Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13877 LG3 39756730 39757338 hypothetical protein LR48
 Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, response to blue light, response to absence of light, positive regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   transcription cis-regulatory region binding, transcription cis-regulatory region binding, sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, RNA polymerase II-specific
SNP Position Effect Amino acid change
G/C 39756781 missense_variant p.Ala18Pro
G/A 39756816 synonymous_variant p.Gln29Gln
G/A 39757106 splice_region_variant&intron_variant
G/A 39757115 intron_variant
A/C 39757118 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13877.1
MGDLFFSFKTQEHGHQRAKHNKKRLTEEQVTILEKCFASNMKLEPEQKFHLANQLGVPPRQVAIWYQNKRARWKTQSLEVDHGVLQAKLENVMAEKKQLEKDVERLKADLKKAQEMLLIGDVVKEGGSSGVVLDDHECWQSGEVMQVEELYAYFMGANYGSGLHEKRA*


CDS Sequence:
>Vu_13877.1
ATGGGGGATCTCTTCTTCTCCTTCAAGACCCAGGAACACGGTCACCAGAGAGCAAAACACAACAAGAAGAGGTTAACCGAGGAGCAGGTTACGATCCTTGAGAAATGCTTTGCTTCCAACATGAAGCTTGAGCCGGAGCAGAAATTCCACCTTGCAAACCAACTTGGTGTTCCTCCAAGACAAGTTGCCATTTGGTACCAGAACAAAAGGGCACGCTGGAAGACTCAGAGCCTTGAGGTCGACCATGGTGTGCTTCAGGCAAAGCTTGAGAATGTGATGGCCGAAAAGAAGCAGCTCGAGAAAGATGTCGAAAGGCTCAAAGCTGACCTCAAGAAAGCCCAAGAGATGCTGCTAATTGGTGATGTCGTCAAAGAGGGAGGGAGTTCAGGTGTGGTGCTTGATGATCATGAGTGTTGGCAGAGTGGTGAGGTTATGCAGGTTGAGGAGCTGTATGCTTACTTCATGGGTGCAAATTATGGGTCAGGCTTGCATGAGAAAAGGGCATAA


