTGGAAAAGCTTTGATGATCCTGCTGTTGGAGAATATGCTCTGAAAATGAATCTTAGTGGATATCCTCAAATGATGAAGTTCAAGGGACCTGATATAGTGTTTAGAGGAGGATCATGGAATGGTTTGTCTCTAGTGGGAAATCCAGGTCCGACCTACGGCACGTCACCAAGATTCGTGCTCAATGAAAAAGAAGCGTATTACGAATACGGGATTGAGGAGAGTTCGGGGTTTATCATATATACATTGACGCCTTCAGGCACAGGAGAAATATTGTTTTGGACAACTCAAGCAAGAACACAGCAAGTTCTATCAAGTGGAGAGCAAGATCAATGCGAGAATTATGCCTTTTGTGGTGCAAATTCTATATGCAATTATGATGGTAACCACCCAAGTTGCGAATGCCTGAGAGGTTATGTTCCCAAGTCTCCAGATCAGTGGAATATATCAATTTGGCTCAGTGGTTGTGTTCCAAGGAATAAATCTAATTGCACAAATAGTTACACAGATGGCTTCTGGAAGTATACAAACATGAAATTGCCAGACACTTCTTCATCATGGTTTGATGAGACTATTAGTCTTGATGAATGTCAGCAGTCATGCCTTATGAACTGTTCTTGTACAGGTTATTCAAGTCTAAATGTTCTTGATGGAGGTAGTGGCTGTCTACTTTGGTTCGATGATCTAGTTGACATGAGGAATTTCTCAAAATGGGGACAAGACTTCTATATCAGAGTCCCTGCTTCAGAATTAGATCACGGAAACGACAAGAAAAACATTGTAGGAATCATTGTTGGTGTGACTATTTTTGGATTAATCATGACATGTGTATGCATACTGGGAATTAAAAATCCAGATGAAGGTAAAAGGAAGTTCTTAGATTGGCGTAAGCGTTTCAACATCATTAGTGGCATTGCTCGAGGACTCCTTTATCTTCACCAAGACTCTACATTGAGGATTATTCATAGAGATCTAAAACCTAGTAATGTTTTACTAGATGCGAATTTGGATCCCAAAATATCAGACTTTGGCTTGGCTCGATTGGTTTTGGGAGATCAAGTTGAGGCAAAAACTAATAGGGTGGCAGGAACATATGGCTACATACCTCCTGAATATGCTGTGCGTGGGCATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTCATTGTACTAGAGGTTCTATGTGGTAAGAAAAACAGAGAATTTTCGGACCCAGAACACTGCAACAATCTTCTTGGGCATGCATGGAAATTATGGAGCGAAGACAGGGCACTGGAACTAGTACTAGATGAAGTGTTAGAAGAAGAGTGCACGGTGTTTGAAGTTATAAGATGCATACAAGTAGGTCTATTATGTGTACAACAAAGACCAGAGGATAGGCCAGACATGTCATCTGTGGTTTTAATGTTAAATGGCGATAAATTATTGCCAAACCCAAAGGCTCCTGCATTTTACACTGAAATTGATGATGTTAGCAAAGCAAATTCTCCATCAGCAAATCGCAAACCGTTCTCAGATAATGAACTTTCCATCACAGTGTTAAACCCAAGATAG


Promoter Sequence:
>Vu_14001::LG3:41769939-41771939(+)
AATCGGCAGAAAGAAAGAAAAGGATGAAGGCAATCGGAGGGCTGAAGACTTAGCTGGAGAGCGAGATGAATAGAGACTGTTGGATCGTGAAGATGAAGCGTCGAAGGTTCTCCGTTGCTCTTTCCCTTTTTCTTTTTCTTTGATTGGGACCCTATAAAAAGCTGATGTAAATAGTTTATCGGGGCATGAGTACTGTATAGTATGAGTAGGAGATATACATGGGTGTGTGTACAAAGTAATAGACAGAAGATCGTGTGCGAGAGAGTAGTGTAGATTTTAATTCGCTTTCGAATTGCTTCTGGATTTCACTAGTGGTGTTCATGGAAACGTGACCGTTTGTGAGTTTCTCATTTGGTGAATTTCAGTATCTTCCATTTGTAATTCTTGCTTCAAATGTAATGGAACTTTAATCTTTGTATGATTCTCTTTGTTTTAATTACGATTCTTATGCATCACCAATAGTGTGGTCAGGATTGATTCACTTGCGCTCCCTTTGTATTGCTCTGAGTTGCGCAAAGGCACCACCAGGCTAACCAGGTTGTTCTCAAGTTCAGTTGGGCTACTTGGTCTCCACACAGAAACATACTGGCTCTCCAATGGGTTTTCATCCGACCATCAACAAAATTCCTATCTCTTGCTCTGCATTTTCAGGAAGGAGATTTGTCTTCCCCCATTGTCTTAGCCTTGTATTACTTTGCAATGTGTCTGACCTTACCACAATTATAACATTTTATGGATCTGCCCTAGTTTGCATAAACTAGTCATGTTTACCACACTTAAACACTCCACTTCTGGCCCACCTCCTCAAACTTTCCCTTGTCTTTTAGTCATGCTAATTTTGTTGACCTGGTTGTTTTTCACTATCATCTCCAAAATCATCTCTACCACGTCCTCTAGTACATCATCCCTTACTGTTCCAAGTATCTTCCTTCACTTTATGTTGTGCTTGATCAAGTGGTTGAAAGTTCTTCCTTTTCAACTGTTCGTGGGCTTCAAGTGAACCAAGAAGCTCTTTCAATGAGAGAACTGACAATTCCTTTTACTCCTCGATGGCGCACACAATGTTTTAGAAATCATCCGTCAATGATCTCAAAATCTTCTCCACGACCCATCTGGCAGGCATTGGTTCTCCATTCCTACTTAGTTGATTTGCCACTTTTTTCCACCCGGTACTCAGTCACATGTTCTCTGTCTTTCATCTTCAAATTTTCAAACTCCTTACAAAGAGTTTGAAGTCGGACTTGCCTAATATGATTGTCTCCTCTGTACACAACCTCCAGAATCTCTCATGCTTTCTTTAAGGATGTTGCTTTTGCTAGTCAAAGCTGGATTCGTCTACTGCATTGTACAAAATGTACTAAGCTGATATATATCTTTTACTCCTGTCTTTTTCAACACGGTAATCTGTGTTATCGTCTCATTTACGTCCTCTGCTGGTTCTTGGTACCCACTCTCCACTATATCACATACATCTTGGGATCCCAAAAGAATGTTAATTTGTAAACACCAATTATCATAATTGATCTTCTTCAACAATTGTGGCACAAGAATATGTTAACATTTTTTACCATCTCTCTCACTTTTTTTACGCACTCTCACTTTTTTTGAAGCACTCAGTCTTTCATTCTTTTTTTTTCTCTCACTCGGCACTTAGAGTAGAAAACTCTGGTACCACTTTTTTATCTAATGCATTCTGATCAATATCATATAATGTTTTATATTAATTTTCTATGTTTTTATTGATTTCAACATTGAAGAATTTTCTCCAAGTGAATATTTCTCTAACTTAATTATCTTGTCTCTTCATGCCATATCAGTAGATCCACACTCTTCTTTAGTAAGAACAAAACTATATGCCAAAATTTATATATAACTCGAACCACAATGACGGCAATCTCATGTAAATTCAACGAATGTAGTCTTACGCAATAGTGTGTAGCGTGTTTGTTAAACAACGGTCTTTTTAAATTCAATGCGAGACCAAAGACAAGAAATTAGCA


Gene Sequence:
>Vu_14001(+)
ATGTATTTGGCTTGCCGTTAGTAAATGTGATGCTGAAAACGGAACGTTCCTGGATGGCATCGTCGTTGAACCCGACGTTTTCATAAGCACACCATTATACTTCTCATGTGAACAGAAAATAAATGAAGTCAAAGCCATGATTAAAAAAATTAGGAACCACGAAAAGAAGTGAGGAAAATTTCGGCTAAATATTATATAAAAATCGTATCGAGAAATACAAAAAGCTTTAGATGGTAAATAATGGAAAAATATTTCACCTCAGATCGTGTTTATTGGATTATTATATAATTAATAACTTCTTTTTTTTTTTTTTTCAATTTCCATCGGTGCATTCTTAATTTCAACGGGTGCAATTTTTTTAATGGAATTACTTGACATTGAATATTATCATTCTTGTCAAACCATCTAACTTCTACTTTAGTTTTTTCTACAAAGATGCGACGTTGTCATGGTCAATCCTTATGCCAATTTATAACTACCCTCATGGTAGTTCTTCCTCCTCAATTTTTGTACAAGTGGGAGAGGCAGAAAGAAAAAAAAAATTAAGTCACAATGTTATTTGTTTGTTTGTTATTATTATCTTGCTTGTCTAGAATTTCCAATTCACTAGATAGTTTAGCAGTAAGTGAATCAATCCAAGATGATAACACTTTGGTTTCTGCAAATGGAATCACTGAAGTGGGTTTCTTTAGCCCAGGAAATTCAACAAGACGATACTTGGGTATATGGTACAAAAATGTATCCCCTTTCACAGTGGTGTGGGTGGCAAACCGAAACACGCCTCTTCAGAATAAATCAGGAGTTCTCAAACTCAATGAAAAAGGGATTCTTGTTCTTCTCAATGCTACAAACCACACCATTTGGTCATCATCCAACATCTCAAGCAAAGCAGGGAATAATCCAATTGCTCAGCTCTTGGATTCGGGAAATTTTGTAGTTAAAAAGGGACCAGAAGCCAACGATGATGGCGTCTTGTGGCAGAGTTTTGATCATCCAAGTGATACATTTATGCCAGGAATGAAAATTGGATGGAACTTAGAGACTGATTTGGAAACGTTTTTATCTTCTTGGAAAAGCTTTGATGATCCTGCTGTTGGAGAATATGCTCTGAAAATGAATCTTAGTGGATATCCTCAAATGATGAAGTTCAAGGGACCTGATATAGTGTTTAGAGGAGGATCATGGAATGGTTTGTCTCTAGTGGGAAATCCAGGTCCGACCTACGGCACGTCACCAAGATTCGTGCTCAATGAAAAAGAAGCGTATTACGAATACGGGATTGAGGAGAGTTCGGGGTTTATCATATATACATTGACGCCTTCAGGCACAGGAGAAATATTGTTTTGGACAACTCAAGCAAGAACACAGCAAGTTCTATCAAGTGGAGAGCAAGATCAATGCGAGAATTATGCCTTTTGTGGTGCAAATTCTATATGCAATTATGATGGTAACCACCCAAGTTGCGAATGCCTGAGAGGTTATGTTCCCAAGTCTCCAGATCAGTGGAATATATCAATTTGGCTCAGTGGTTGTGTTCCAAGGAATAAATCTAATTGCACAAATAGTTACACAGATGGCTTCTGGAAGTATACAAACATGAAATTGCCAGACACTTCTTCATCATGGTTTGATGAGACTATTAGTCTTGATGAATGTCAGCAGTCATGCCTTATGAACTGTTCTTGTACAGGTTATTCAAGTCTAAATGTTCTTGATGGAGGTAGTGGCTGTCTACTTTGGTTCGATGATCTAGTTGACATGAGGAATTTCTCAAAATGGGGACAAGACTTCTATATCAGAGTCCCTGCTTCAGAATTAGGTGCTCAACTATTGTTTTTTGTGTTGCAATTGTTTATTTTTTTAACTTATAAACAAACTACGCTCTGTTTATTTCAGATCACGGAAACGACAAGAAAAACATTGTAGGAATCATTGTTGGTGTGACTATTTTTGGATTAATCATGACATGTGTATGCATACTGGGAATTAAAAATCCAGGTAAGTAAGTATATAGATATAATTTAGCTTCTATTACAGACTATTAGGCCCGAAAAAAATATGTGCATATTTTATGGCCATGTTTACGTACTGTTATTCTCTAACTCATCAGAGGCTGCAAGAAAATTTTGCAACAAGCATTACAAAAATATGCAGAGGAGGGAAGTGATAGATTTGCCAACTTTCGATTTCTCAGTCTTAGCCAGTGCCACTGGAAACTTTTCAACCGAAAACAAGCTTGGAGAAGGGGGTTTTGGACCAGTATACAAGGTGATGGTGAAAACTAAGGTGCAGAACAATATTTTCTTCAAACACTTTCTAACTATAGAAGAAGAATATTTTTCAGGGCACACTGATGGATGGGAAAGAGTTAGCTGTGAAAAGGCTTTCTCAGAAATCTTTGCAAGGGTTGGATGAGTTCAAAAATGAAGTTGCATTGATGGCCAACCTTCAGCATCGTAATCTGGTAAAGCTTCTTGGTTGCTGCATTGAAGGAGAAGAAAAAATGCTAATATACGAGTACATGCCGAACCACAGCTTGGACTACGTTGTTTTTGGTTGGAACCTTTATGATTTATTATTCTAAGTTACAATTATTCTATTTCTTATTTATAGCTCAGGTAATTATGTAGACTTGAACTGCCATGTGAAATGTGTGTATTTGACTAGATGAAGGTAAAAGGAAGTTCTTAGATTGGCGTAAGCGTTTCAACATCATTAGTGGCATTGCTCGAGGACTCCTTTATCTTCACCAAGACTCTACATTGAGGATTATTCATAGAGATCTAAAACCTAGTAATGTTTTACTAGATGCGAATTTGGATCCCAAAATATCAGACTTTGGCTTGGCTCGATTGGTTTTGGGAGATCAAGTTGAGGCAAAAACTAATAGGGTGGCAGGAACATAGTGAGTTACTTTCTATATATTATGATTGTCTGATTTCTCCTGTCAAGTTTTAACTACTTCAAAAATTAATTTTTCAGTGGCTACATACCTCCTGAATATGCTGTGCGTGGGCATTTCTCAGTGAAATCAGATGTCTTTAGTTATGGTGTCATTGTACTAGAGGTTCTATGTGGTAAGAAAAACAGAGAATTTTCGGACCCAGAACACTGCAACAATCTTCTTGGGCATGTAAGCATACTGATTTGACTATATTGGTAATTAGTATAAAGTGAATTATTTACTGATACGAATTAAATTCTTACCATCTTAGGCATGGAAATTATGGAGCGAAGACAGGGCACTGGAACTAGTACTAGATGAAGTGTTAGAAGAAGAGTGCACGGTGTTTGAAGTTATAAGATGCATACAAGTAGGTCTATTATGTGTACAACAAAGACCAGAGGATAGGCCAGACATGTCATCTGTGGTTTTAATGTTAAATGGCGATAAATTATTGCCAAACCCAAAGGCTCCTGCATTTTACACTGAAATTGATGATGTTAGCAAAGCAAATTCTCCATCAGCAAATCGCAAACCGTTCTCAGATAATGAACTTTCCATCACAGTGTTAAACCCAAGATAG