Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13603 LG3 31467135 31471098 PREDICTED: probable serine/threonine-protein kinase WNK5
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   photoperiodism, flowering, protein phosphorylation, protein phosphorylation, photoperiodism, flowering, protein phosphorylation, photoperiodism, flowering, protein phosphorylation, photoperiodism, flowering, photoperiodism, flowering, protein phosphorylation, intracellular signal transduction, protein phosphorylation
Cellular Component   is active in   cytoplasm
Cellular Component   located in   plasma membrane, plasma membrane
Molecular Function   enables   protein serine/threonine kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein histidine kinase binding, protein binding, protein kinase activity, protein kinase activity, protein binding, protein serine/threonine kinase activity
Pathway   B 09181 Protein families: metabolism   C 01001 Protein kinases [BR:ko01001]
SNP Position Effect Amino acid change
C/G 31467324 3_prime_UTR_variant
G/T 31467342 3_prime_UTR_variant
T/C 31467574 synonymous_variant p.Arg556Arg
C/T 31467580 synonymous_variant p.Gly554Gly
A/C 31467712 synonymous_variant p.Pro510Pro
G/A 31467836 upstream_gene_variant
C/T 31468105 missense_variant p.Arg416Lys
G/A 31468323 upstream_gene_variant
A/C 31468431 upstream_gene_variant
G/T 31468631 missense_variant p.Pro326His
A/T 31468885 upstream_gene_variant
G/A 31468894 upstream_gene_variant
A/T 31469069 synonymous_variant p.Ala209Ala
C/A 31469098 upstream_gene_variant
G/A 31469332 synonymous_variant p.Gly176Gly
A/G 31469632 synonymous_variant p.Asp108Asp
C/G 31469898 upstream_gene_variant
A/G 31469900 upstream_gene_variant
T/C 31469903 upstream_gene_variant
T/G 31469906 upstream_gene_variant
A/G 31469907 upstream_gene_variant
C/G 31470057 upstream_gene_variant
G/T 31470101 upstream_gene_variant
C/T 31470112 upstream_gene_variant
A/G 31470215 upstream_gene_variant
G/A 31470244 upstream_gene_variant
G/T 31470632 5_prime_UTR_variant
C/A 31470633 5_prime_UTR_variant
G/C 31470658 5_prime_UTR_variant
T/A,* 31470800 5_prime_UTR_premature_start_codon_gain_variant
A/T 31470840 5_prime_UTR_variant
