Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_13946	LG3	40836659	40836970	PREDICTED: probable receptor-like protein kinase At1g11050	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	40836694	missense_variant	p.Asp93Asn
G/A	40836717	missense_variant	p.Ala85Val
C/T	40836724	missense_variant	p.Val83Met
A/G	40836738	missense_variant	p.Leu78Ser
A/G	40836749	synonymous_variant	p.Tyr74Tyr
C/T	40836760	missense_variant	p.Gly71Arg
G/T	40836804	missense_variant	p.Thr56Asn
C/T	40836822	missense_variant	p.Gly50Glu
A/G	40836825	missense_variant	p.Ile49Thr
G/A	40836840	missense_variant	p.Ser44Leu
C/A	40836844	missense_variant	p.Gly43Trp
C/T	40836864	missense_variant	p.Arg36His
A/C	40836885	missense_variant	p.Leu29Arg
G/A	40836901	stop_gained	p.Gln24*
C/T	40836908	synonymous_variant	p.Glu21Glu
T/A	40836909	missense_variant	p.Glu21Val

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_13946.1

MSSLLGLYVWCDRKHRRKKLETFQFDFDLEEERCRRRLRPNTGSIWLKIGELEKVTDNLSSKNLIGRGGFGLVYEGTLSNGTVVAVKRILESDFQGDVELCLH*

CDS Sequence:
>Vu_13946.1

ATGTCTTCTCTCTTAGGGCTTTATGTGTGGTGTGACAGGAAGCACAGGAGAAAAAAGCTTGAGACTTTTCAGTTTGATTTCGACCTTGAGGAAGAAAGGTGTAGGCGTAGATTGAGGCCTAATACAGGGTCGATTTGGTTAAAAATTGGGGAGCTTGAGAAAGTCACTGATAATTTATCATCTAAGAACTTGATTGGTCGTGGTGGGTTTGGGTTGGTTTATGAGGGAACCTTGTCTAATGGGACTGTGGTGGCGGTTAAAAGGATCTTGGAATCTGATTTTCAAGGAGATGTGGAGTTGTGTTTGCATTAA

Promoter Sequence:
>Vu_13946::LG3:40836970-40838970(-)

ACCAAGAACCCCATGTTCCATTCACGCTCGAAGCATATCGACGTGCGGTATCACTGGATACGAGAAGCGCTGGATGAGAAGAAATTAAAGATAGAGAAAATCCATACAGACTTGAATTGGTCTGATATGATGACTAAGTCAGTACCAACCAAGAAGGTTGAAGATTGTTGTGAAGGTGCTGGTGTCATAGTACCTTTTTTCAACTAAGTCAAGATGCAAAGATGGGAAAGAAGATCCATTTAAGTTTATGGGGGAGTTTTGTTGGATAAACATAAATGGGTCTCACACCCTAAATTAAGGGTCAATGATTTTCCATGTTTTGCTCCATGGTTTACTCCATGCTTTACTCCATGTTTTTCAGCTTTGTTGTTTTGGTATTTTTTGTGAAGCCCTTCTATAAAAGGGTAGAAGCAAAGAAGTGAAGACACACCAACATAGAAGCAAAAACACAATCCATCGTGAGAGAAGTGAAGCCACGGTGAAGGGGAGGAAAAATAGAGAGAGTGTGAGTGTGAGAGTTTTGTATACCATCCGAGAGGGTGAGATATTTGTAGAGAGATCCTCAGAGAGTGAGAGAAACTCTGTAATCCTACTTTCATAGTGGGGATAATTTTCTGGACTCAGTCCCGTGGTTTTTCCCGAGAGAGTTTTTCACGTTAAAATTTTCGGTGTTATTTTTCCCTATGCCTACACTTTCATTTACACTTCTATTTTTTACGCTTCCGCATAGTGCCCATTTTGGGGTTCACAGAGAAGGGAACAAGTACCGCTGTATCCCAACACTTGCTAAGCCTCTTCGAGCCCTTCCTATAAAGAAAATATCTCCAGCTAAAATGCAATTGAGAAGGGAAAAAGGCTTCTGCTACTTTTGTGATGATAAGTTTACTTTTAATCACAAATGCCCCAACAGGCAAATGCTGATGTTGCATGGTGAGGAGAATGAGTTGGACAATGAATTGTTGGTGAATAAGGAGCATACTGAGTCCATTTAGGATTTATATGAAGGTACTGAGATTGATCATCATTTATCCTTGAATGCGTTAAAAGGTGGGTTAGGAGTTGGTACTATCCGTTTTGAGGCACTAGTTAACAATTTACCCATTAGTGGATGGAGGAGTTCTGATAATTTTATCAAACCAAGAATAGCCAAGTTTTAAAAGTTGAATGTTGAACCTGCTCATGCATTTCGAGTCAAGGTAGGTAATGGGAATTATATGGCTGCAGAGGGTTTGATTAAAGATTTACTTATTCACGTGCAAGGAAGTACTTTCCACCTGCCAGTTTATGTGCTTCCCATATCTGGTGCTGATTTAATTTTGGGGGCAAGCTAGTTGAAGACTATTGGTCCACACAGCAAATTATGAATCTTTGCAATTAAAGTTTCTCCATCAGGGCCAGTTTATTACTTTGCTGGGTGACGTTAGCCATATTCCTTTACATGCCCATCTTCATCATATTAGAAGAATGGTTCGTATTGATTCTATAGCAGAAATTTTTAGTATGCAACTGATGGAATCTAAGAGTACTAATAGCTTGACATGCCTACGTGTCACTTACACTCATTTGACATGGTCCAAGTCATCTTTTTTAAAAGAAAATTGCATACTGATTGAGAGTAAAAGTGGAAAAATGTAAATTGGGGTTTCTTTCTTGTTTCGGTTGTGAATCGAAATCCCCATTTAGGTTTTGTTTTAAAAAACATTCTCCATCGTTCTTCATTGGCGTAGTTCCTTCCCATTTTTGTGTTTGAGACGATTCAGTCGTTGGTTGTGGAGGTTTTTGGTTGTTGTGAAGGTGAGGGTTGTGGAGGTTTCCGGTTGGCGTTTGGATTTTTCTCACGTCTGTCGTGTGTGGCTTTGAGGTACGGGGTTTTGAATATTTTTTTCTCTCGTAGTTTTTGTCGTTATGTGTAGACAGCTTGTATGTGATATTTTAGCATTCCAGTTTATTCTCAGGCTCTTATTTTTGTTTTGACAGGAGCTGGGGTGACTTTGCTGGTG

Gene Sequence:

>Vu_13946(-)