Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13691 LG3 32747541 32750781 PREDICTED: LOB domain-containing protein 18-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   positive regulation of transcription, DNA-templated, lateral root formation, positive regulation of transcription, DNA-templated, lateral root formation, hormone-mediated signaling pathway, xylem development, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway, hormone-mediated signaling pathway, lateral root formation, positive regulation of transcription, DNA-templated, callus formation, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, hormone-mediated signaling pathway
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, protein binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
T/C 32747549 synonymous_variant p.Thr3Thr
G/A 32747556 missense_variant p.Gly6Ser
C/T 32747567 synonymous_variant p.Asn9Asn
T/C 32747585 synonymous_variant p.Gly15Gly
A/G 32747587 missense_variant p.Asn16Ser
T/C 32747594 synonymous_variant p.Cys18Cys
G/A 32747597 synonymous_variant p.Gly19Gly
A/G 32747615 synonymous_variant p.Arg25Arg
G/T 32747660 synonymous_variant p.Ala40Ala
T/A 32747669 synonymous_variant p.Gly43Gly
C/T 32747681 synonymous_variant p.Phe47Phe
T/C 32747693 synonymous_variant p.His51His
C/T 32747813 synonymous_variant p.Tyr91Tyr
G/T 32747866 intron_variant
G/T 32747900 intron_variant
G/C 32747949 intron_variant
A/G 32747952 intron_variant
C/T 32747973 intron_variant
T/G 32747974 intron_variant
G/C 32748035 intron_variant
A/G 32748102 intron_variant
T/C,A 32748134 intron_variant
A/G,* 32748163 intron_variant
A/G,* 32748165 intron_variant
A/G,* 32748167 intron_variant
A/G,* 32748169 intron_variant
T/C 32748172 intron_variant
A/G 32748173 intron_variant
A/G 32748175 intron_variant
T/C 32748182 intron_variant
A/G 32748185 intron_variant
T/C 32748186 intron_variant
A/G 32748189 intron_variant
A/G 32748193 intron_variant
A/G 32748197 intron_variant
A/G 32748199 intron_variant
G/A 32748215 intron_variant
G/A 32748219 intron_variant
G/A 32748231 intron_variant
G/A 32748235 intron_variant
C/T 32748257 intron_variant
T/A 32748627 intron_variant
A/T 32748660 intron_variant
A/T 32748726 intron_variant
T/G 32748875 intron_variant
T/C 32748969 intron_variant
G/A 32749011 intron_variant
G/C 32749178 intron_variant
A/T 32749215 intron_variant
A/G 32749276 intron_variant
T/A 32749279 intron_variant
