Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_13974	LG3	41306598	41309540	PREDICTED: disease resistance protein RGA2-like	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/C	41306778	missense_variant	p.Glu61Gln
C/G	41306855	synonymous_variant	p.Ala86Ala
G/A	41306913	missense_variant	p.Asp106Asn
C/T	41307173	synonymous_variant	p.Phe192Phe
T/G	41307188	missense_variant	p.Ile197Met
G/C	41307194	synonymous_variant	p.Pro199Pro
C/T	41307219	missense_variant	p.Arg208Trp
G/T	41307255	missense_variant	p.Val220Phe
A/C	41307467	missense_variant	p.Arg290Ser
T/C	41307547	missense_variant	p.Val317Ala
A/C	41307804	missense_variant	p.Lys403Gln
A/G	41307922	missense_variant	p.Tyr442Cys
A/T	41307961	missense_variant	p.Glu455Val
C/A,*	41307966	missense_variant	p.His457Asn
A/T	41307971	synonymous_variant	p.Ser458Ser
G/A	41308022	synonymous_variant	p.Arg475Arg
G/T	41308212	missense_variant	p.Gly539Cys
A/C	41308215	missense_variant	p.Lys540Gln
T/A	41308301	missense_variant	p.Asn568Lys
C/T	41308710	missense_variant	p.Pro705Ser
T/A	41309054	synonymous_variant	p.Ser819Ser
T/C	41309123	synonymous_variant	p.Val842Val
C/G	41309412	missense_variant	p.Arg939Gly
C/A	41309458	missense_variant	p.Thr954Lys
C/T	41309468	synonymous_variant	p.Asn957Asn
T/A	41309516	stop_gained	p.Tyr973*
A/T	41309517	stop_gained	p.Lys974*

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_13974.1

MIPALLVEKPWLCYNAFLVGNHMLSAHKTCSLLIFFPVASYNPSSSVSILQSCNMAGAILEIVLENLNSLEVGLCLGFNLDMKRLASLLTTIKETLEDAEQKQLSDRAVKDWLEKLKDAAHVLDDILDEFAYESLRLEHQGVKCGPSNKVQRSCLSSIHPKNVAFRCKIAKKMKKITERLEEIAEGSTNFHFTKMEIFPWRNSAVTERHQTKPFITDSKVYGREGDTDKFIDFLTGYVSHSENASVYTIVGEGGLGKTTLAKLIFKHERIINHFELRIWVRVSEDFRLKRVIKAIIEVASRHPCEDMDIEPLQIRLVDLLQRKRYLLVLDDVWIDELESWSQLKYVLLSCGAKGSSILVTTRLPNTVAASIGTVPPHVLSRLSDNDCWEIFKEHAFGLNEVEKEVLVATGMEIVKKCRGVPLAVKIMGGMFSFKREQKEWLYVKESNLWSLPQHEKHSVIPILRLSYLDLPMKLRQCFAYCARFPKGETISKEDLIEQWMANGFIPSSETFDAEDTGDSMWNELYWRSFFQDIETDELGKVKTFQIHDPVHDLTQFLAEDVCCIAHDNDVTTLSDTIHHLADHRAAWDVSEESINSMQLHQVKSLRTYIGQLYPVVFKCYSLRVLWCTAVKELSNSICHLKHLRYLNLSQGNFKTLPESLGKLWNLHILKLDYCYRLKQLPNRLTRLKALQQLSLKDCYNLSSLPPHLGKLTSLKKLSAYLVGSERGFHLAELGSLHLKGYLHIKHLEKVKSVTDAKEANMSNKQLHKLYLSWDENEESELQQNVEEILEALQPDTQQLQNLTLQGYKGENFPLWLSSSSSLKDLAIVGCRKFILSSGFRCVEDLLVYRCKEVEHLHESLQRMSSLHSLRLWDLPNVESLSGCFANLPLLQSLSLLDLPKLKSLPDCFGRVPLLRSLTLRDLPNVESLPDCFGNFRLLREMVIGDCSKLACLPTSLNLKSLEKVEIYNCPSLYKRREEEN*

