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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13606 LG3 31544141 31546745 hypothetical protein LR48
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Annotations  
category   relationship type   keyword
Biological Process   involved in   protein phosphorylation, protein phosphorylation, signal transduction, protein phosphorylation, protein phosphorylation, protein phosphorylation, protein phosphorylation
Cellular Component   is active in   cytoplasm
Cellular Component   located in   cytoplasm, cytoplasm
Molecular Function   enables   protein kinase activity, protein kinase activity, protein serine/threonine/tyrosine kinase activity, protein kinase activity, protein serine/threonine/tyrosine kinase activity, protein serine/threonine/tyrosine kinase activity
SNP Position Effect Amino acid change
A/T 31544342 intron_variant
A/T 31544552 intron_variant
T/C 31544565 intron_variant
A/T 31544574 intron_variant
A/T 31544577 intron_variant
T/A 31544584 intron_variant
A/T 31544590 intron_variant
G/A 31545563 intron_variant
G/A 31545697 intron_variant
C/G 31545903 intron_variant
G/A 31545937 intron_variant
A/T 31546256 intron_variant
C/T 31546285 intron_variant
A/G 31546517 missense_variant p.Asn259Asp

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13606.1
MRFHNTKKHIIGYRDQIVAIKVLHRGSTSEERVSLENRFAREVNMMSRVHHDNLVKFIGACKDPLMVIVTELLPGMSLRKYLMSIRPERLDLHLAINFALDIARALDWLHANGIIHRDLKPVPAFLVCDICCGIEFLLRLIECSSNIIIPELYSTVTLRQGEKKHYNNKVDVYSFGVVLWELLTNRMPFEGMSNLQAAYAAAFKQERPSIPGDISPELAFVIQSCWVEDPNLRPSFSQIIRMLNAFLFTLSPPSPPLPVPNNEPEVATTSNGTITEFSARNKGRSKELPFHGIYNFSKFMSDPLK*


CDS Sequence:
>Vu_13606.1
ATGAGGTTCCACAACACCAAGAAGCACATCATTGGGTACAGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGTTTCCCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGTTTATTGGAGCATGTAAGGATCCACTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCACTGCGTAAATATTTAATGAGTATCCGTCCTGAACGATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCATTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTAAAACCTGTCCCTGCATTTCTTGTATGTGACATTTGCTGTGGCATAGAGTTTCTTCTTAGATTGATTGAGTGCTCTTCCAATATTATTATCCCAGAACTGTACAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAGTTGTTCTATGGGAGCTACTAACAAACCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGCAAGAGAGGCCGAGCATACCAGGTGATATATCCCCTGAGCTTGCTTTTGTGATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCGAGTTTTAGTCAGATCATTCGCATGCTCAATGCATTTCTCTTCACTCTCTCACCACCATCTCCTCCTTTGCCAGTACCTAACAATGAACCTGAGGTGGCTACAACCAGCAATGGCACCATTACTGAGTTCTCTGCCCGAAACAAAGGAAGATCAAAAGAGTTGCCATTCCATGGTATATACAATTTTAGTAAATTTATGAGTGACCCTCTAAAGTGA


