Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_13834	LG3	35990208	35991671	PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
A/T,C	35991558	missense_variant	p.Ser451Arg
G/T	35991559	missense_variant	p.Ser451Ile
T/C	35991584	synonymous_variant	p.Gly459Gly
C/T	35991614	synonymous_variant	p.Ala469Ala
G/C	35991615	missense_variant	p.Val470Leu
A/G	35991621	missense_variant	p.Arg472Gly
A/C	35991635	missense_variant	p.Lys476Asn
G/*,C	35991658	missense_variant	p.Arg484Pro

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_13834.1

MDTSSSPYALIFACLLCTMMFDAGTCNFNNRCSKKDTQTLLNFKKGVMDPSGVLSSWSTQQDCCEWRGVKCDRINSRVTRLSLPCFTSIPNYIDKEDKSHCLTGTFSLSLLMELEFLNYLDLRNNDFLAIQFDSVHNQNYYNLSVSIRPPQYLNSSTLRYLDLSLNDNLVINSLQFLFRMSSLEYLYISGVDLHMETNWLQIVTMLPSLSVLRMSYCQLKDLNPSLQHANFTALKILHLSGNKFHSELPKWLFNISCGLSGIFLSSCSLTGQLPKALLNLQHLEDLDLENNDLNGSIPDWIGELDHLQYLFVDGNMFSGFIPKSLGNLSSLTSLSVGDNQFTGVVSERNFAKMSKLKNLDIYSSPPLIFDFDSHWIPPFQLENLWLSFSGPHLPAWLYTQRSIQGLSIYGSSFQAPDKFWNFVSRVSKLSLEYNSIDGNLSNILLNSTVVSLSSNGLKGSLPRLSSNVAVVRLSNKSLSGSISRSLV*

CDS Sequence:
>Vu_13834.1

ATGGATACATCTTCTTCTCCATATGCACTCATCTTTGCATGTTTGCTATGCACAATGATGTTCGACGCCGGCACTTGCAACTTCAATAATCGTTGCAGCAAAAAAGATACACAAACTCTCTTAAACTTCAAGAAAGGAGTCATGGATCCATCAGGCGTACTTTCTTCATGGTCCACTCAACAAGATTGTTGTGAATGGAGAGGAGTTAAGTGTGACAGAATCAACAGTAGAGTCACTCGGCTCAGTCTCCCATGTTTTACAAGTATTCCTAATTACATTGACAAAGAAGATAAATCACACTGCCTCACAGGTACCTTTTCCCTTTCCCTGTTAATGGAGTTGGAATTTCTAAACTACTTGGATTTGAGAAATAACGACTTCTTGGCGATCCAGTTTGATTCTGTGCATAATCAGAATTATTATAACCTATCTGTATCTATCCGTCCTCCGCAATATCTCAACTCATCAACTCTTCGTTATCTTGATCTGTCCCTTAACGATAATCTTGTTATAAATAGTCTTCAATTTCTTTTTCGCATGTCCTCCTTGGAATATCTTTACATCAGTGGCGTTGATCTTCACATGGAAACTAACTGGCTTCAAATAGTCACTATGCTACCATCGCTTTCAGTGCTCCGCATGAGTTATTGCCAACTTAAAGATTTGAATCCATCTCTTCAACATGCTAATTTTACTGCACTCAAAATTCTTCATCTATCAGGAAATAAATTTCACTCAGAGTTGCCTAAATGGTTATTTAACATTAGTTGTGGTCTTTCTGGTATTTTTCTTAGTTCATGCTCTTTAACAGGACAACTTCCTAAGGCATTGTTAAATCTTCAACATTTGGAAGACCTGGATTTGGAAAACAATGACCTCAATGGATCAATACCAGATTGGATAGGTGAACTTGACCATCTACAATATCTTTTTGTCGACGGTAACATGTTTTCTGGATTTATTCCCAAAAGTTTGGGAAATCTATCATCCTTAACTTCCTTGTCCGTTGGCGACAATCAATTCACAGGAGTTGTGTCAGAGAGAAATTTTGCCAAAATGTCAAAATTAAAGAACTTGGATATATACTCTTCACCACCATTAATCTTTGATTTTGACTCCCACTGGATTCCACCTTTTCAACTTGAGAACCTATGGCTCTCATTTTCAGGTCCTCACCTCCCTGCATGGTTATATACTCAAAGATCTATTCAAGGTTTATCTATTTATGGATCATCGTTTCAGGCCCCAGACAAATTTTGGAATTTTGTATCAAGGGTGTCCAAACTTTCTTTAGAATATAATTCGATAGATGGGAACCTATCAAACATATTGTTGAACTCTACAGTGGTAAGTTTGTCATCAAATGGTTTGAAAGGTTCCCTGCCTCGATTATCCTCGAATGTAGCCGTTGTCAGGTTATCAAACAAATCATTATCAGGAAGTATCTCTCGCTCTCTTGTGTGA