CDS Sequence:
>Vu_13974.1

ATGATCCCTGCCTTACTGGTTGAGAAACCTTGGCTTTGTTACAATGCTTTTTTGGTAGGCAACCACATGTTAAGTGCACACAAAACTTGTTCTTTGTTAATCTTCTTCCCAGTTGCTTCATACAACCCCTCCTCTTCTGTCTCCATCTTGCAGAGTTGCAATATGGCTGGGGCTATCCTTGAAATTGTGCTTGAGAATTTGAACTCACTCGAGGTTGGACTATGCTTGGGTTTCAATCTAGACATGAAAAGGCTTGCCAGTTTGCTCACTACAATCAAGGAAACTCTTGAGGATGCTGAGCAGAAACAGCTCTCTGATAGAGCCGTAAAAGATTGGCTGGAAAAGCTAAAAGATGCAGCTCACGTCCTGGATGACATCTTGGATGAGTTTGCCTATGAATCATTGAGATTGGAGCACCAGGGAGTCAAGTGTGGTCCATCAAACAAGGTACAAAGGTCTTGCTTATCCTCTATTCATCCCAAAAATGTTGCTTTTCGATGCAAAATTGCTAAGAAAATGAAAAAAATAACTGAGAGATTGGAAGAAATTGCTGAAGGAAGTACTAACTTTCACTTCACTAAGATGGAGATTTTTCCGTGGAGAAATAGTGCAGTAACTGAACGGCATCAAACAAAGCCATTCATCACTGACTCAAAAGTCTATGGAAGAGAAGGAGATACAGATAAATTCATAGACTTTTTGACTGGTTATGTTTCACATTCTGAGAATGCATCAGTCTATACTATTGTGGGTGAAGGTGGACTTGGAAAAACAACACTTGCCAAGCTTATCTTCAAGCATGAGAGGATAATCAACCACTTTGAGTTAAGAATTTGGGTCCGTGTTTCAGAAGATTTCAGATTGAAGAGAGTGATAAAGGCTATCATTGAAGTAGCATCTAGGCATCCCTGTGAGGATATGGATATAGAACCACTACAAATAAGACTTGTTGATCTGCTTCAAAGAAAAAGATATTTGCTTGTTTTGGATGATGTGTGGATTGATGAACTAGAGAGTTGGTCACAGCTGAAATATGTCTTATTGTCTTGTGGGGCAAAAGGTTCTTCCATCTTGGTAACTACACGCCTCCCAAACACAGTTGCCGCTAGCATAGGAACAGTGCCTCCTCATGTATTATCGAGGCTATCTGATAATGATTGTTGGGAAATTTTTAAAGAACATGCCTTTGGACTAAACGAGGTAGAAAAGGAAGTGCTTGTGGCAACAGGAATGGAGATAGTTAAGAAGTGTAGGGGAGTGCCTCTTGCAGTGAAAATAATGGGAGGCATGTTTAGTTTCAAAAGAGAGCAAAAAGAGTGGCTCTATGTTAAGGAAAGCAACCTGTGGAGTTTACCGCAACATGAAAAACACTCAGTAATACCTATCTTGAGATTAAGTTACCTAGACTTACCAATGAAACTCAGGCAATGTTTTGCATATTGTGCAAGATTTCCCAAAGGTGAAACGATAAGTAAGGAAGATTTAATTGAACAATGGATGGCTAATGGATTCATTCCATCCAGTGAAACGTTTGATGCTGAAGATACTGGTGATTCTATGTGGAATGAATTATATTGGAGATCATTTTTTCAAGATATTGAAACAGATGAACTTGGCAAAGTTAAAACTTTCCAGATCCATGATCCTGTCCACGATCTTACACAATTTCTTGCAGAAGATGTTTGTTGCATTGCACATGACAATGATGTAACTACCTTGTCTGACACAATACACCATCTGGCAGATCACAGGGCTGCGTGGGATGTATCCGAGGAATCCATTAATTCAATGCAGTTGCATCAGGTCAAATCTTTGAGAACCTACATTGGCCAACTTTATCCAGTTGTATTCAAATGCTACTCTTTGCGTGTGCTTTGGTGCACAGCAGTGAAAGAATTATCCAATTCAATTTGTCATTTAAAACATCTAAGATACTTAAACCTCTCACAGGGTAACTTCAAAACTCTTCCAGAATCATTAGGAAAACTGTGGAATTTGCATATACTGAAACTAGACTATTGCTATCGTCTCAAACAGTTGCCAAACAGATTAACACGATTAAAAGCTCTACAACAACTCTCTTTGAAGGATTGCTACAACCTATCAAGCTTGCCTCCTCATTTGGGGAAGTTAACTTCCCTAAAGAAATTAAGCGCTTATTTAGTTGGCAGTGAAAGAGGGTTCCATTTAGCAGAGCTAGGGTCACTACATCTCAAAGGATATCTTCACATAAAGCATCTTGAGAAGGTGAAAAGTGTGACAGATGCCAAAGAAGCCAACATGTCAAATAAGCAACTTCACAAGTTGTACTTGTCATGGGATGAAAACGAAGAATCCGAGTTACAACAAAATGTTGAGGAGATTCTTGAAGCCCTTCAACCTGATACCCAACAACTCCAAAATTTGACATTGCAAGGATACAAAGGTGAAAACTTTCCACTGTGGCTGTCAAGTTCTTCTTCCCTCAAGGATTTAGCAATCGTGGGGTGTCGAAAATTCATCCTGTCATCAGGTTTTCGATGCGTTGAGGATTTGTTGGTTTACCGGTGCAAAGAGGTGGAACATTTGCATGAGAGTTTACAACGTATGAGTTCTTTGCACTCGTTAAGATTATGGGATCTTCCGAACGTGGAATCACTGTCTGGGTGCTTTGCGAACCTTCCTTTGCTTCAGAGTTTATCATTACTTGATCTCCCAAAGCTGAAATCCTTGCCTGACTGCTTTGGACGCGTTCCCTTGCTTCGGAGTTTAACATTGCGGGATCTTCCAAACGTGGAATCCTTACCTGATTGCTTCGGGAACTTTCGCTTGCTTCGTGAAATGGTTATTGGTGACTGTTCCAAGTTGGCGTGTCTTCCTACGAGCCTGAACCTGAAAAGTTTGGAAAAAGTGGAGATTTACAATTGCCCTTCGCTATATAAGAGAAGGGAAGAGGAAAATTGA