Promoter Sequence:
>Vu_13606::LG3:31542141-31544141(+)
TTTTATCATTTTAACAAAAAATATAACTTGATAAAGAGTAAATAAAAAACCAAGTTGAATAATTAAGACGAAAATAAGGAGAATTTTATTTTAACCTATAATAGGTTGGGAAAGTGGAATATTTAAGAAACTCATTGTATGTTTTATTTATTATTATTTATATATTTTATTTATTTATTATTATTTATAAATATTTTTATTTTTCCTTAATTAATCAATTTTAACTTCTATTTTAGTTTTCTATATGTTTTCTTTTTAGTAACGGTATTTTAATTCAATTATTTCCTTCATTGATACCAAAAAAAACATTACAAAAATACTTAAAAGAGAATTAAAGTTTCCTCATGTATTTTAAATGATAATTGCATCTTTTATGTTTCTAATTTAATAACATTAATAATATTTTTAATTTTAAAATAAACATTTACGTTACTTATATAGCATGCATGTCTAAAACATCATCCACCAACGACAATGTCCTAACATCTGAACTGCCACATCCGCCAAAATTTTCCAATTTTCCTCCATGTCCTCCACGTGTCTCTCTTGCATTGGTTCCTCTTTTATTTTCTTTTCTTTTTTCTTTATTTCCTCTCTCTTCACGCCCACCACCACACATACTTTCTCTCTCCTTCCACTTTTTAGTCTTCTCTCTCGTCGGAACAGATACGCTGAATATCTTCTCCTTCTTCCACTCTCTCTAATCTTTCTTTTTGTCTCAGCAGAACACCCCATTTCTAGAGAGAGAAAATTCACCCATGTCTTTTCCAAAAGCATCAACTTGAGAAGTGTGAGAGTCAGAGTGGGTGGTTTTCACTTTTCATTGGTTTCAACTTTCAACTCTCTCTTGCCTCTCCCACTTTTCTATGGTGTTATTTTTCTAGCAAATATTATTATTTTAAGCCCATCTTCCGGTAAGTTGCTTTTCGTTCTTTTCTTCTCTTTGTTTTGTTCTGTTTCTTCTTCTTCTTATCTTGTTTCTCTTTTACCTTTTTATTTTCTTTGGCCGAACTGCACCTACAGGTCAGCTTCTAACTGAAGAGTAAACAAGGGATATGATATACTTTTTGGGGTGGGAGAAGGAAGAAGATAGTTATTGATTTTTTTCAGGGTCACGTGAGAGGAAAAAATTGTGTTTTTATTTTTCTTATTTTGGAGTTTTGGTGGTTTTTGATGAGGTGGGTTTAAAGATTGAAGAGGCTGTGCGGGGAAGGGAATATTAGCACCCAGTGGAATTGGGGTTGATGTTTACCATGGAGACATGTTTGTTTAGAAAGGAAGATTCTGGGACTGCTGGTTTTGTTCTGTACTTCTTGGATTAAAAGAGTTGTTTCTTTTATGAGTTTTGAAAAAAAATAAAATTCGTGGGGATAACGATTAAAATGAGGAATTCAGGTATAGTTTAAAGTCCCATCATGAGTTTCCGAGAGGGAAAGTTAGGAGAAGAGAAGGAATGTGAAGAATCGGTGTTGGGGAGCACTGAATCCAAATCAGTGAGGGAAAATGGATCATTGGCAGCCACACAGTTTACAATTGATGAGAATTTATTGGTTGACCCTAAACTACTCTTTATAGGGTCCAAGATTGGTGAAGGAGCTCATGGGAAAGTATATGAAGGAAGGTCAGTGGCTAAACCTTGGATGTGAATATCGTGTTTTGTAATTTGTATATCATGCCTTAATTTCGTTATTTTCTTTAAAAATTGTCTGAGAAGCCATGTCAGATCATACAGTCTTGGGATATTTATCTACACTTTAGTTTTCATAATTGTGTATATTTTTGTCCCATTAGCTGGCGGAATCATTGTTTTTGCTTTTCTGTTGTGCTTAAGTGCTAAGGAAGAAGTCAAATGTTTGCTGTGGTGTTTCAGCTAAATCACTTTTTTTTACTTTTGTCGTTGAGTAAATAAGAACCGAGCCTTTGTTGGTTCAAGCAGTAAATAACTACCTGTCACAAATTTCACCTACAAAGTTGCGTTTATCCCTTATACTGATTTGACA