Promoter Sequence:
>Vu_13877::LG3:39754730-39756730(+)
TAGTTTTATCTTTAGTTGACGTATATAATTCAAAACTTCTGGTAAGATTCTCAAACAAGGGTGTTATTGAAGAAGCTTTGTTCGAATACATTGAGGTAAAGTGTAATAGGATAAGCTTACTGAGCACACACCGACAAATAGAAAGTTATAGTTGGGACAAGATACTGTTGTAAAATGTGTAGTTATTATTATTTTCACTTTCACTATCAATGCAACTGGCATTGGCGTGGCATGTTCAGTTGCATGAAGGCAAGAACTAAGTTCATGCACTTGGGATAGGAAGAGAGGAAGTGAGGCTATGAGCCATCCATTTCTTCAAACAGATTCAGTGAAGGGTTGCAACTTCATCATTGTGTGAAATAGTTTAGCTTTATGTGTAAACCAGTGTGAGATCAAAGGATGCATGAACTTAGGCCTCACCCACAATTCTTTTATACATGGGTGGGGAATATCTTGTCACCTTCCAAACGACACACCCTCTCATAATTGACTTAACATATACAGTATCTCATTAATCATTCCCATCTTTCCAATTAAAGTTAGATTAGCTTTGTTTAAGTTCAACCAGACAACCTCCATATCACAACTTAATGGAAATAAATCATTAATAATCACTATTTCTAGCTTTGTCTCATCCAATCTTATCACCCATATGTCTAAGTAAACGCTGTTCAAAAGATTACCTAGGATCTTTAGCAGGATTCGATAATATGTTTCAATTTTTAATTTTAAATTAATACGAAGTACTATTCAAACTTGGGAAAATAAATATATAAAAATAATTTGTGCTCTTTTCTTTCTTTTTTATATTTATGCATATAGACAAAAAAAACTAATTATTTCTATATATATTTATTTTTTCTTTGGTAGCACTTATAGTTACCTATTTTTTTTTAATGTATTTATTTTTGTTTTTCTTTCACTCAAAATTTGGTCAACCTTTAAATTTTTTTATGTGATTGGTCAAATCACCTATTTTTTACTTTTTTTATTATAAAATCATTAAATAGAAATCAATTTTAGAGATTAAAAATAATTTATCATTATATTGATTAATTTAGATACCAATTTATAAACAAAAAATTATAAGTATTTAAAATAGTTTCTTATGAATAAAAAATTATAATTGATTTATAAATGAGAGTCTAAATTAGTCTCTAACCTTCCTAATTTAGACATTAAATTTTTGGTAGCCATGTGTTAGCTAATTTTAGAAACCAATTTACATTCTAATTCACAAACTAATTATAATTTTTTATTTATGATAGAACTTATTTTAAGTACCAATAATTTTTATTTTATAAAATAATTTTTAATTTTGTTAATATAGTGATTAATTATATTGATCTCTAAAATTTGTTGTTATTTAATGATTTTATTGTAGTGTTTTTTTTTCTTTTAAGATGACTTGTGACTTACTTTCCCTTCACAAACATTTCTTTAGCATTGTTATTTCATATTCATCCTTTTTCCTATTTTTTTTTTCAAAAATAAAGTCAAATGTTAATGGTGTTAGTAACTAAAATGAGATAGAATTGTTTTATATTATTTGATGACATGTAAAGTGATGGTGCAAACTTTATTTACATGAAAATTGTACTTAATTTGAATATATTATTTTAATACAAAACTTATTAATCAAGATCTAATATTATATATATATTTCCTTTAGATGTCAAGTAACGTGACATAAACACAGTTGAATGAAAAAAACTATTAATCATGGGATGTCTTTTTTTATCGGAGGGAAAAACAAGGGAACAAGAAACGGGACAAGTGGTTTTAATCCTACATATGCATGTAGACAATTCATGTTTGCCAGCCATAGCGTAGTATTTGCAAAGACTAAAAGCTCTCTGTCACTGAGTTCAGTGGGGCTCTTGATGTGTCTCAAGCTAAAAAGCCTTATAAAACAACAAGCACTCTACTTTCCCTTACGAAGAACACACTACTCACCAAATCCAATTCATCTCGTTGTTCCAAAGTTTCACGGAATCAAA


Gene Sequence:
>Vu_13877(+)
ATGGGGGATCTCTTCTTCTCCTTCAAGACCCAGGAACACGGTCACCAGAGAGCAAAACACAACAAGAAGAGGTTAACCGAGGAGCAGGTTACGATCCTTGAGAAATGCTTTGCTTCCAACATGAAGCTTGAGCCGGAGCAGAAATTCCACCTTGCAAACCAACTTGGTGTTCCTCCAAGACAAGTTGCCATTTGGTACCAGAACAAAAGGGCACGCTGGAAGACTCAGAGCCTTGAGGTCGACCATGGTGTGCTTCAGGCAAAGCTTGAGAATGTGATGGCCGAAAAGAAGCAGCTCGAGAAAGATGTCGAAAGGCTCAAAGCTGACCTCAAGAAAGCCCAAGAGATGCTGCTAATTGGTGATGTCGTCAAAGGTGGAAAAAATAGCAATTATAATAATGGTAATAACAATAAAAATAATAATAATAATAATAATAATAATGGTTCTTGCTGTGAGTTTTCGACTTCTTTTGAAGAGGGAGGGAGTTCAGGTGTGGTGCTTGATGATCATGAGTGTTGGCAGAGTGGTGAGGTTATGCAGGTTGAGGAGCTGTATGCTTACTTCATGGGTGCAAATTATGGGTCAGGCTTGCATGAGAAAAGGGCATAA