Promoter Sequence:
>Vu_13974::LG3:41304598-41306598(+)

AATTAGGAAGAGACTCTGTTGCTTCATCAATTCATTGGCTCTAACTCTCCTCCTTGATTCTCATATTTCATCATCTAAAAGTTTAAGTATGGAGATCACTAAAATCATAATTGCTGTGTTATTGTTTATGTCATGTTTGAGTGTGCAGGCCAATGCATATTATTACAGGCAATGTAGCACCAAAGGAACTCGATGCTATGGAAAATATATTAGATGTCCGAATGAGTGTCCCAGCAGTGAATCAACAGATCCTAAAGCTAAGGTTTGTCATATTGATTGCGACAAACCCATATGCAGAGCAGTATGCAGAAGTAAGACAAAACCATCATTTCATTCTTCCTCTTTCTACCCTTCAATTTCTCTTTGCTAGTTATTTTATTTGAAGTAGAATTGAGTTAGACCTTAAGTTAATCAGGTTTAAGATATATCCTAAATCTTAAAGGGTGAAATTGACAGAAGTTGAACAAGGTTTTCAAATGGTCTAAAACTTGGTTCTTTTAACTAATTAAGATTCTTGTGTACAATGTAAAGTATGAAGAAGCATTAACATGCATGATAAAATTGGTGTTTGTGATGTGAAGGTCGCAAACCAAACTGCAATGCACCAGGATCGGGTTGCTACGATCCCCGTTTCATTGGTGGGGATGGAAGAGTGTTCTACTTCCACGGAAAGAGCAACGAACACTTCTCCTTAGTCTCAGACTCCTCCCTTCAAATCAATGCTCGCTTCATTGGACACAGGCCAGCAGGTAGAGCCAGAGACTACACATGGATTCAAGCCCTTGGAATCCTCTTCAACTCCAAAAGCTTATCACTTGAAGCACCCAAAAAATCCCAATGGAATGAAGATGTTGACCATCTCAAATTCACATACAACGGAGACCATCTGGTTCTTCCTGAGGGCCCTCTCTCCTCTTGGCACTCTCCAGAAAAAGATGTGAAAGTGGAGAGAGTAGCTGCCAGGAACAGTGTGATAGTGACCCTTGAGGATGTTGCTGAGATATTGGTGAATGTGGTGCCAGTGACCAAAGAAGATGATGCAGTTCACAACTACCAAGTGCCTGAGGATGATTGCTTTGCTCACTTGGAAATTCAATTCAGGTTCTTTGGGTTGTCTCCTAAGGTGGATGGTGTGCTTGGGAGGACTTATAGGGAAGATTTTGAGAACCCTGCAAAGGTTGGTGTGGCCATGCCTGTTGTTGGAGGAGAGGACAAATACAGGACTACCTCCTTGCTTTCTCCAAACTGTGCTTCTTGTGTCTTCTCTCCATTTACTTCCCATCACACTGAACCCACTCAAGTCGCTCCAGAGTTCATGGCCACCCTTGATTGCTCCAAGTTTTCCTATGGCTTGGGAATCGTTTGCAAGAAATGAAAAATCTCATTCATTAGAGTGCAGTGAAAAAAACTAATAAGCCTAGTTGAGGTGAAAGTCTGAAACCTTCTAAATTTAATGTCTGAAAAGTTGTTACTTCTTTGATGTATTTCAATGTTCTATAAGTCCTATATTAATGTGTATTGAGTACTTGAATAAAAGTTTTAAAAGATAACTCAACTGAAAAGTAAAAATCCACAACCTTCAGTAAGGCAGACCCATAAATATGACTCTTGAACGACGATACCTATCATGCCAAGTTCCATCAAATCGAATATTTAGTAATGAATCCATCAGAACTTCTATCAATGTCATTACTTATAATTTACTCTTATTTGTCTCCTAACCCAAAAGGTGCTTGTGGTATGTAGGAATATGAAAGAGAAGCCCTTTGGGAAAAGGAATAAAGAAAAGGCTAATGAAAATTAATCTAGCAGATAATAAGTATATTTCTATAATCTCAGAAACAGAGGGGAAAAAAGGAAATGCTTTGATTACACTCCAAATCTCATCTATATACCAAGAAAGAGACAAATAGAAAAGGGAAATCTCATCGGTGATTAAGGGAATCCCGGTGACTTGTGCATGCAGCTGCTATAAACTATTCGGAGATTGTTGAATTAAA

Gene Sequence:

>Vu_13974(+)