Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13427 LG3 28282834 28286037 receptor-like protein 12
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 28283183 missense_variant p.Ser117Asn
A/T 28283191 missense_variant p.Ile120Leu
T/A 28283237 stop_gained p.Leu135*
T/C 28283244 synonymous_variant p.His137His
G/T 28283374 missense_variant p.Val181Phe
A/T 28283419 missense_variant p.Ser196Cys
A/T 28283427 synonymous_variant p.Ser198Ser
G/C 28283429 missense_variant p.Gly199Ala
A/T 28283432 missense_variant p.Glu200Val
G/T 28283460 missense_variant p.Leu209Phe
A/G 28283477 missense_variant p.Gln215Arg
G/A 28283478 synonymous_variant p.Gln215Gln
C/G 28283493 synonymous_variant p.Ser220Ser
G/A 28283518 missense_variant p.Asp229Asn
C/T 28283526 synonymous_variant p.Ser231Ser
A/G 28283533 missense_variant p.Arg234Gly
G/A 28283540 missense_variant p.Arg236Gln
C/T 28283565 synonymous_variant p.Asp244Asp
C/T 28283574 synonymous_variant p.Asn247Asn
C/A 28283597 missense_variant p.Thr255Asn
C/T 28283604 synonymous_variant p.Ala257Ala
A/G 28283613 synonymous_variant p.Pro260Pro
A/G 28283622 synonymous_variant p.Thr263Thr
T/C 28283631 synonymous_variant p.His266His
T/C 28283639 missense_variant p.Phe269Ser
C/A 28283651 missense_variant p.Thr273Lys
G/A 28283656 missense_variant p.Val275Ile
T/A 28283664 synonymous_variant p.Pro277Pro
T/G 28283667 missense_variant p.Asp278Glu
T/G 28283680 missense_variant p.Leu283Val
G/A 28283682 synonymous_variant p.Leu283Leu
C/T 28283732 missense_variant p.Ser300Phe
T/G 28283781 missense_variant p.Ser316Arg
T/G 28283857 missense_variant p.Cys342Gly
T/C 28283863 missense_variant p.Phe344Leu
T/C 28283865 synonymous_variant p.Phe344Phe
C/G,* 28283868 missense_variant p.Asn345Lys
A/T 28283871 synonymous_variant p.Gly346Gly
A/G 28283872 missense_variant p.Thr347Ala
C/T 28283875 synonymous_variant p.Leu348Leu
A/G 28284042 synonymous_variant p.Leu403Leu
T/C 28284079 missense_variant p.Phe416Leu
C/T 28284094 missense_variant p.Pro421Ser
C/T 28284129 synonymous_variant p.Ser432Ser
C/T 28284133 stop_gained p.Gln434*
A/T 28284135 missense_variant p.Gln434His
C/T 28284153 synonymous_variant p.Phe440Phe
C/G 28284154 missense_variant p.His441Asp
A/G 28284155 missense_variant p.His441Arg