Gene Sequence:
>Vu_13606(+)
ATGAGGTTCCACAACACCAAGAAGCACATCATTGGGTTGGTATTGATTTGATTTTTCTTAAGAACAATTGATTTCTTGCTCTTGTTATAGAGTGTTGGATTTTTCTTTGTTGTGATGGTTTAACCGTTGCTAGTTATTAGAGTACTTGTTCAACACTATGCTTGTGTGTGTGCAACAAGTGATTTGCTGGAAGTTGGAGTTATGGTTTATGTGGGTTTAGATTAATACTTTTCCAGGTACAGAGATCAAATTGTGGCAATCAAAGTTCTGCATCGTGGGAGCACTTCTGAAGAAAGAGTTTCCCTTGAAAATCGTTTTGCTCGAGAAGTTAATATGATGTCTCGTGTCCACCACGACAATCTTGTTAAGGTCAGTTCCATTGTAGCAAAATTATCTTTAGTATTTCTGTGTAGTTCTGTTTTTTTGAAGCCTTAACAATTATGTTAAGTATTGCAGTTTATTTTCCTTCGTGTGCTAGTATAATTGATGGTTTCCTCTTATGTAAGATAACAATATAAGCATGTATTGTTCCCTCGTTATTATTGTTTTGCAGTTTATTGGAGCATGTAAGGATCCACTTATGGTAATAGTCACAGAGCTATTACCAGGGATGTCACTGCGTAAATATTTAATGAGTATCCGTCCTGAACGATTAGACCTTCATTTGGCTATCAACTTTGCTCTTGATATTGCTCGAGCATTGGATTGGCTACATGCTAATGGGATCATACACAGAGATCTAAAACCTGGTATCAACTTAGGCACTTTTTTTTTTTTTTAATTTTCTTCTCCTATAAGTGTTTCTGAAGAAGATTATCCTAGTAGGGTCTTACTTTCGTCAAAATTATCTTTGCTACATTCTCTTCAATTAATGCCATATTAAAGCATACCTTAGCCAGTAATTCTTTGTTGGAACTTGACTCTTACGGAAAATGGTGGTAGTTTTTGACATGGATGTCATAGTTTGAGATCTGAGTATATATTGATGACTCTAGTATTATAACGTGTATGCTTACTCAACTATATTTTTGAAATTGTCACAATGCAGACAATCTGTTGCTTACAGCGGACCAGAAGTCTGTTAAACTTGCTGATTTTGGCCTCGCAAGAGAAGAAACTGTGACTGAAATGATGACTGCAGAAACAGGAACTTACCGTTGGATGGCACCAGAGGTATGTTATTATCTTGGATTATGATGATATCTTTTATTCTCCCGATTCAAGATGCCACCATTAACATAAAATGACAATTGTTGCACTGACATAAGATTAATGAGAGACTCAATCGAAACCATCAAATTGCAGTAGAGACTGAATTTAAAACTAAAACCAGCAATGATGTACACTTTAATTTCAGAATGGTGGACAAATTATTTCTTCAGCATCAAACTGATTGATATTACGCAGTCTTGCTTATATTGCGTAACCGCTGCGTTGCTTGTTTCTGTGTAGTCCCTGCATTTCTTGTATGTGACATTTGCTGTGGCATAGAGTTTCTTCTTAGATTGATTGAGTGCTCTTCCAATATTATTATCCCAGAAGTACTATATGTGTGTGTGTGTGTGTGTATACATCTAAATTTCTACTTATGAAAAGGCATAGTTTACACATATCATCAAGTGGACTTTCATTGTTTTTCTGAGCAGCTAAGATCCATTAATAAATTCCATTTTTCTGAATAGCCAAAAGGGATGTAGTAAATTCTCCCAGTCTCCTGTAATTTGTTTAGTACAGTAATGCACAAATTTAGGACCCTTTAAGGCACCAAAATTGCCCATTAAGAATGTATTGCTATAGTTTTCTGACAATGTAGGCTTTGTATAAATGAAGCTTGTTTTGACAACTTATACCAATTTTGCAGCTGTACAGTACTGTGACTTTGCGTCAGGGAGAGAAAAAGCACTACAACAACAAGGTTGATGTATATAGCTTTGGAGTTGTTCTATGGGAGCTACTAACAAACCGCATGCCATTTGAAGGGATGTCCAATTTACAGGCTGCTTATGCTGCTGCATTTAAGGTATTAAATTTGATATCACTCTGTCCTTATCATCAAATTTGATATCACTCTGTCCTTATCATCAAATATCATGCATACTCAAGGTTGATATATTAATTTGTTAGCTTCCAAAAGCTACCTTTTTCTTGAGAATAATTTGATATGTTACTATTTGCTAATCATGAAATGGTTTGCTTTTGAGATTGCAGCAAGAGAGGCCGAGCATACCAGGTGATATATCCCCTGAGCTTGCTTTTGTGATACAATCATGCTGGGTTGAAGATCCTAACTTGAGACCGAGTTTTAGTCAGATCATTCGCATGCTCAATGCATTTCTCTTCACTCTCTCACCACCATCTCCTCCTTTGCCAGTACCTAACAATGAACCTGAGGTGGCTACAACCAGCAATGGCACCATTACTGAGTTCTCTGCCCGAAACAAAGGAAGGTTTGGCTTTCTTCGCCAATTGTTTTCTTCAAAGAGGACCAAAAACTAACTTTTTAAGTGCTAAATTTTTTAAAATACCCTTTTGTTCTAGATCAAAAGAGTTGCCATTCCATGGTATATACAATTTTAGTAAATTTATGAGTGACCCTCTAAAGTGA

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