Promoter Sequence:
>Vu_13834::LG3:35988208-35990208(+)

AGCAATGAACTTGAGAGGATTTGTTTGAATAACCAAAAATGGTTAATAATGGGAGAGGATTTGTTTAAAATGAATAACCAAAAATGGTTAGTGTTTGTTGCACATGTTTCAAACAGTCAAAACAACGTGAATAACAATGTAATGAACAAGTAGCTTATTAACTTTCTTTCCAAAACTTGATAGACATGACATGTTACCATTTTTTCTCATTAACTTTCTTTCCAAAAACTAGTCAAACGCATCAGTGTGAAGTACCTCTCAGAAATAAATAGATTGAGTTTTCAGTGAGAAAGGTTAGAAAAACAGAGAAAAAAATGGGGGTTTCATTGAATTACTGCTAACTCTATAATAGAGGTAGTACACACTTATGAAAAGATAATAAATCTGTCTTATTTAACGAATAACTAATGTCTTATTTCTTTTTATTTTTCTTTCATGGATCACTATTTTATTTTGCTTAATACTTCATGTCTCATGTTGACAAAAATAAACACTTACCTTTTATCAAGTAAATATATATAAAAAATTTAGAACCAAAAATTCTAAAGTATTTTTTTTTTCGGCTTAATACCAATTTTGGTCTCAATTTTTGTCAGTTTTATTCGAAATGGTTCTAATTTTTTTTCTGTTCAATGTTGTCCTAAAGAATGTAATTTATGTTTGATTTAGTCCTTTTTGTTGTTAACGACTGACAATCTAGGTGTGCAAAAGACTAATGAAATGACATTTAACTGTCCACGTGGACACCTTAAGACACAATGAGGTGGATTTATTGATTTTTTTGAAAATGCATTTCTGATTAAGGTCTCAGCTCGCCAGACCACCAACTTCACGCATCATCTTCCTCGCGCTTCCAAAACCCATTTCAGGCCGTTGTTGCTGTAAGAATCGCGTCACTCAACGTGAGAACCTATAACCACCACATCTCCATCCGCGACGCCATCAAACCTAAAGCAAATCACGAGTCTTCCTCTTCTAGCACCAACCTAAATCGTGAGTTTCGCACAACATTCATAGCCAACAACGCAATCTCCATGGTCGCCGCTACCACTCTCCCTTCTTCAACGCGCCACCGCGACACACACACCTTCATCATCCTCGCCAACCCCAAACCTGCAAACCACAAGAACCAGAAATCTGCAGGACCACAAGCTTAAATCGCAAATCCCTCTAGCGAACCGATCGGCTCTCATGCTTGCACCGTTCGGTAGCCTCACCCCTTCAGCTATTTGGTTCCCTTCTTCTTCTCTCTCATCGCTCGGCCATTGGATCCCATTTGGTAAACCCAAGTTTCATCCATTTGTCCACACTACCTAACAACCCCATCAACACCAATCCGTGTTACTGCGTCGTCACCTCCTTTGCCTCATCCTTCGCTTGCAGCGGCTGCGGGTTCACGTCCAAGCCCTTGGGAGAACCTCCCTGCATATGGCCACAAGACCCATACACTTTCATTAAATAAATGGCATTTTTTTCAGAATCCACCTCACTGTACCTGGAGGGAATCCACGTGGGCAGTCAAATGGCATCTCATTAGTCTTTTGCACACCTGGACTGTCAGCCGTTAACGATTTAAGCACCGTCTGTAAAAAAGACTAAATTGAACATAAATTACATTCTTTAGGACAACATTGAACAGGAAAAAAAAATTGGACCATTTCGAATAAAACTGAGAAAAATTGGGACCAAAATTGATATTAAGCCTTTTTTTTTCTTTCAAAACTTAGAGAATTACACTAACTAGGAAAATAAATAATATCAAATTCACATTTTTTTTTTAAATCCTTTAAAAGTAATACAAACCTTGTTGACCGGTATGGTATGGACACCACGGGATGAAATTTCTCTGTAAAGATCGTTAAAATACATTTTTGGAACTTCATTTTATTATAGATAATAGAAATGATTATGAAGACTAGCTTTCACTTGTATAAATAAGTTCCTCTGAATGAAGTTGAAGTTCATCCCTCCTACCTTGCCTTTTCTTTCTATCCTAACCA

Gene Sequence:

>Vu_13834(+)