Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13448 LG3 28662276 28663216 leucine-rich repeat family protein
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
C/T 28662290 synonymous_variant p.Ser5Ser
C/A 28662306 missense_variant p.Gln11Lys
G/A 28662316 missense_variant p.Ser14Asn
G/C 28662373 missense_variant p.Gly33Ala
C/G 28662388 missense_variant p.Ser38Cys
T/A 28662431 synonymous_variant p.Pro52Pro
T/G 28662463 missense_variant p.Leu63Trp
G/A 28662475 missense_variant p.Gly67Asp
T/G 28662503 missense_variant p.Ser76Arg
G/A 28662518 synonymous_variant p.Leu81Leu
G/C 28662522 missense_variant p.Val83Leu
C/T 28662528 stop_gained p.Arg85*
G/A 28662531 missense_variant p.Gly86Arg
G/A 28662537 missense_variant p.Glu88Lys
T/C 28662540 missense_variant p.Tyr89His
C/A 28662549 missense_variant p.Arg92Ser
G/A 28662550 missense_variant p.Arg92His
G/A 28662555 missense_variant p.Ala94Thr
A/G 28662559 missense_variant p.Gln95Arg
G/A 28662560 synonymous_variant p.Gln95Gln
T/A,G 28662579 missense_variant p.Tyr102Asn
T/A 28662582 missense_variant p.Leu103Ile
G/C,T 28662623 synonymous_variant p.Ala116Ala
C/T 28662636 missense_variant p.Leu121Phe
T/C 28662652 missense_variant p.Ile126Thr
G/T 28662664 missense_variant p.Gly130Val
A/G 28662726 missense_variant p.Lys151Glu
G/A 28662730 splice_donor_variant&intron_variant
T/A 28662762 intron_variant
A/G 28662794 splice_region_variant&intron_variant
T/A 28662797 splice_acceptor_variant&intron_variant
T/C 28662839 missense_variant p.Trp166Arg
G/A 28662840 stop_gained p.Trp166*
G/A 28662865 stop_retained_variant p.Ter174Ter
T/C 28662906 missense_variant p.Val188Ala
T/C 28662935 splice_region_variant&intron_variant
T/C 28662953 intron_variant
G/C 28662962 intron_variant
C/G 28662969 intron_variant
G/A 28662990 intron_variant
C/G 28663024 splice_region_variant&intron_variant
G/C 28663063 missense_variant p.Ala206Pro
C/G 28663073 missense_variant p.Ala209Gly
G/C 28663117 missense_variant p.Ala224Pro
A/G 28663212 synonymous_variant p.Pro255Pro

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13448.1
MKCDSCRRGSQGMSELEAEIAVLSKVRHKHLVGFLGHSIEGDEKLLMYEYMPQGTLTQHLFSLCENGSAPLTWKQSVTIALDVARGVEYLHRLAQQSFIHRYLKPSNILWGDDMRAKVTNLGLVKIIAPGGNDSVWTRVAGTLGYLEPEYKATTGRVTRKAEVYAFGVVLIELISGRKTLDNSLLEEMSHLVSWFSHCTAPKPHKRPDMRHAVNVLVPLVEQWKPACTHEQHEEEGCDVIYEGHYDMSISEILSDH*


CDS Sequence:
>Vu_13448.1
ATGAAATGTGATTCCTGTAGAAGGGGAAGTCAGGGAATGAGTGAATTGGAAGCAGAAATTGCAGTTCTGAGTAAAGTCAGGCATAAACACTTGGTGGGTTTTTTAGGACATTCTATTGAAGGCGACGAAAAGCTTTTGATGTACGAGTATATGCCTCAAGGGACATTAACTCAACATTTGTTCTCTTTGTGTGAAAATGGTAGTGCTCCTTTGACTTGGAAACAAAGTGTAACAATAGCTTTGGACGTAGCACGAGGAGTGGAATATTTGCACCGCCTAGCTCAGCAAAGCTTCATTCATAGATACTTAAAACCCTCAAACATACTTTGGGGAGATGACATGAGAGCGAAGGTTACAAATCTTGGTTTGGTTAAAATTATTGCACCAGGAGGAAATGATTCTGTGTGGACACGAGTGGCGGGAACACTTGGATATCTAGAACCTGAGTATAAAGCTACTACTGGAAGAGTGACGAGGAAAGCGGAAGTGTATGCATTTGGAGTAGTTTTGATTGAACTAATTAGCGGTAGAAAGACATTGGACAATAGTTTGCTGGAAGAAATGTCTCACTTGGTTTCATGGTTCTCTCATTGCACTGCTCCTAAACCCCATAAAAGGCCTGATATGCGGCATGCAGTGAATGTCTTGGTTCCTCTGGTGGAGCAATGGAAGCCCGCCTGCACCCATGAACAACATGAAGAAGAAGGTTGTGACGTGATCTATGAAGGACATTATGATATGTCCATCTCGGAAATCCTCTCCGACCATTGA


