Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13679 LG3 32525209 32528268 PREDICTED: protein SCARECROW-like isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
T/C 32525348 missense_variant p.Leu47Pro
G/T 32525354 missense_variant p.Gly49Val
G/A 32525497 missense_variant p.Ala97Thr
A/G 32525541 synonymous_variant p.Thr111Thr
T/A 32525610 missense_variant p.Phe134Leu
T/C 32526087 synonymous_variant p.Ile293Ile
G/A 32526100 missense_variant p.Glu298Lys
A/G 32526269 missense_variant p.Asn354Ser
C/T 32526285 synonymous_variant p.Asp359Asp
A/G 32526380 missense_variant p.Asn391Ser
T/C 32526417 synonymous_variant p.Val403Val
G/A 32526561 synonymous_variant p.Lys451Lys
T/C 32526627 synonymous_variant p.Ala473Ala
G/T 32527248 downstream_gene_variant
G/A 32527250 downstream_gene_variant
T/A 32527251 downstream_gene_variant
A/T 32527255 downstream_gene_variant
G/T 32527323 downstream_gene_variant
A/T 32527461 downstream_gene_variant
T/G 32527586 downstream_gene_variant
G/T 32527590 downstream_gene_variant
C/T 32527777 downstream_gene_variant
G/A 32527863 missense_variant p.Arg695His
T/C 32527878 missense_variant p.Leu700Ser
C/T 32528032 synonymous_variant p.Ser751Ser
C/T 32528033 stop_gained p.Gln752*
C/G 32528041 missense_variant p.Phe754Leu
A/G 32528042 missense_variant p.Thr755Ala
T/C 32528103 missense_variant p.Leu775Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13679.1
MAACALFSAATNITEDGNVNNATASAASPLTSASNSSNMSNDDQHTLHGIVPQPHCERKIVRKRMASEMDHLNVHLTPPHNSSSTTDYPRFPRRSSANVNMSSLEKGSTTTPTLAAGTCSNNGNNNNTSNNYHFNNSNHNSRSGSISSRDNVGIPNYPTVAVTTNYSTMLLPSSTTINSSGVAPNYSAHQHHHFQGLVESQSQDQQNPVPAVCGFSGLPLFPSQSQRNRDNNNMNNTATTNLRTSGGNIVDVVASSSSSPSMDDTSAATSGWIDGILKDLIHSSNSVSIPQLISNVREIIYPCNPNLATILEYRLRLLTESAPQNKRGTEGVPLPPSVSSVKLVNNRVDGIVPNLHFTDGSGGPVVVNQHMLSNWGVPPITHHHDSNANNNSNTNNNPSVSLVTLPSPPPPPHYSPPQEKQPHPQEEDLAATSSAEVALTRKKKEELREQKKKDEEGLHLLTLLLQCAEAVSAENLEDANKMLLEISQLSTPFGTSAQRVAAYFSEAISARLVSSCLGIYATLPHTHQSHKVASAFQVFNGISPFVKFSHFTANQAIQEAFEREERVHIIDLDIMQGLQWPGLFYILASRPGGAPYVRLTGLGTSMEALEATGKRLSDFANKLGLPFEFFPVAEKVGNLDPERLNVSKTEAVAVHWLQHSLYDVTGSDTNTLWLLQRLAPKVVTVVEQDLSNSGSFLGRFVEAIHYYSALFDSLGSSYGEESEERHVVEQQLLSREIRNVLAVGGPSRTGEPKFHNWREKFQQCGFRGISLAGNAATQASLLLGMFPSEGYTLVEDNGILKLGWKDLCLLTASAWRPPFHSGTAITHHN*