C/A 28284159 synonymous_variant p.Gly442Gly
A/C 28284171 missense_variant p.Glu446Asp
G/A 28284193 missense_variant p.Val454Ile
C/G 28284195 synonymous_variant p.Val454Val
C/T 28284204 synonymous_variant p.Ile457Ile
T/A 28284216 missense_variant p.Ser461Arg
G/A 28284223 missense_variant p.Asp464Asn
G/C 28284234 synonymous_variant p.Gly467Gly
T/C 28284245 missense_variant p.Leu471Pro
T/C 28284254 missense_variant p.Phe474Ser
A/T 28284256 missense_variant p.Asn475Tyr
G/C 28284263 missense_variant p.Arg477Thr
A/T,G 28284264 missense_variant p.Arg477Ser
A/T 28284267 synonymous_variant p.Ser478Ser
G/T 28284270 synonymous_variant p.Leu479Leu
T/A 28284273 missense_variant p.Asn480Lys
T/A 28284278 missense_variant p.Leu482His
A/G 28284305 missense_variant p.Asp491Gly
T/A 28284310 missense_variant p.Leu493Met
G/A 28284312 synonymous_variant p.Leu493Leu
C/G 28284316 missense_variant p.Leu495Val
A/T 28284323 missense_variant p.Asp497Val
C/G 28284324 missense_variant p.Asp497Glu
A/C 28284328 missense_variant p.Lys499Gln
C/G,* 28284332 missense_variant p.Thr500Arg
A/T 28284438 missense_variant p.Leu535Phe
G/T 28284445 missense_variant p.Ala538Ser
A/T 28284581 missense_variant p.Asn583Ile
G/C 28284636 synonymous_variant p.Ser601Ser
G/T 28284644 missense_variant p.Arg604Met
G/C 28284645 missense_variant p.Arg604Ser
T/G 28284651 synonymous_variant p.Leu606Leu
A/T 28285028 intron_variant
C/T 28285041 intron_variant
G/C 28285051 intron_variant
C/T 28285059 intron_variant
T/G 28285077 intron_variant
C/A 28285094 intron_variant
G/T 28285095 intron_variant
T/G 28285170 intron_variant
G/A 28285172 intron_variant
A/T 28285178 intron_variant
G/A 28285195 intron_variant
G/A 28285239 stop_retained_variant p.Ter651Ter
G/A 28285244 missense_variant p.Asp653Asn
C/G 28285275 stop_gained p.Ser663*
T/A 28285290 missense_variant p.Leu668Gln
G/A 28285300 synonymous_variant p.Leu671Leu
T/G 28285356 missense_variant p.Leu690Trp
T/A 28285380 missense_variant p.Leu698Gln
G/A 28285444 intron_variant
A/G 28285483 intron_variant
A/T 28285542 intron_variant
T/C 28285558 intron_variant
G/T 28285578 intron_variant
G/A 28285612 intron_variant
T/C 28285617 intron_variant
A/C 28285671 intron_variant
A/G 28285738 intron_variant
G/A 28285742 intron_variant
A/T 28285792 intron_variant