A/T 31471059 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13603.1
MELPDTVSTAMYKGRFCTSGGVKSQLGYVETDPSGRYGRFRDVLGKGAMKTVYRAFDELLGIEVAWNQVKLGDVFHSPEQLQRLYSEVHLLKHLNHDSMMIFYGSWIDVNNRTFNFITELFTSGTLREYRQKYKRVDIRAVKIWARQILSGLEYLHSHNPPVIHRDLKCDNIFVNGHQGRVKIGDLGLAAILRSSQHAHSVIGTPEFMAPELYEEKYNELVDIYSFGMCMIELLTFEFPYSECANPAQIYKKVTSGKLPNAFYRIPDLEAQKFVGKCLSNVSDRPSATELLLDPFLAVDQLEIPLPPNIPLFPNHTLQLNSAPLVPIEHHHDQTKSAEMTITGSINEENNTVFLKVRISDITGHTRHVFFPFDTLKDTAIQVAMEMVQELEISHLEPLEIAAMIDHEVSALVPSWRDRVKCHHQRQHSFNYEEDEDINNHHPFFLSSSPSSPRGSGHMSASNSFKTHVRGNHYPFAQEGYQDDMFMNNDDASSQASMNSFKCSTFQFCDPGHEDEHDGTERNKCTTLSCCGGEEGEPRLANPVLNPPRMECSCGCRFGSGHGCPRLTRIRSCPHERRSLQLQRSMMLEEIYKYKRRFFNTIGAVENIGFRHPLRGGVCFPRV*


CDS Sequence:
>Vu_13603.1
ATGGAATTGCCTGATACAGTCAGTACAGCCATGTACAAGGGGAGATTCTGCACTAGTGGTGGAGTTAAGTCTCAGCTTGGATATGTTGAAACTGATCCATCTGGTCGATATGGCCGTTTCAGGGATGTTCTTGGCAAAGGAGCAATGAAGACTGTGTATAGGGCATTTGATGAGTTACTGGGGATTGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTCTTTCACTCACCAGAACAACTTCAGCGCCTTTATTCAGAGGTTCATCTCCTGAAGCACCTCAACCATGACTCTATGATGATCTTCTATGGTTCTTGGATCGATGTCAACAACAGAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGTACACTTAGAGAGTACAGGCAAAAGTATAAGCGAGTAGATATCCGAGCAGTTAAGATTTGGGCTCGCCAGATTCTTAGTGGCTTGGAGTATTTACACAGCCATAATCCTCCTGTAATACATAGAGATCTCAAGTGTGACAACATCTTTGTCAATGGCCATCAGGGGAGGGTCAAGATTGGAGACTTAGGCCTAGCAGCTATACTTCGTAGTTCTCAACATGCCCACAGTGTCATAGGCACACCAGAATTCATGGCTCCAGAACTGTATGAAGAGAAATATAACGAGCTGGTAGACATATATTCCTTTGGTATGTGCATGATAGAGTTGCTTACTTTTGAGTTCCCATACAGTGAATGCGCCAATCCAGCTCAAATATACAAGAAAGTTACTTCGGGGAAGCTACCTAATGCGTTTTACAGAATCCCAGATTTGGAAGCCCAGAAGTTTGTGGGAAAATGTTTGTCAAATGTCTCAGATAGACCATCAGCAACGGAGCTCTTGTTGGACCCTTTTTTAGCTGTGGACCAACTTGAAATTCCATTGCCACCAAACATACCATTATTTCCAAATCACACTCTACAGCTTAATTCCGCTCCACTAGTTCCCATTGAGCATCATCATGATCAAACAAAGAGTGCAGAAATGACAATTACTGGTTCAATAAACGAAGAGAACAACACAGTTTTCCTCAAAGTGAGGATCTCTGACATAACAGGGCACACGAGGCATGTGTTCTTCCCATTTGATACATTAAAAGACACGGCTATTCAGGTGGCGATGGAGATGGTGCAAGAACTTGAGATTAGCCACTTGGAACCATTAGAGATTGCTGCAATGATAGATCATGAGGTATCAGCTTTAGTTCCAAGTTGGAGGGACAGGGTTAAGTGTCACCACCAACGACAACACAGCTTTAACTACGAAGAAGATGAAGATATCAATAACCACCACCCCTTCTTCTTATCATCTTCTCCATCATCCCCTCGTGGTTCTGGCCACATGTCTGCTTCCAACTCCTTCAAAACCCATGTTCGCGGCAATCATTACCCTTTTGCTCAAGAAGGGTATCAAGATGACATGTTCATGAACAACGACGACGCAAGCTCTCAAGCCTCGATGAACTCCTTCAAGTGTTCAACCTTCCAATTCTGCGACCCTGGCCACGAAGACGAGCACGACGGAACCGAACGCAACAAGTGCACCACATTATCGTGCTGTGGCGGCGAAGAAGGCGAACCTCGTTTGGCGAACCCGGTTTTGAACCCGCCGCGGATGGAGTGTTCGTGCGGGTGCAGATTTGGGTCGGGTCACGGGTGCCCGAGGCTGACTCGGATCCGGTCGTGCCCGCACGAGCGGCGGAGCTTGCAGCTCCAACGGTCGATGATGTTGGAGGAGATTTACAAGTACAAAAGACGCTTCTTCAACACCATTGGTGCCGTTGAGAACATCGGGTTTCGGCATCCACTAAGAGGTGGTGTGTGCTTTCCTCGTGTGTAG


Promoter Sequence:
>Vu_13603::LG3:31471098-31473098(-)
CTGCGTTACACTCTGTCTGGTACCAATCAACATAGCTTGATGTATAAGGCTTTGAGGTCCTTTGGTGCTTTCTCATCTAGCTCTTCTTGCATCCTCTTGATCATTCCTCTTGTAAAGGTTCATGGCCTAGTCCTATTCCATCAGGAATAAAGGTGAAAAGGTGCGAAAGTACCTATTAGAGGCCTTTGAAAAGAGAAAAAAATAAGTCTACTTAGCACCTTATTTGCAATAGTAAGTATGTTTTTATAAATTAAATTCTATTGGTGTAAATCTTATTTGACATTAATATTGATTCAATTTGCAAAGGTAACTATCAATTTCTAGTAATTTTACCTCAACAATCTATTGGTTCTCTTGTGTTCATTACACAAGAAGCCTAACACTTTAACAATTAAAAGTACACTTCAAGTGTAAGTTTTTTAATAATTTATTTGCTGTGTACACATAATTTAATTTTATTAAGTTCCATATTAAGCACAAATTTCATTATACATTTAATTTTTATAGAGTGGTTTAGGCTTATTCGAGGTTTTAGGAACACATATCGCCTATAAAAGAAGTTGCAGTTTATTGCACCAATTGTAAGTAGTTAATCTTTCAAACTATTGAAATACAATTATAAAGTTGATAATATTCTATGAATTTAACTTGTAGTGCTCATGTCAACCATGGAACTCTGAGTGCAGATATTATATAATGAGATACATGTAGAAAATCATATCCGCAAACGTTGTGAACTTGTAAAATTTGGTAAATGTCAATATCTAATAATTAAAATCTCAACTATTTATCAATACAAGTTAACTCAAACTGTTCATTGTATAGATTTTCGGTAACATGTCTTTAATGGAGTAAGAGGTCCTAAACGAAGTTCAGGAACAATGGGCTTTTTTCCTTTTAAATGTTGATAGAAAATTATGTTAGATATTTTTTGTGTAAATATTAGATGATGTATTCATTGTTTCACGAGGTTATAAAGTGTTATGATGGGTAATTAGTAAGAAGCATAATTATTATTTTAAATATCTTGACTGAAATTATATCTATTTGAATTTTATGTAAGTTTGTATATGATAGATAGTAAATACAATTAACACTAATTAAATTTTATTTTAAATTACTTTTATCACCAATAATAAAATGGTGATCTTTCAACTCTATCACATTATCGAATAACTTTCAAAAACTTTTATTTCAAATCCCTTTATTTCTAACTATCTTTATTTTAATCCTAATTTAACCTCTTTTTCTAACTACTTAAATCAACTCTTCAATATCCGTCTTCAAATTCAAACACAGCAAGTCCATAACAATTTTATCCTAGGTAACATTTTCTCTCCAAAATGATAAACATGGTTTGTACAAAAATAAAATGATCCAAACATATAATAATAATAATAATAATAATTTAAAATCCATTTTATTAAAAATATTTTTTTAACTTTAAATTAAATATAAAACATTTTGTTAGTAGAAAGTAACATTTAGTCCATGGAAGTCACTGTTGCCAGTGATATTGATTTCCAGTTTTAGTATTTCAAATTAATATCATCAAATTAAAAAAAAAACAAATTTATGTGGAAAGTGTTACAAAAGGACACGTGTTCCAATTAGAAACCTTTTTGTGCACTGAAATAATCTAGAGAATCTCATTGACTAAATATTCCTCTGCAACCAGGACCACGACAAGAACGCCGTCACTTGTCCCTTGAGGAAAAACACTCGAAAGAGACACCACACATGTAGTCTTCGCAACACAGTAAACACAGTCTAATATTACACCAATCACAACCCTCTCGCAAACTCTGTGATGCACATATCTGAATTTGGGACTTTCTCTTCTGTTCCTTTCTCCACCCAACATCACAAATCTTCAACCCTTCTATAATCACGTTCTCTCTAATCCGATCTTTTACATTCCACCACTCCTATCCACACATGTTTCTGTCAAACAATGCCGATTTATTCTCCAAATTTAGCAGCCATGTCTCCTCTTATTT


Gene Sequence:
>Vu_13603(-)
GGTCTTTTCCTTTTCCAACCCACTCTTCAAACACCCTTTTTCTTCCATTATCTTCAACACCAAGGCACCAGCTATGAACTAATCAACACCCTTTGGCTCAGAATCCACACTCTCTAGTGTGGTCTCATTCCGGGTTGCAACTCATGCCACATTATTAACTCATTATTTGTGTCTGATCTACACACGACGGTTTCTTTGTCCTCTTATCAACCAAGAAAGCAATAAAGAGTGTCATCTCTCCCTGTCTCTCTGTCTCTGTGCTCTCTCCCTCTTGACACTGTTCAACCAATAGTTAACAAGCCCATATATGGGTTTTCACGTGGAGCTGTTGAAATAGCATGCATGGTTAATGCCAGTTGTGACTACTCAAAGACCCTTGTGGCTATTATTTGGTGTCTCCTACCAGAGCCATGAGTGGAAGCTTTTCATTATCTAACACCCTCTTTCAAATGCTTCCTAAACTCAGCTTGAGATTATATATAACTATAGTGTTTTGTTTTTATATTATCAGTATTCTTATCAATACATAGTAAGCAAAGCACAGCACGGCTTTAATAAGCCAGAGAAGCTGTTGTTGAGATGGAATTGCCTGATACAGTCAGTACAGCCATGTACAAGGGGAGATTCTGCACTAGTGGTGGAGTTAAGTCTCAGCTTGGATATGTTGAAACTGATCCATCTGGTCGATATGGCCGTGTAAGTTTTTTTCTTTGCTTCTCTTTTCTCATCTTACTTTTTGATTTTCCATGTAGAATAGGCTTATAAAAAGTTGTTGGCAAATATGAATTGGTAATGAATTAGTTGCTATTTCTGGGTCAATTAAGGCTTAATGGATGTTCAACTTGAATTCAGAACTAAAACTGATTTCTAAATTACATGAGAATTAACTTGATTCTTATACTTTATTCCAAGGAGTAATTTAATGACAGAACCATAGTTTGTTTTTATTGAAGTTAGTTTTATTTAAAGGCTTGGGAATAAAAGGAGTTGACTTTGTCTAAGTACATGGTTTTCATGGAGACTGCATATCTGAAGATAAAAGGAATTTACAATAATAAATAACCAGATGTAAATCTCCTTTAATAAGTCAGTTTTGTAAATTTAAAGTCCATTTCTTAAGAAATTTTAGGCCATGGTAGATTCTAGAATGACTCATAAGGATGAAAAATGAGTGGTTTATGCTTGTCTCAGTATTATTTTGATGTTGATTAATCTAATTGACTAATTCACATGCATTCTGGTGATTGTTGGTGCTTGTAGTTCAGGGATGTTCTTGGCAAAGGAGCAATGAAGACTGTGTATAGGGCATTTGATGAGTTACTGGGGATTGAAGTGGCTTGGAACCAAGTCAAGCTTGGTGATGTCTTTCACTCACCAGAACAACTTCAGCGCCTTTATTCAGAGGTTCATCTCCTGAAGCACCTCAACCATGACTCTATGATGATCTTCTATGGTTCTTGGATCGATGTCAACAACAGAACCTTCAACTTCATCACTGAATTGTTCACCTCCGGTACACTTAGAGAGTAATCAATCAATCCCTGAACTTTGATTAAATTAACCATCTTTGTTTCATAGGTTATGGTATATTTGTGTTAACATAATATATTTTATGTTTATAGGTACAGGCAAAAGTATAAGCGAGTAGATATCCGAGCAGTTAAGATTTGGGCTCGCCAGATTCTTAGTGGCTTGGAGTATTTACACAGCCATAATCCTCCTGTAATACATAGAGATCTCAAGTGTGACAACATCTTTGTCAATGGCCATCAGGGGAGGGTCAAGATTGGAGACTTAGGCCTAGCAGCTATACTTCGTAGTTCTCAACATGCCCACAGTGTCATAGGTGAGGATTTGGAATTTGCTTAAAATTGATTTTGAGGTGAAGTGATTTCAAGGAACCTGAGCAACACAAGTTTTAACTGCAAGGACCAAATTGTACATTATCAGTAGTTAATCTGTCTAGACCTTGTTATAAACTGAAATTTTATGTTTTATGTGAACCATCAGGCACACCAGAATTCATGGCTCCAGAACTGTATGAAGAGAAATATAACGAGCTGGTAGACATATATTCCTTTGGTATGTGCATGATAGAGTTGCTTACTTTTGAGTTCCCATACAGTGAATGCGCCAATCCAGCTCAAATATACAAGAAAGTTACTTCGGTAAGCTTAAGTGAACACTTGTTCCAATTTTCCCTTCATTTGACATGATTCATTGATTTCTAATACTTTGAATAATTTCATATACCAGGGGAAGCTACCTAATGCGTTTTACAGAATCCCAGATTTGGAAGCCCAGAAGTTTGTGGGAAAATGTTTGTCAAATGTCTCAGATAGACCATCAGCAACGGAGCTCTTGTTGGACCCTTTTTTAGCTGTGGACCAACTTGAAATTCCATTGCCACCAAACATACCATTATTTCCAAATCACACTCTACAGCTTAATTCCGCTCCACTAGTTCCCATTGAGCATCATCATGATCAAACAAAGAGTGCAGAAATGACAATTACTGGTTCAATAAACGAAGAGAACAACACAGTTTTCCTCAAAGTGAGGATCTCTGACATAACAGGTATGCACACTTTCATCCCGATTTAGATAGTCTCGGTCAATAATCATAATCATGGTCTATCACTATGTTTCACATAAAAATTGATTATATTATGAAATCGTTTAATGAATAAACACAGTCTCATTAATTTTTATACGATACATAATCAAAGCATTGATAAAACTTTGATTATGCAGCACAGAAATTGGCCAGAACCACTTACAAATTTCTCAATCCTGATAGCAGTCTTACTAAAGATTTCTTTTTTTCTTACTAGGGCACACGAGGCATGTGTTCTTCCCATTTGATACATTAAAAGACACGGCTATTCAGGTGGCGATGGAGATGGTGCAAGAACTTGAGATTAGCCACTTGGAACCATTAGAGATTGCTGCAATGATAGATCATGAGGTATCAGCTTTAGTTCCAAGTTGGAGGGACAGGGTTAAGTGTCACCACCAACGACAACACAGCTTTAACTACGAAGAAGATGAAGATATCAATAACCACCACCCCTTCTTCTTATCATCTTCTCCATCATCCCCTCGTGGTTCTGGCCACATGTCTGCTTCCAACTCCTTCAAAACCCATGTTCGCGGCAATCATTACCCTTTTGCTCAAGAAGGGTATCAAGGTACCTACATCTTTTCACTTAGACTAAATATTTTATATGCAATCAGAACTATACAAAAATTTTGCTACTTGCAAGACTCATAATTAACTTGTAACACGAACTCGTCGCAGATGACATGTTCATGAACAACGACGACGCAAGCTCTCAAGCCTCGATGAACTCCTTCAAGTGTTCAACCTTCCAATTCTGCGACCCTGGCCACGAAGACGAGCACGACGGAACCGAACGCAACAAGTGCACCACATTATCGTGCTGTGGCGGCGAAGAAGGCGAACCTCGTTTGGCGAACCCGGTTTTGAACCCGCCGCGGATGGAGTGTTCGTGCGGGTGCAGATTTGGGTCGGGTCACGGGTGCCCGAGGCTGACTCGGATCCGGTCGTGCCCGCACGAGCGGCGGAGCTTGCAGCTCCAACGGTCGATGATGTTGGAGGAGATTTACAAGTACAAAAGACGCTTCTTCAACACCATTGGTGCCGTTGAGAACATCGGGTTTCGGCATCCACTAAGAGGTGGTGTGTGCTTTCCTCGTGTGTAGATTCAGAGCTAAGAAGCTCTTCTTGTTCTTCTTCTTCGTGTCGTTGATGTGTGAAAATGATCAAATATATGTGTATAATTAATAAATCTGCGTGTTTGGAAAGACCATGTGGCTTGTTTTTAAGATGTTCTGCATGTTCTTAATCTTCCACTCTGTCTGCTACCAAATTTGAACAGAGTACTTTTGATTTATATGTCATGATCATTAATGCAAGGTTTTAAATTATGGTTCTGGTTGT