CDS Sequence:
>Vu_13679.1
ATGGCTGCTTGTGCTTTGTTCAGTGCTGCCACTAACATTACCGAAGATGGGAATGTTAACAACGCAACTGCAAGTGCTGCTAGTCCTCTCACCAGTGCTTCTAACTCCAGCAACATGAGCAACGACGACCAACACACCCTACATGGCATCGTGCCACAGCCTCATTGTGAGAGGAAAATCGTCAGGAAAAGAATGGCTTCTGAGATGGACCATCTTAACGTTCATCTCACTCCACCACACAACTCTTCTTCCACCACTGATTATCCTAGGTTTCCTCGTCGAAGCTCCGCCAACGTCAACATGTCATCCTTAGAAAAAGGGTCCACCACCACACCTACGTTAGCCGCAGGTACTTGTAGTAATAATGGCAATAATAATAATACTAGTAATAACTATCATTTTAATAATAGCAACCATAATAGTAGAAGTGGTAGTATTTCGTCAAGAGATAACGTTGGCATTCCAAATTACCCCACTGTGGCCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTGGTGTTGCTCCAAACTACAGTGCTCACCAACACCATCATTTCCAAGGGCTTGTTGAAAGTCAAAGCCAGGACCAGCAGAACCCCGTGCCTGCAGTGTGTGGATTCTCGGGATTACCACTTTTTCCATCTCAAAGCCAAAGGAACCGAGACAACAACAACATGAACAACACCGCCACCACCAACCTAAGAACCAGTGGTGGAAATATTGTCGACGTGGTTGCTTCTTCTTCTTCTTCTCCTTCCATGGACGACACTTCGGCCGCCACGAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCAAACAGTGTTTCGATTCCCCAACTAATTAGCAACGTGAGGGAGATTATATACCCTTGCAACCCCAACCTTGCAACGATTCTTGAATACAGGTTGCGTCTTCTCACTGAGTCCGCCCCACAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCACCTTCTGTGTCCTCAGTGAAGCTCGTGAATAATCGTGTGGATGGCATTGTTCCTAATCTGCACTTCACAGACGGATCAGGTGGTCCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCCAATCACTCACCACCACGATAGCAACGCCAACAACAACAGCAACACCAACAATAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCGCCACCACCACCCCATTATTCACCGCCACAAGAGAAGCAGCCTCACCCTCAAGAGGAAGATCTAGCAGCAACCAGCAGTGCTGAGGTGGCACTCACAAGAAAGAAGAAAGAAGAGTTGCGGGAACAGAAGAAGAAAGACGAGGAGGGTCTGCATCTCCTCACTTTGCTGCTGCAGTGTGCAGAAGCTGTTTCAGCTGAGAATCTAGAAGACGCCAACAAGATGTTGCTAGAGATTTCCCAATTATCAACACCGTTTGGCACATCAGCACAGCGTGTGGCCGCTTATTTCTCGGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTTTGGGGATATATGCCACTTTGCCACACACCCATCAAAGCCACAAGGTGGCATCGGCTTTCCAAGTGTTCAACGGAATCAGTCCTTTCGTGAAGTTCTCACATTTCACAGCAAACCAAGCTATCCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTGGACATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTCTACATTCTAGCTTCAAGACCTGGTGGAGCCCCTTATGTGAGGCTCACGGGGCTTGGTACTTCCATGGAAGCACTTGAAGCCACGGGTAAACGTTTGTCCGATTTTGCAAACAAACTTGGTCTTCCCTTTGAGTTCTTCCCGGTGGCTGAGAAAGTAGGGAACCTTGACCCTGAGAGGCTCAACGTTAGCAAAACCGAAGCTGTTGCAGTTCACTGGTTGCAACATTCCCTCTATGATGTCACCGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGCTGGCACCTAAAGTGGTGACTGTGGTAGAGCAAGACCTAAGCAACAGTGGTTCGTTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCGGCGTTGTTTGACTCTCTTGGGTCTAGCTATGGGGAGGAGAGCGAAGAGAGGCATGTGGTGGAACAACAGCTATTGTCTAGGGAGATTCGAAATGTGCTAGCTGTTGGAGGGCCATCAAGAACTGGGGAGCCAAAGTTTCACAACTGGAGGGAGAAGTTTCAGCAGTGTGGATTTAGAGGTATATCTCTAGCTGGTAATGCTGCAACTCAAGCTAGTCTACTCCTTGGTATGTTCCCATCAGAGGGTTATACCTTGGTGGAGGACAATGGCATCCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCATTCCATAGTGGCACTGCCATTACACATCACAACTAG


Promoter Sequence:
>Vu_13679::LG3:32523209-32525209(+)
AATGATTACAGTTAAAATGGCAGACTTACTATTGAATTCTTACTAATATATTTAGCCTTGTTGGAATATGTTGAAAATGAAGGAAAGAGGACGAAAGAAAGAAAAAAAAAATTTGAGTTTACACAGAGAAATGATTGAAATCTTTCTAAAAAATATGCAAAAGAGATTTAATATAAATTATAAGTTAATCCATAAAAAAAAATACTAAACATTCGGATAATAAACTTATATTTTTATATTTTGGTTTTCTTGTCTACTTGTATTTAATATTATGAGACCCCGTTCGTGTAATAAGAAATATTATATCCTGAACTTACAAATCTTTTTTATATTTTCTTAAACTATTTCTACTTCTTCTCACACAGTACAAATACTAGAATTTTTCACCCAAATAACGCATTTTGATCTAAAAATTACTTATATAGGATATTGCATTAATTATTTAGGTAGATAGTGATTTTTTTTTTAAGTCAGTATTGGAAAACCAAATTTAAATTGTTATTTTTTGTACTTTATTTTTTAAACCTTTTTTTCAATAATAAAAAAAATAAAAATCTAATTCAGATGAAATCGAATTTAAATTTATTTTCAACAAATTTTGTTTTAATCACGGTTTTCCAAAAATCAGTTTTGAACTTCAAAAAATCACTATGCATATAAATATTTGACATTTAGGGTATGTGTGGCATTTGAACGAAAAATTGACCAATAATGGCATTTCTAGATTCTAATTTTGAAAATTTGTTTGGGTTCTTCAATTTACCTTTTGTGAAGGAAACAAAGAGAGAAAAATTGAAAAATTTAGAGGAAGAAGTGGCGCTATTCTGAGGTTCCTTTTAGGTCATTGATTTAGGTGCCAGCTTTTGAGTAATGTGTCCGTTGCAGTGGTTGGTTTGACAAATTTGTTAATGGCAGAAAAAAAAAGGAAAATGTGAATTAAAAAAATGAATTTTGGGATGAAGTCAAGAGGAAAAAGCTGGTTAGTGATGCCGCAGTCGAAAGCAAAATGTCAAACGCTACGATTCAGATTTTTGGGAACTGAGGTTTGACAGCTCTTTCTCTGCTCCTCGTTCTTAGCGACACTATCTATATCCCTTTTTTAATCCCTAACACCTTCAATCATTCATCTTCCACTTTACCCATTTTACGATTCAAGTTTTTAATCTTCAACAACATTGCTTCAAAAGGGTACTTTTAAATTCTGCAAAATGAACTGAAAATCGTGTATTTATTTAAAGTAAAGTTGCTTCGTTTATAATGAAATTACAGCATAAGGGTAAAAGTTGCGAAAATGGTTGGTTTATTTATGCAGCTGCACGTTGTAAATGTAAAACTGGGTTAGGAAGAAGACGACGAAAACTCAGTTAAAAATATCTTCATCTGTCCTGAGCTTGCTTTAATTTCCATCACAAACCAGAACAGTTCACAGCTCAGAGCAAGCAATGACACTACCTACCACAGTTCCTTCTTCTTTCTTGTTTCTTCTTTCTTTCTCGTTTCTTCTTTCTTTCTCTAGCTACCTATTGTTTAACATATCATATGCTATCCTATGCTATGTCTGAGACACGTTCACATTAATCTGAAACAAAACTAACATATGCTTAGCAACATATAAATAAAATCAAAGCACACAAAGACGAAGCACTAACCGCCGTGGCTAGTGTTATCCCTCCCAAACACACCCTTCTTTTGCAACCATCCAAAAGCCAAAAGGCATAGAGAATCGTGTTGGAGAGAGGTGGGAAAATGGGAATCCTATACCCACTGTCCAAATCTTCACAACGTTATCTCCTTGTAGCTTTGGCCATCCCATAATGCCATAACATAACCCCTCTTACAAATGGGAATTATTTGACTGGCAAAACAAGCAAACACACACGTACACACTCCACAACAACCTCAGTTTTTTCCCACTTCTCCTTTCTTCTCTTTCCATGATCTGAACAACACCCCCATCATATCTTTTTTTGCTTCTAGATCTCACTTTCTACATCCCCTTA


Gene Sequence:
>Vu_13679(+)
ATGGCTGCTTGTGCTTTGTTCAGTGCTGCCACTAACATTACCGAAGATGGGAATGTTAACAACGCAACTGCAAGTGCTGCTAGTCCTCTCACCAGTGCTTCTAACTCCAGCAACATGAGCAACGACGACCAACACACCCTACATGGCATCGTGCCACAGCCTCATTGTGAGAGGAAAATCGTCAGGAAAAGAATGGCTTCTGAGATGGACCATCTTAACGTTCATCTCACTCCACCACACAACTCTTCTTCCACCACTGATTATCCTAGGTTTCCTCGTCGAAGCTCCGCCAACGTCAACATGTCATCCTTAGAAAAAGGGTCCACCACCACACCTACGTTAGCCGCAGGTACTTGTAGTAATAATGGCAATAATAATAATACTAGTAATAACTATCATTTTAATAATAGCAACCATAATAGTAGAAGTGGTAGTATTTCGTCAAGAGATAACGTTGGCATTCCAAATTACCCCACTGTGGCCGTCACAACCAACTACTCCACTATGTTGCTACCTTCTTCCACCACCATCAATTCCTCTGGTGTTGCTCCAAACTACAGTGCTCACCAACACCATCATTTCCAAGGGCTTGTTGAAAGTCAAAGCCAGGACCAGCAGAACCCCGTGCCTGCAGTGTGTGGATTCTCGGGATTACCACTTTTTCCATCTCAAAGCCAAAGGAACCGAGACAACAACAACATGAACAACACCGCCACCACCAACCTAAGAACCAGTGGTGGAAATATTGTCGACGTGGTTGCTTCTTCTTCTTCTTCTCCTTCCATGGACGACACTTCGGCCGCCACGAGTGGTTGGATCGATGGTATATTGAAGGATCTCATTCACAGTTCAAACAGTGTTTCGATTCCCCAACTAATTAGCAACGTGAGGGAGATTATATACCCTTGCAACCCCAACCTTGCAACGATTCTTGAATACAGGTTGCGTCTTCTCACTGAGTCCGCCCCACAAAACAAAAGAGGCACAGAAGGGGTGCCTCTTCCACCTTCTGTGTCCTCAGTGAAGCTCGTGAATAATCGTGTGGATGGCATTGTTCCTAATCTGCACTTCACAGACGGATCAGGTGGTCCTGTGGTTGTGAATCAGCACATGTTGTCCAATTGGGGTGTGCCTCCAATCACTCACCACCACGATAGCAACGCCAACAACAACAGCAACACCAACAATAACCCTTCAGTTTCTTTGGTTACTTTGCCTTCACCGCCACCACCACCCCATTATTCACCGCCACAAGAGAAGCAGCCTCACCCTCAAGAGGAAGATCTAGCAGCAACCAGCAGTGCTGAGGTGGCACTCACAAGAAAGAAGAAAGAAGAGTTGCGGGAACAGAAGAAGAAAGACGAGGAGGGTCTGCATCTCCTCACTTTGCTGCTGCAGTGTGCAGAAGCTGTTTCAGCTGAGAATCTAGAAGACGCCAACAAGATGTTGCTAGAGATTTCCCAATTATCAACACCGTTTGGCACATCAGCACAGCGTGTGGCCGCTTATTTCTCGGAAGCCATATCAGCAAGGTTGGTGAGTTCATGTTTGGGGATATATGCCACTTTGCCACACACCCATCAAAGCCACAAGGTGGCATCGGCTTTCCAAGTGTTCAACGGAATCAGTCCTTTCGTGAAGTTCTCACATTTCACAGCAAACCAAGCTATCCAAGAAGCTTTTGAAAGGGAAGAGAGGGTGCACATCATAGATCTGGACATAATGCAAGGGTTGCAGTGGCCTGGTTTGTTCTACATTCTAGCTTCAAGACCTGGTGGAGCCCCTTATGTGAGGCTCACGGGGCTTGGTACTTCCATGGAAGCACTTGAAGCCACGGGTAAACGTTTGTCCGATTTTGCAAACAAACTTGGTCTTCCCTTTGAGTTCTTCCCGGTGGCTGAGAAAGTAGGGAACCTTGACCCTGAGAGGCTCAACGTTAGCAAAACCGAAGCTGTTGCAGTTCACTGGTTGCAACATTCCCTCTATGATGTCACCGGCTCAGACACCAACACCTTGTGGCTCTTGCAGAGGTGGGTGAAGGGTTTTACTCCATTCATTCATTCGATGCATTGCATGGGTTTATGTTACTTCTTGCGTAATTTGCATGATCCGGAGGGAGTTGAAATAAGCTGAGTGGGGTTAGTACATAGGAAACTAGTCATGGTACTTTTCAAGAAAGAAGTCCCCAAAATCCCTTTTTCACCTTTATAGGCTCTAGTACTCACTTTATGTCTCTGCCCTTTTCTTTTCTAAGGAAGATCGGGAATAATGATTATGTCTAGTTTTGAATTACTCTCTGCACATATCTTAATGGGGGAGAAACAAAAAAAAAAAAGGTAAGAAGAGAACTGTAGAGTGTATATATATATATAATAAGTTTTGAAAGAAGGGGTGATGGGTCTAGTGTGTTTATTATTACTTACATTGTCGCTATGTAGTTTCTGGAGTTTGAAGGCCAGATAGTGGAAAGATCAAGAAAAAGCTATTACTTTTAAGTACCTATCGTAAAAGTTACTGGATATAGTAATTCTGAATTGAACTTGTCTGCAAATGTAAAGACACTTTACACTGCATTTGTTGCATGGACTTGTGTAATGCAGGCTGGCACCTAAAGTGGTGACTGTGGTAGAGCAAGACCTAAGCAACAGTGGTTCGTTCTTGGGGAGGTTTGTGGAAGCCATACACTACTACTCGGCGTTGTTTGACTCTCTTGGGTCTAGCTATGGGGAGGAGAGCGAAGAGAGGCATGTGGTGGAACAACAGCTATTGTCTAGGGAGATTCGAAATGTGCTAGCTGTTGGAGGGCCATCAAGAACTGGGGAGCCAAAGTTTCACAACTGGAGGGAGAAGTTTCAGCAGTGTGGATTTAGAGGTATATCTCTAGCTGGTAATGCTGCAACTCAAGCTAGTCTACTCCTTGGTATGTTCCCATCAGAGGGTTATACCTTGGTGGAGGACAATGGCATCCTTAAACTTGGTTGGAAGGACCTTTGCTTGCTCACTGCTTCAGCTTGGAGACCTCCATTCCATAGTGGCACTGCCATTACACATCACAACTAG