Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_13430	LG3	28317444	28317935	hypothetical protein LR48	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	axillary shoot meristem initiation, axillary shoot meristem initiation, axillary shoot meristem initiation, axillary shoot meristem initiation
Cellular Component	located in	nucleus
Molecular Function	enables	molecular_function

SNP	Position	Effect	Amino acid change
A/T	28317465	synonymous_variant	p.Thr157Thr
C/G	28317468	synonymous_variant	p.Ala156Ala
C/A	28317526	missense_variant	p.Ser137Ile
G/A	28317573	synonymous_variant	p.Ser121Ser
C/T	28317627	synonymous_variant	p.Glu103Glu
C/A	28317790	missense_variant	p.Arg49Ile

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_13430.1

MECINPTSCEGSSSKNKSKEKKGVKKGSKGGVKLSTDPQSVAARERRHRISDRFKILQSMVPGGSKMDTVSMLEGAIHYVKFLKTQIWLHQALINFVDFDHDEAPVYLPAEYNFPHQHSFSLQQNPSSVSVHSHQQSLPQPPLAQCCFQGEEDFDATMKYWPS*

CDS Sequence:
>Vu_13430.1

ATGGAGTGCATCAACCCTACCTCTTGTGAAGGGTCATCTTCCAAGAACAAGAGCAAGGAGAAAAAGGGTGTGAAGAAAGGGAGCAAGGGAGGCGTGAAGCTTTCCACCGATCCACAAAGCGTGGCAGCCAGAGAAAGAAGGCACAGAATCAGTGACAGGTTTAAGATCCTTCAGAGCATGGTCCCTGGTGGGAGCAAGATGGACACAGTCTCCATGTTGGAGGGAGCCATTCACTACGTCAAGTTCCTCAAAACCCAGATTTGGCTCCACCAAGCATTGATAAACTTTGTAGATTTTGATCATGATGAGGCTCCCGTGTACCTCCCCGCAGAGTATAATTTCCCTCATCAACATTCCTTCTCCCTTCAGCAAAACCCTTCTTCAGTTTCGGTGCATTCTCATCAGCAGAGCCTACCACAGCCACCACTAGCACAGTGCTGCTTCCAAGGTGAAGAAGACTTTGATGCGACTATGAAATATTGGCCTTCTTAG

Promoter Sequence:
>Vu_13430::LG3:28317935-28319935(-)

AGAAAATTTTAAAAGGATAGGCATATAAACTTTGGCTTAAACATATAAACTTTGCCTTAAAATTAACATTTTGTTTTCTTGAAAAGAAGAGCTAAATGTATGATTGGACCTTAAGCTCTTTTCTTTTCTTCTCTCCTTTGAAAGCAACAATGCAAATGAAAAAAGAAACAAAACAAAACAATAACATGCATTGTTATTCTCTTTTAAGAAACAGTGTATAACCTAAGGATGAAAAGCACAAAACCGTACACAATAAAGCCAGCAACTAATGGTCTATTTCGTCCTTGGATTTAGACATCCTGCAACTGAAAAACATTTGCTTCGGTTTCAGAGGAAGGACCCCCCTCTAAACAATTCCTTGCTTCTTCTCTCTTTGATCATCACTGCCCACACTGTAATCAAAGACAAATAGATGGCCTAATCTCTGTCACATGCTAATTGGTTAGTGTTGTTGCCCTCTTTCTGATGTGGGTCATAATGTCACACCACAATTTTTACTTTCTCCAACTTTATATAATAGTCCAATGAATTAATTGAGTTTAGTTAAACATTGCTAAGGATTCTCCCTCAAATAAATGTATAAGACATAATATAATATTAGATGATTTTTTTATAAACATTTAGTCTTGTTGAGATAGCCTTTCACATAAATTCATGTTTGGTTTAGTTAGTATATCTATATATATAAACAGCATCACAAGCTCTCACAATTTTTAAAGTTATATAGCAATATTATGTTATTTTAACTGTAGTTATTCCTGTAGTCAATGTTTCATCCGAAATTGAGTTAGAATCAGAATGGATTACTTTTGAATATTTTTTTCTTTGACGGTATTTATTCAAAAGTGAAATTAAATTAAAGTATTTTTGTTAATATAATTTGAACAAGATTTCCCTTGAACAAAATTGTCTAAACATAAATAAATTACATTATTTTGTTTTTATCAAAATTAAGTTTAAAACATAATTTGTATTCAAACTATGTAAGCATATCACTACTAAGGGTCTTATTTATGACCCTTGTTTACAAAAGTCTTGAATGTTGTGTTTGGATTAAATAAAGAGCCTAGCTAGATTCCAGTTTAAAATTAATTAACATTAATATTTGAAGATATATGCAAGACTTTTGAAGAAGTGTAAATGTATAATAATAATCTTTTAGATAACTATATTTCCACAAATCAACAAAATTAAATAATCTATTGAAACTTAGTATTTTACTCTCTTTTTTCCTACTATTACAGAAGTTTATTTTTTCTAATGATTATAGTTGTTTAAACATCATATTTCTAATCCGTTACTTGGTACATAGAAATTTGTTATTAGCAATAAAAACATGCTCAATTAATGCAAACTTTAATCCTAACTCATCTTCTCCATTTCAATCAACAACCTAATCGAAAACCAAATAAGAAGACTTTTTGATGTGATATGAAGGTCTCCTAACTGCAAACCTGAGTATTCTGATATAATAATCACTTTGTTGCATATTTATCACATAATTTAATTGAATGGTTAGAAATGATAGAAGGCAGAAACACTAAAGAGAAGAAGCAGCAGAAGCAAAAGAGCACAAAGAGAAAAGAAAAAGAAAATGAGGCCCTTAACCCGGGTCCCTACCTAAACCTGCCGTATCCTGCGCCAAAGATGGCTGATTCACATCACGACACCTATTCCATCCCCTCATTCAAAATCATTCATCCAATCTCTTTCTCACTCACTCCTCCAAACATTTTTGTTAAGGAACATGTTCCTTAATTTTAAGATTACTTTAACTACGAAAATAAACCATGTTGTTGGACGAGTATCTTAAACTGTGTGTACTTAGGTTTCTCTCAGGATAAAACATTCGTGTAAAAAAGAAAAGCTCACTCACTCACTTACAGACTCACCCTCATGCTATATAAACATGTGACAGGCATAAAAGGAACTACGTCCCCTACCAAATTCAAAGCTTGAACTTTTGTTTACCCCTTTGAGTACTTTGTGAAAGGCAGCAT

Gene Sequence:

>Vu_13430(-)