Promoter Sequence:
>Vu_13448::LG3:28660276-28662276(+)
CAGCAATTACAATATACATACACATATACATAAATGCCATAGACATGTTCTTTATCAATGATCACGTACATCAGTCACTTAGCGTAGTCGATTGAAGGTAAATATTACACAATCCTTCTAAAGAAACACGACAATAAATCCCAATTTCTCTGCAACTCAAACCCTAATTTTCTGATTTACCCTCTCACAGCCACGTATCACCCTCTCACTGCCACGTATTACCCACACAAAGCCACGTAGCTAACTTCAGTCCACCCTGTCAGCTGCTCCGTTAAAAACTTAACGCCGTTTCCAAAAAGGACTTGATTGCACACTTTTTACAAAAGATGGGATCACATTGAACTTCTAAAAAAAGGTGGGACCACATTGAACATTGGTCTCCTTTCTAGGGACCAAAAAAGGTATTAAACATTTTTATTTCTTTCATATTTATTTTTATCAATCCAAAGGATATATATTTTTATTATTCTATATTGATGCTCTACTCCGTAAAAATAATGTACACTGACATACACAAAATAAGTTATCAAACCAAAATTAAAAAGTAATTATTCATAAAATGATAACACATACATAACAAAGATTTGATGAGTCTCTTAATTTTTTCTCAACATTCAAAAAATTATTTATCATCCTACACATAATAACAAAAGTTCATAACTTAATTAACTTCATTTCTAATTTTTTACACCACCAATAATAATTTTTTTAAAACCATTATAGTAGTATTTTTATGCAAAATTCTAAAAAATTCAATTTATATATACATATTTTTTTTTTCAACAAACAAAAAATACAAAGATTAATTTAGAATATTACAAAACCAAATTTCTTATTTTTCCCTCTCTCAAATCAATTAAAATTTAATCTCTACATTTTTAATTAATTATTTTAATTTACTTTTCCCTAAAAATTAAATCTATTTTTTCTTATTTCTTCGTATTCTTTTTCAATTTTTTCTCCCTTTAGTCACATAAAAGAAAAACTCAAAAATCCACCTACAATTTGGATAACCGGAGATCGAATTCAATTTCGAAGCTGCAAATCAGATGGGGGAATTCGGCTATTGAATGAAATATAGTATACATTAAGTTAGTAATTATATTGTAACTGAAATAATATACAAATATAAAAATAAATAAATAAAAATTAACTTATATTTTTAGCTACTTATATAGTTTTAATTTTGCAATTTAGTATTATTTCAATCTAAATTATAACAATTATTAGAACAAATAATAAAATTTTAAAATAATATTATATTTAGTAACCAAATCACTAATTCTTATAAAGTTTAAAAGATTAATTTTATTTTTGAATTTCTTTGTCAAAACCATAAATGTAAACAAACAAAAAAAAATTTGCAGGCTCCGATTAAATAAACATTTTATCTATTTTCATTTTCTTTAATATTTTATTTTCACCTGCATTTACCAATTTAACTCATTTGAGAAACTTGTATCTCAATGACAATCATTTGGAGATCAATACCAAGAGGCTTGATGAGTTTGACTCAACTTGAGTATCTGGACGTGTCTAATAACAATCTATCTTTTCTTATGTTTTAAAGTTCCCAACCAAGATGATATTCAATACTAAAGGGGTATTCTGGAGGTGGTGGTGGTAGTGGAACTACTTCGTCCAGCGGTTCTGGTGATGTATCAATCGGAAGTCCAAATATAGCATCAGGTGGTTTTTCATTCTCTCCTGCTTGGATTGTAGGGTTTGTGGTTATTGGTGTGTTTTTTGTCGCGGTGGTTGTGCTTGTCTTTTGCGTGTGTCATACTAAAAACTGGAATTGTACATTGGGAAAGGTTAAGAATCTAGAAAACGAAAAGAAAGTTGTTCCGAGAATTGAGGGTTAATGTGTTACCATGTCAATTCAATTTCTTCGACAAGTAACGAAAAATTTCAGTGAAGAAAACATTTTGGGTAGGGGGGATTTGGAGTGGTTTATAGAGGGGAATTGGATCATGGAACTAAAATTGTTGTGTAGAGAA


Gene Sequence:
>Vu_13448(+)
ATGAAATGTGATTCCTGTAGAAGGGGAAGTCAGGGAATGAGTGAATTGGAAGCAGAAATTGCAGTTCTGAGTAAAGTCAGGCATAAACACTTGGTGGGTTTTTTAGGACATTCTATTGAAGGCGACGAAAAGCTTTTGATGTACGAGTATATGCCTCAAGGGACATTAACTCAACATTTGTTCTCTTTGTGTGAAAATGGTAGTGCTCCTTTGACTTGGAAACAAAGTGTAACAATAGCTTTGGACGTAGCACGAGGAGTGGAATATTTGCACCGCCTAGCTCAGCAAAGCTTCATTCATAGATACTTAAAACCCTCAAACATACTTTGGGGAGATGACATGAGAGCGAAGGTTACAAATCTTGGTTTGGTTAAAATTATTGCACCAGGAGGAAATGATTCTGTGTGGACACGAGTGGCGGGAACACTTGGATATCTAGAACCTGAGTATAAAGGTATATAGAAAGCTTTTGTACATGTTTGTCTTTATTTGGTTTTATTAATTAATGTAATGTTGTCAGCTACTACTGGAAGAGTGACGAGGAAAGCGGAAGTGTATGCATTTGGAGTAGTTTTGATTGAACTAATTAGCGGTAGAAAGACATTGGACAATAGTTTGCTGGAAGAAATGTCTCACTTGGTTTCATGGTTCTGTAGGATTATAGATAACATGGAAAATATCTCACTGGTAACTCATGAAAGTCTAAACCTTGACGGTGAAAGCATGGAGAGCATATGTAAATGGTTGACCTCGCAGCTCATTGCACTGCTCCTAAACCCCATAAAAGGCCTGATATGCGGCATGCAGTGAATGTCTTGGTTCCTCTGGTGGAGCAATGGAAGCCCGCCTGCACCCATGAACAACATGAAGAAGAAGGTTGTGACGTGATCTATGAAGGACATTATGATATGTCCATCTCGGAAATCCTCTCCGACCATTGA