C/G 28285809 intron_variant
A/G 28285812 intron_variant
C/T 28285814 intron_variant
T/A 28285818 intron_variant
T/C 28285825 intron_variant
C/T 28285830 intron_variant
T/C,G 28285848 intron_variant
T/G 28285849 intron_variant
A/G 28285852 intron_variant
C/T 28285856 intron_variant
C/T 28285890 missense_variant p.His709Tyr
C/G 28285898 synonymous_variant p.Ser711Ser
A/T 28285917 missense_variant p.Met718Leu
G/A 28285940 synonymous_variant p.Ala725Ala
A/G,T 28285974 missense_variant p.Thr737Ala
C/A 28285975 missense_variant p.Thr737Asn
G/A 28285997 synonymous_variant p.Pro744Pro
T/A 28285998 missense_variant p.Trp745Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13427.1
MRISQCPFVFIILCYSFWIHHTVYFTGVSGQIVEDQQQSLLKLKNSLIFEQEKSHKLVFWNSSVDCCKWTGVTCDKEGHVIGLDLNGESINGGFDNSSTLFNLQSLRILNLSVNNFSSQIPSGFSRLKNLTYLNLSHAGFVGHVPTEISSLTRLVTLDISSLSYLIGRPLKLEKTDLQMLVKNFTMIRQLYMDGVSVSGEGNEWSNALLQLHSLQELSMSNCNLSGPLDHSLTRLRNLSIIRLDQNNLSSPVPETFADFPNLTTLHLSFCELTGVFPDKIFQLATLSDIDLSFNYDLNGSLPELPPNSSLQKLIVSHTRFSGALPASIGNLRQLSILDLSNCHFNGTLPSSMSGLKKLTSLLLSINNFSGQIPLLNISRNLTHLDLSHNKFTGSITYVHLEGLRELVQIDLQDNLFDGNIPSSLFALPLVQSIQLSNNHFHGQLDEFSNISSSVLEILDLSSNDLEGPIPLSIFNLRSLNVLKLSLNKLNDTLKLDDIKTLENLTTLALSHNNLSVETNETDKGFVSSFHNMGSLELASCNLTQFPSFLRNQSKIVTLDLSSNHIRGSIPIWIWQLDSLIELNLSHNFLSSLEGSVQNTGSNLRLLDLHANQLQGKLQIFPVHAIYLDYSSNNFSFSIPTWPMLQIIDVALNRFSGLLPGKCFKTWKAMKLDEYHHVSKFNDIGSDVLTFGGIYYQDSVTLTIKGLGLFIVPLLFWKKWRERYWKRVDSILCGIFPQLNLEYETRGGQSYQVLRWRP*


CDS Sequence:
>Vu_13427.1
ATGAGAATTTCCCAATGTCCTTTCGTTTTCATCATATTATGCTACTCCTTCTGGATACACCACACTGTTTATTTCACCGGGGTTTCTGGTCAGATTGTTGAAGATCAACAACAGTCATTGCTAAAATTGAAGAACAGCCTAATATTCGAGCAAGAAAAATCTCACAAACTTGTGTTCTGGAATTCAAGCGTGGATTGCTGTAAGTGGACAGGTGTAACCTGTGATAAGGAGGGACATGTTATTGGCCTTGACCTGAATGGAGAATCAATCAATGGTGGATTTGACAATTCAAGTACTCTTTTCAACCTGCAAAGTCTCAGGATACTGAATTTGTCCGTTAATAACTTCAGTTCTCAGATACCATCTGGATTCAGCAGGTTGAAGAACTTAACATATCTGAATTTGTCTCATGCTGGTTTTGTGGGCCATGTTCCAACAGAGATTTCTTCCCTTACAAGGTTGGTAACTCTTGATATCTCTTCTCTTTCCTATTTGATTGGGCGACCGCTGAAACTTGAAAAAACAGATCTGCAAATGCTTGTCAAAAACTTCACCATGATTAGACAATTGTATATGGATGGTGTAAGTGTATCAGGTGAGGGAAATGAATGGAGCAATGCTTTGTTGCAGCTACATAGCCTGCAGGAGCTGAGCATGTCCAACTGCAATCTCTCAGGACCCCTTGATCATTCCCTGACAAGACTTCGAAACCTATCAATCATTCGTCTTGACCAAAACAACTTATCATCCCCGGTGCCAGAAACCTTTGCCGATTTTCCAAATTTAACAACCCTTCATCTTAGTTTCTGTGAATTGACAGGAGTATTTCCTGATAAGATCTTTCAGTTGGCAACATTGTCCGACATAGACTTGTCATTCAACTATGATCTTAATGGATCTTTGCCTGAATTGCCTCCGAATTCTTCCCTTCAGAAATTAATTGTGAGTCACACAAGGTTCTCAGGAGCATTGCCAGCTTCTATAGGTAATCTTAGGCAGTTATCCATCTTAGATCTTTCTAATTGCCATTTTAACGGAACACTACCCAGTTCAATGTCAGGACTCAAGAAACTCACTTCTTTGCTCTTGTCGATAAATAACTTCAGTGGTCAAATTCCATTGTTGAATATTTCCAGGAATCTCACGCATTTAGACTTATCACACAATAAATTCACAGGTTCAATCACTTATGTTCACTTGGAAGGCCTAAGAGAGCTGGTCCAAATTGATTTACAGGACAACTTATTTGATGGAAACATCCCTTCTTCTCTTTTTGCACTTCCATTGGTACAAAGCATTCAACTTTCCAACAACCATTTCCATGGCCAGCTTGATGAATTTTCAAATATCTCATCCTCCGTCTTAGAGATCCTTGATTTAAGTAGTAATGATTTAGAAGGGCCCATTCCTCTATCTATTTTTAATCTCAGATCACTGAATGTCCTCAAACTATCTTTAAACAAGTTAAATGACACATTGAAGCTAGATGACATTAAGACACTTGAAAATCTAACTACACTAGCCCTTTCACATAACAACTTGTCAGTGGAGACAAATGAGACGGATAAAGGCTTTGTATCTTCATTCCACAATATGGGCAGTTTAGAGTTGGCTTCCTGCAATCTGACACAGTTCCCCAGTTTTTTGAGAAACCAATCCAAAATAGTCACTCTAGACCTCTCAAGTAACCATATTCGAGGATCTATACCAATATGGATATGGCAACTTGACTCTCTAATTGAATTAAATCTTTCTCACAATTTTCTCAGCAGTTTAGAAGGATCTGTTCAGAACACTGGTTCGAATCTGAGGCTCCTTGACCTTCATGCTAACCAACTCCAAGGGAAGCTTCAAATATTTCCAGTGCATGCCATTTATTTGGACTATTCAAGCAATAATTTCAGTTTTTCTATTCCAACTTGGCCAATGCTTCAAATTATTGATGTGGCTTTGAACAGATTTAGTGGTTTACTTCCAGGAAAATGTTTCAAAACATGGAAGGCTATGAAGCTTGACGAATATCATCATGTATCAAAGTTCAATGACATAGGATCTGATGTCCTTACATTTGGTGGTATATATTATCAGGATTCTGTGACACTTACAATCAAAGGCCTCGGACTTTTCATTGTTCCCCTACTGTTTTGGAAGAAATGGAGGGAAAGGTACTGGAAGCGTGTGGACTCAATTCTGTGCGGCATCTTCCCACAACTGAATCTTGAATACGAAACCCGTGGAGGACAAAGCTATCAAGTATTAAGGTGGAGGCCTTAG


Promoter Sequence:
>Vu_13427::LG3:28280834-28282834(+)
AAATGTTTGAGTAAAACTTTAGTATTGCACTTGTAGATCAATGTAATAGAACTCTTAGTAGTGTAGGATTTTGTATATATATTTTGATGTTATAATTACGTTTAGATAATTGTAATAACATCGTATATTTCCTCTTAAGAGTTAATAGTTCTCTATATATTGAATGCATGATTATTCCCTTGATAGTTAAACACTATTAAAATAGGATGTTACAAACTTAATCAAATTACATATATAATTCATTTATAATACAATAAAAAATACAAATAAGCATGACAATATTTGTATTTACTCCAATTAATATAAAAGGATTTTCTTTTTTGGTGTTCATATTTGTTTTTCAAATTTACTATTTAAATAATTTTTTAAAATTAAAATAATTATTTTACTAAAGTTACCTTTCTTTAAATTTATCCATTTTTTCAATTGGACTATTTTTATAAACTTAACCATTTTTTTAATTATAAAGTTATCAATAAAATAAAATAAAAACCTATTTATAATAAAATTATAAAAATTATTTATATTTAATTTCATAGTGATAATAATAATAATAATTTAATTATTTTTTTATTATCATAAAAAAAAAACACACACATGAATGTATCACTTGTGTTTTCACTAATACGGGATTCCTCTTTTTGAGTGTTTACATCTATTTTCTAATTTTATCCCCTAAATAAAAAATTTTAAATTATAAAACTTTAATTTTATCTTTTAAAGTTTTTTATTTAACCGATTTTTTAAACTTAACTAGTTTTTTTTTCTAATTATAAAACTGCCTACAAAATAAATGAAAACCATTTACAATAAAATATACAAATTATTTATATTTAATTTTATAATTATAGTAATCTATATTATTATATAAAGTAGATTCATCTCCTTGGTGTATATTTTTTTTTCTGTTTACAATTTTTATTTTACCAAATTTATCCTTTAAATGATTTTTTTTTAAAATTTAACCTTTTTTTTAAAATTCAATCATTATTTAAATTTAAAATTGATTAAACTAAAATAATTATTATAATAAAATACTACTTATAAAATAAATAAAAACTATCAACAACAGAATTATAAAACTAATATAAATTAGAAAAATTAAGTTATATAAAGCTTTAACCTACGTCAAGTCATTGGCATTCAATATATATCTCGAAACAAAAACTGCTCCATCCCTATAACTAATCATGAAAATTAACTAATGCAATAAATCAACCTATATTTGATAATTTACTGTATAGTGAATCAATTAGAAATCTTAACAATCTCTTCGTACAAACTTGCCAATAATTCAACCACCATTTTACATGCTAAGCTTCCAAGAAAGTTTAGACAAGAAATGTCTTGGAAAGTGAATGCATTAATGGTAACGCTGTTTTTCTTTGTTTTCTGGTTGGATAATTAATTTCATGAAAATTAGAAACAAAGAGAGAAGAGAAAAGAAAAGAAAAGTGGTTCCTGTGGAAGACGCGGTTTGCTTTGACTCTCTCTTCAACCATCTTACACTTTCTCACTCAACTTTTCCTGTCACCGTTCGTTGGATCATAATCAAACACTGTAATACAAGGTTTAGTTATAGTTGTATATTATCTGGTTTTTGGTAATTGTCAGTTCGATGCACAATCACATTAATACATTCACGTTGACGTCTGTGTATTTTTCTCAAATATTTAATGTTACAACAACGAATGAACCAACATTGCATAATAAAATTGTGGAAAAATCAAATTAAAAAAATTGTAAAGTTAGAGTGTTTAAATTTAATATTAAACCTAAATAATATCTTACTTGAATCAAATAGTCTTGGATATAAGTTGTATGGCTCTGCTAACTTAGAAAATAAAATTTAAGAATACTTTTGATGACATTTCGTTGGCAAATTGCATCGGAAGATAAACACTGGAAAACAAGGGGCCATTAGCTATCATTAATTAGCCTGTTTCCTTCTTCAGCCTTTGTTTTTAAGTTCATTGTGTGTCTTTCTCAGTAGACTCCAA


Gene Sequence:
>Vu_13427(+)
ATGAGAATTTCCCAATGTCCTTTCGTTTTCATCATATTATGCTACTCCTTCTGGATACACCACACTGTTTATTTCACCGGGGTTTCTGGTCAGATTGTTGAAGATCAACAACAGTCATTGCTAAAATTGAAGAACAGCCTAATATTCGAGCAAGAAAAATCTCACAAACTTGTGTTCTGGAATTCAAGCGTGGATTGCTGTAAGTGGACAGGTGTAACCTGTGATAAGGAGGGACATGTTATTGGCCTTGACCTGAATGGAGAATCAATCAATGGTGGATTTGACAATTCAAGTACTCTTTTCAACCTGCAAAGTCTCAGGATACTGAATTTGTCCGTTAATAACTTCAGTTCTCAGATACCATCTGGATTCAGCAGGTTGAAGAACTTAACATATCTGAATTTGTCTCATGCTGGTTTTGTGGGCCATGTTCCAACAGAGATTTCTTCCCTTACAAGGTTGGTAACTCTTGATATCTCTTCTCTTTCCTATTTGATTGGGCGACCGCTGAAACTTGAAAAAACAGATCTGCAAATGCTTGTCAAAAACTTCACCATGATTAGACAATTGTATATGGATGGTGTAAGTGTATCAGGTGAGGGAAATGAATGGAGCAATGCTTTGTTGCAGCTACATAGCCTGCAGGAGCTGAGCATGTCCAACTGCAATCTCTCAGGACCCCTTGATCATTCCCTGACAAGACTTCGAAACCTATCAATCATTCGTCTTGACCAAAACAACTTATCATCCCCGGTGCCAGAAACCTTTGCCGATTTTCCAAATTTAACAACCCTTCATCTTAGTTTCTGTGAATTGACAGGAGTATTTCCTGATAAGATCTTTCAGTTGGCAACATTGTCCGACATAGACTTGTCATTCAACTATGATCTTAATGGATCTTTGCCTGAATTGCCTCCGAATTCTTCCCTTCAGAAATTAATTGTGAGTCACACAAGGTTCTCAGGAGCATTGCCAGCTTCTATAGGTAATCTTAGGCAGTTATCCATCTTAGATCTTTCTAATTGCCATTTTAACGGAACACTACCCAGTTCAATGTCAGGACTCAAGAAACTCACTTCTTTGCTCTTGTCGATAAATAACTTCAGTGGTCAAATTCCATTGTTGAATATTTCCAGGAATCTCACGCATTTAGACTTATCACACAATAAATTCACAGGTTCAATCACTTATGTTCACTTGGAAGGCCTAAGAGAGCTGGTCCAAATTGATTTACAGGACAACTTATTTGATGGAAACATCCCTTCTTCTCTTTTTGCACTTCCATTGGTACAAAGCATTCAACTTTCCAACAACCATTTCCATGGCCAGCTTGATGAATTTTCAAATATCTCATCCTCCGTCTTAGAGATCCTTGATTTAAGTAGTAATGATTTAGAAGGGCCCATTCCTCTATCTATTTTTAATCTCAGATCACTGAATGTCCTCAAACTATCTTTAAACAAGTTAAATGACACATTGAAGCTAGATGACATTAAGACACTTGAAAATCTAACTACACTAGCCCTTTCACATAACAACTTGTCAGTGGAGACAAATGAGACGGATAAAGGCTTTGTATCTTCATTCCACAATATGGGCAGTTTAGAGTTGGCTTCCTGCAATCTGACACAGTTCCCCAGTTTTTTGAGAAACCAATCCAAAATAGTCACTCTAGACCTCTCAAGTAACCATATTCGAGGATCTATACCAATATGGATATGGCAACTTGACTCTCTAATTGAATTAAATCTTTCTCACAATTTTCTCAGCAGTTTAGAAGGATCTGTTCAGAACACTGGTTCGAATCTGAGGCTCCTTGACCTTCATGCTAACCAACTCCAAGGGAAGCTTCAAATATTTCCAGTGCATGCCATTTATTTGGACTATTCAAGCAATAATTTCAGTTTTTCTATTCCGTCAGATGTTGATACTCGTCTGTCTTCCATAATTTTTCTGTCTCTGTCCAAAAATAATTTATCTGGGAGTATTCCTCAATTCTTGTGCAATAGTTCACAGCTGATAGTTCTGGATGTTTCTTATAATAACTTCGAATGGAGAATTCCTGAGTGCTTAACAAAGAGTGTGACAATTAAGGTATTAAATCTGCAACACAACAAGTTTAGTGGCAGCATTCCAGATACGTTTCCAGTATCTTGTGCTCTAAGGACTCTGAATCTCAATAGTAATCTATTGAAGGGGCCAATTCCCAAATCCCTAGAAAATTGCTCATCATTAGAGGTGTTTGATCTTGGAAACAATGCGGTAGATGATGGATTTCCATACTTCTTAAATTCAATATCCACATTTCGTGTCCTGGTTTTGAGGAGAAACAAATTTCGTGGTCACATTGAATGTCCTGATGCTAACAGAACTTGGCCAATGCTTCAAATTATTGATGTGGCTTTGAACAGATTTAGTGGTTTACTTCCAGGAAAATGTTTCAAAACATGGAAGGCTATGAAGCTTGACGAATATCATCATGTATCAAAGTTCAATGACATAGGATCTGATGTCCTTACATTTGGTGGTATATATTATCAGGATTCTGTGACACTTACAATCAAAGGTTTGGAGTTGGAGTTTGTTAAAGTCCTAAATCTCGTCACATCTGTTGACTTCTCATCCAACAATTTTGATGGAACAATACCTAAAGAGCTTATGGATTTTACTGGACTTTATGCTCTCAACTTGTCTCATAATTGTTTAACAGGCCAAATCCCTTCATCTATAGGGAATTTAACACAGCTTGAGTCATTGGACCTGTCAAGCAACAATCTTGGTGGTGAAATTCCCACACATCTTGAACTTTTAAATTTCCTCTCAGTCTTGAACCTCTCATCTAATCGTCTGGTTGGAAAAATCCCTGTAGGTAGGCAACTTCAAACATTTGACCAATCTTCCTATACTGGTAATGCAGATTTATGTGGAAGTCCTTTGACTAAAAACTGTAGTGATGAAATACCTGGGCTGTCAACCTCAGCAAATGCAAGGTCGCACGCAACTGGTGAAAATATTTTGAGGGCTGAATTGGGGTTTGTTTTAGGCCTCGGACTTTTCATTGTTCCCCTACTGTTTTGGAAGAAATGGAGGGAAAGGTACTGGAAGCGTGTGGACTCAATTCTGTGCGGCATCTTCCCACAACTGAATCTTGAATACGAAACCCGTGGAGGACAAAGCTATCAAGTATTAAGGTGGAGGCCTTAG