C/T 32749387 intron_variant
T/A 32749435 intron_variant
C/T 32749480 intron_variant
C/T 32749531 intron_variant
T/C 32749575 intron_variant
A/T 32749634 intron_variant
G/A 32749706 intron_variant
G/A 32749802 intron_variant
T/A 32749885 intron_variant
T/C 32749915 intron_variant
C/G 32749929 intron_variant
T/C 32750005 intron_variant
A/G 32750021 intron_variant
A/G 32750140 intron_variant
T/C 32750222 intron_variant
T/C 32750227 intron_variant
C/T 32750284 intron_variant
T/G,* 32750315 intron_variant
G/A 32750435 missense_variant p.Gly116Asp
A/G 32750466 synonymous_variant p.Pro126Pro
A/G 32750469 synonymous_variant p.Pro127Pro
A/T 32750472 synonymous_variant p.Pro128Pro
T/A 32750484 synonymous_variant p.Ser132Ser
G/T 32750502 synonymous_variant p.Leu138Leu
G/C 32750589 synonymous_variant p.Thr167Thr
C/T 32750751 synonymous_variant p.Asn221Asn
G/A 32750766 synonymous_variant p.Leu226Leu

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13691.1
MNTGSGNSNGNSSSGNPCGACKFLRRKCIQGCIFAPYFDAEQGTAHFASVHKVFGASNVSKLLLSIPVHKRLDAVITICYEAQSRLRDPVYGCVSHIFALQQQVVSLQAELSYLQGHLAQMEGPHPPPPPPSQSATALRFSMADLPSAATGAVAPATTYDLSSLFDTSGQISWAMQQRAFDPRQYVAAPPSSSTRANVEAVARDLPRRHGSPPSPPASSCNASPSLSLSK*


CDS Sequence:
>Vu_13691.1
ATGAATACTGGTAGCGGTAACAGTAACGGTAACAGTAGTTCTGGTAACCCTTGTGGGGCTTGCAAGTTCCTCAGAAGGAAATGCATTCAGGGTTGTATCTTTGCTCCGTATTTTGATGCGGAGCAAGGTACAGCCCATTTCGCTTCTGTGCATAAGGTTTTTGGGGCTAGTAACGTGTCCAAGCTTCTCCTTAGCATTCCTGTGCACAAGAGGCTTGATGCTGTCATCACCATTTGTTATGAAGCACAATCACGCCTCAGAGATCCTGTTTACGGCTGTGTTTCCCACATCTTTGCCCTTCAGCAACAGGTGGTGAGCTTGCAAGCAGAACTCTCATACCTACAAGGCCACCTTGCCCAGATGGAGGGACCTCATCCACCACCACCTCCTCCATCTCAATCGGCGACGGCACTGCGATTCTCAATGGCTGATTTACCATCGGCGGCCACCGGAGCTGTGGCGCCGGCCACCACCTATGACTTGTCTTCACTTTTTGATACGTCGGGGCAAATTTCATGGGCCATGCAACAAAGGGCATTTGACCCACGTCAATACGTGGCAGCTCCTCCATCAAGTTCTACTAGGGCTAACGTGGAAGCAGTGGCACGTGACCTTCCTCGTAGGCATGGCTCTCCTCCATCACCTCCTGCATCAAGCTGCAACGCTTCACCATCTCTGTCTCTTTCCAAATGA


Promoter Sequence:
>Vu_13691::LG3:32745541-32747541(+)
AATAATATCACCCACTCAGGTGACCAGAATTATAGGGTTGCATGCGAGTCTTAAACGAACGTGCTTAAAGCGAAAGAACTCACCAGCTCAGAATCACAAACCGATCGGTTTAAATGGAAGCTCTTGACGTCGATAATGTTTCAGCGGTGCCTGAGAGGTGATCGAAAGAAGAAATAGTGAGGTTTTCTTAGAGAGAAGAAGGAGATTTTAGAGAGAAGAAGGAGAAAATGGTTTCAGCAGGGTGGGGAAGAAGAAAAACATGTAGAGAAGTGGCACGACATTTGAAATTTGGTCTTAAATACTGCCGTCGCCCAAAACGAACGACCACTCTCCTGCAGCCACCTGTTCTCCATTAACTGAGATGCTCACTCACTTCTTGGCACATGGATCCCGTTACTTGGGGTTTTTGGGTGTGTTTTTAATGGGGTTTGACAAATGTTATCCTTATATTTTCAAAATACATCTATGTACATTAATTTTAATATTTTAAAATATATTAAAAACTTTTTTAATATATATTATAAGAGTGTTAAGAGTCAGTTAACTATATTTGTGCGTGTTAACTCACTACAAGTTGAACTAAAAATAAATAAATCAAACTTAATTTATTCTATGACGAGTAATCTAATTTGATCCCTGACAAAATTGGTGGATTAGATGAATTAACTCACTTAAATTTTATTTTTAACTTATTGTATATAATTGTTACGTACAGTCAATGAACTAACTGAATAATTTTTTTTTATAACATTACCATCCAAGAACTAATGTATTTCATCAAACATGATTATAAAGATAATTTTAAAATTAAAGTATTAACCTACATAGTTTTTCAAAATAAATTAAACATCAAAACTATTTAATATTATTAAAAACATTATAATATTTTAAAGAAATCAAAATGTTAACTAAATAATTAGAAGTAATAAATAATTATAATAAATAACTTACGAAAAAATAATAAGAAATTGTTTTTTATAAATTAATGATCATCTCCTCCTTAACTCGACTTCAATCCATTTAATTTACATTTAATTTAAATTAAATGATGAGATTCCGTTTCGTCCACATTTAAAAAAAATTAATATTTTTTTTAATCTAATCTGATTAGAACATGTAATAAATTAGTTCTTTCATGAATTTAAATATATTTTAATATCTAGAGTAATCGTATCATGTCACACTTTTACATTAATTTGACACACAATATAAGAGTAAAATAGTCATAAAAGTGTAAATATTTGTATTTTTTTCAAGAAAGAAGAGAATAAAAAATTTTTTTAAATAAATGTAAAAAATTTATGTGTGTCTAATAATATTTTTCTAATATCTATAGTATTATGAAGAGACACCAATGTCACAACACCAAAATATCAAGAGAAGATCTCTATTGTTTTTGTCCACATAAAGCCAAATAATGCAAATGGACACATTCTCTTTGATGTATATCATATTATAAACGCGTAAAAATAACAAAAAAAATTGTTGTCTTTAGTTTGGCCTGGCTCGGTTACAAAAACCTCTTTTATGATTACATCATCTCTTGGTCCAAATTCAAAGCTTCCTCTTCCAACACATACCTTTATCCTCACATGATAGCAACTAGGGGAAGTCTCAAAAGTGTGTGTTTTTGAAGAGAGAGCATGTTTGTGTGTTAAATGTATTCACCATCACGAGAGGAACGAAGCCAAAACAAGTTTTGAGTGCGAGCAAACAAGCCATAGCTAGCCACCTTATACCTCATGTTTTTCTTCACGCAAACAGCTAAATGTAGATGTTAAGCCTTTGCTCCCTCGCGTGCCTTTTAAGACTTCTTCTTTCCCATTAAATCCCCTCATTAAATCTCCCTAACCCCACCAAACCTATCCTTCCTAAATTCTTCCTCACAACACTCCACCCTTCTCCTTCTTCTTCTCTTCCTTTTTCCACCTCTCACAAAATCCTCCCTCCATAACCTAATCATTTCATATCCTTCTCACCTTTATAATTTTACTCCGACA


Gene Sequence:
>Vu_13691(+)
ATGAATACTGGTAGCGGTAACAGTAACGGTAACAGTAGTTCTGGTAACCCTTGTGGGGCTTGCAAGTTCCTCAGAAGGAAATGCATTCAGGGTTGTATCTTTGCTCCGTATTTTGATGCGGAGCAAGGTACAGCCCATTTCGCTTCTGTGCATAAGGTTTTTGGGGCTAGTAACGTGTCCAAGCTTCTCCTTAGCATTCCTGTGCACAAGAGGCTTGATGCTGTCATCACCATTTGTTATGAAGCACAATCACGCCTCAGAGATCCTGTTTACGGCTGTGTTTCCCACATCTTTGCCCTTCAGCAACAGGTAAACTATTGATTTTGATTATAACTCTAACTCTTGATATAATTATATGTGATTAACCATGGTTTCTTAATGCGTGTTCTTGGCATGCGCATTATATATGTCAATTAATCGTTTGCTTTCAATCTGGCTATACCTTAATTATCAGTTTTCAATTTCTTCTCCCACACTAAGCTAACCAGTGAATCGCTTCAATCGGTATGCTTTCAAGACGTTTTCTATTGACTGTAGAATCAGAATCATATCAGAAATTATAAAATTTATCAGATTGGGGGTGTTGAGTTTCTTTTAGACTTTCTGTTTCTAGAAACCGTGTATATATATATATATATATATATATATATATATATATATATATATGTATGTATGTATGTATGTATGTATGTATGTAAAATAACTCATGTAACGTTCCAGTTTATTTTGTTTGTTTTCCTGGCCAATAAAGTGAAACCTAAGAAAAGCCGTGTTTTATAATACTTACAAGATTTCCATGGTTTTCAATCTCGTTTTTAATTCTCAAAATAATAACTATTTTTTTTATTGTTGTGTTTTTTTTTTTATATAATTTGGTTCTTTAAACTTTAAAATAAATATAATTGCATTAAATATTTTGACGTGTCAAATAATATTTTAAATTGACGTTTATGTGTTACGTTTATACTGTTTAACATATTTTATTTTGAATATTGTTTAATAAAAAAAAAATTAATAAAATTGAATTAAAATATTTATTTTTAAAGCAGAAAAATAAAAATGTATTAAAAAATTTAGAAAATATATTTTTTTTAATTTTATATTTTAATTTAAGAAAGAAAAACAATTTTGTTAAACTGTTGAGAAAAGGGACACATCTGTGTATTTGTTTTAGTTTGTTTTTTTAGTTTTTTGTTTTGTGGCTTCAATAGTTGAAGTGAAGGAGAAGAAAGATTAACATGCATTGTAGTAGTAGTAGTAGAAGTAGCTTGTGGTTGTGTGCCCTAAGAAAGAAAGGTGAGGTTTGAGGAAAGAGGAAAATAAGGGAGACAGTTTCAATGCATTTCAGTTAATTCCTTAACTCTTATTTGATTAACAAATGATGTGGTCGGCTGTTACACAAATGCCATGGGCCATTACTTCCTTGCTTCTTGCATGTTTTGAGGAGGTGGTCGGTTAGTTCAAGCCTTCGAACAGATTTCATACACGAAATTAAAATAAACATTTTTGTCTCTCTATATCTTTTCATAAAATCACATTCGCAAAAACAAATTCTATATATCAATGTAACATTAATATAGATTAGGAAATCTTAGCATGTCAAATTTTCTTCCCCATTTCTTCTAAATGCGTAGTCTGTGTTAATTAACTATTACTGTGTTCTCTAATTTTTTTAAGGAAAATATTAGATTAATTAAGGCACTAATTAACTTATTTATATCTAGTAGTGCATCATAGTTTCCTAGAACTAAAACATGGACTACCCCATAAACCATTTTTGAGTCTCACATAGTACAGTGCTCATAGAAACTTACTAATAATAATTTTAACCTAATGAAAGATATAACATTATTTGACAATTGGACAAAATTATAAGCTTGTTGAGAAGATTATGTACATTATTGTGAATGCAAGGTGTTAATCCTTTTTAATACTTTCTCTTAATTTTTATTAAGTTTTGAAATATTTCTAGTAGCGGAGAATATGGTTTCGTAGAAGGAAGTTTTTGTTCCTTTTGCAGTAATCTACCTAGGATTGTATTTTCTATACATCTCGCTTTGCCGTAACACAGTAGGAAAAGAAATAAGTTATAAATAAATTTTTGCTGAGTTTCTAGAAAATTTATAAAAAAAAGTTAAAAAAGTATGTTTAGCATTTTTCAAATGGAATGTATTTTTGTCTCTCTTTCTTTATATATATATATATATATATATATATATATATATATATATATATATATGTTCTAAATTAATTAGCTCATCGTATTTATGTTCGGATGTATATTAGTCATTATTGAAAATGTGTTAGTGTTGAAATTATTTCATTAATATTGTTATTGTTAGAATCTGTCAATTTCTGATTTTTAAAAGAATCATATATTGTTTTCTTCCTTCAAGTTTAATCATGTTTATTTGAGTATCTTTTGGAAGTACCTTTGTTTGTACAAAATTCTTGCTTGTACATTTTCTAGAAGTTTGTTTAAAGTTACCGTGTTGATACTTCTATTATGTTTTCCTTAATTAGTCTTAATCTTACTCGGGATCCTCACCTTCTTTTATCCATAATTACTAAATTAGTTAGAAAATGCGACATTATTATAATTATATTATCGAGAGAGAGAATTACGCATTTCATTTATAAATAATTTTATCATTCTCTATTTTTCTATTTGAAGAAAAAAGTTGTATGAAAAGGAAATTCTTATTATTTTTACATGAAAAGGGAAGATCTTAAAGAAAAAGATCGATGATATCATTTGTTTCAATTTTATTTTCTTCATCATATTTATATATATTTTTTGTTTGCTAGAAAATAAAATGATAATTTATTCAATGAGTTATTTTTGTTACACATAAAGGTGGTGAGCTTGCAAGCAGAACTCTCATACCTACAAGGCCACCTTGCCCAGATGGAGGGACCTCATCCACCACCACCTCCTCCATCTCAATCGGCGACGGCACTGCGATTCTCAATGGCTGATTTACCATCGGCGGCCACCGGAGCTGTGGCGCCGGCCACCACCTATGACTTGTCTTCACTTTTTGATACGTCGGGGCAAATTTCATGGGCCATGCAACAAAGGGCATTTGACCCACGTCAATACGTGGCAGCTCCTCCATCAAGTTCTACTAGGGCTAACGTGGAAGCAGTGGCACGTGACCTTCCTCGTAGGCATGGCTCTCCTCCATCACCTCCTGCATCAAGCTGCAACGCTTCACCATCTCTGTCTCTTTCCAAATGA