Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13398 LG3 27605279 27606563 PREDICTED: trihelix transcription factor GT-3b-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   protein binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, sequence-specific DNA binding, protein binding, identical protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
A/G,* 27605332 synonymous_variant p.Gln18Gln
C/A 27605495 synonymous_variant p.Arg73Arg
G/T 27605536 missense_variant p.Lys86Asn
G/C 27605895 intron_variant
G/A 27606089 synonymous_variant p.Gly131Gly
G/T 27606135 stop_gained p.Gly147*
G/A 27606191 synonymous_variant p.Lys165Lys
G/T 27606264 missense_variant p.Gly190Trp
G/A 27606349 stop_gained p.Trp218*
C/T 27606413 synonymous_variant p.Thr239Thr
A/T 27606475 missense_variant p.Gln260Leu
C/T 27606539 synonymous_variant p.Asn281Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13398.1
MEGRHLHHHHRQQQQQQQQQHQQHQHQHHHSHNITTSANVDATDRFPQWSIQETKEFLVIRAELDQTFMETKRNKQLWEVISNRMKEKGFLRSAEQCKCKWKNLVTRYKGCEAIEPEAMRQQFPFYNELQGIFASRMQRMLWAEAEGGSKKKVVQLSSEDEEEGKEESEGDQKGSVMKKKKKGKMVIGGGSGSSRNMESLKEIMEEFMRQQMQMEAQWMEAFEARENERRMKEMEWRKTMEALENERMMMDQRWREREEQRRIREELRADKRDALITALLNKLTREQM*


CDS Sequence:
>Vu_13398.1
ATGGAGGGTCGTCATCTCCATCACCATCACCGGCAGCAGCAACAGCAACAGCAACAACAACATCAGCAGCATCAGCATCAGCATCACCACTCTCACAACATCACAACCAGTGCTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAGGAGACAAAAGAGTTCCTCGTGATCCGTGCGGAGCTGGATCAGACTTTCATGGAGACAAAGCGGAACAAACAGCTTTGGGAAGTCATCTCCAACAGGATGAAGGAAAAGGGTTTCCTTAGAAGTGCAGAACAGTGCAAATGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGGGTGTGAAGCGATAGAGCCAGAGGCGATGAGGCAGCAATTCCCGTTTTACAATGAGCTTCAAGGGATTTTCGCATCAAGGATGCAGAGAATGTTGTGGGCAGAAGCAGAAGGAGGGTCGAAGAAGAAGGTGGTGCAGCTTTCATCGGAGGATGAGGAAGAGGGAAAGGAAGAGAGTGAGGGAGATCAGAAGGGTAGCGTGATGAAAAAGAAGAAGAAGGGGAAGATGGTAATAGGAGGAGGGAGTGGTAGCAGTAGAAATATGGAGAGTTTGAAGGAGATCATGGAGGAGTTCATGAGGCAACAGATGCAGATGGAGGCACAGTGGATGGAGGCGTTTGAGGCAAGGGAGAACGAGAGGAGGATGAAGGAGATGGAGTGGAGGAAAACCATGGAGGCATTGGAGAATGAGAGGATGATGATGGATCAGAGATGGAGAGAGAGGGAAGAGCAAAGAAGGATTAGGGAAGAACTTAGGGCTGACAAGAGAGATGCTCTAATCACAGCACTTCTCAACAAGCTCACAAGAGAACAGATGTAG


Promoter Sequence:
>Vu_13398::LG3:27603279-27605279(+)
TTGATAATATTATTTTAATGATAACAAAATTGCATGTAAACCAAGATTGATCAAATGTCATGTTTTATCATATGAGTAACTATATAATATAGAAAGGATTAAAAAAAAAAATCTAGCCTTCCATAATAAGGTTTGAATCCAATGAAAACCTAATTCTTCTTGGGTGTTTGCAAAATTTTACTATTTAATTATGATTAAAAGAGAATTAGGTTTAGTTTGGAATCAAAATTTAAAGTTTATTTACTATGAAAGAAGAAAAAAAGTTATAATAAATTGAAAAATGATTCTTTGAAATATCAAAATTTTTACATTAATTTGATCTTATCTTTTTTTACTTTTTACTTTCTTTTTTCTTGAAAGAATACAAAAGTTTACACTTTTAGGACTATTTTACCCTTATAATATGTGTCAAATAAATGTAAAAGTGTGTCATAATACTATTATTTTAATATATTTACTTTAATAATTTAATAAGAAGGTATTTAAATTTGAAGTATCTTATAATTTTTTATATTTTTAATTGAAATTCTATTAAAAAATTGGTTTGATTGAGTATTCAAAATATTTTTTTTATTTTTTATATAAATATTTTGTTGTTTGATTTTGTTAATAGTAGTTGATATGATTGTTATTTTTGCTTTTCTATGTCTAATTTGTCGACAAATGAACATCTTTATTTCTCTACAAAAAATTTCTCTCTCATTGAATAACTGATTTTTTTTAAGAAGAAACAAGTAATTGAAAAAAAGAACTAAAATTTAAAGTAAAGATGAAAAAATAAAAATATTTGTGATACTATTTTAGTTTAAATATATAATTAAACAAAAATTTTCTATAAATCTGAGTTAAGATTATATAAATTTATAAAGTATTTAAATTTGAAACATGGACGAAAAGAGGGAGAGGAGAAGGAATAGTTTTTCACTTTAAACTTTCAGTTTAGGATTTTGGAAATCCATGCAGAAAAGTATGTATATGATAAATTTGAGGTTACATCCTGGCTATTACAGTCGCCAACCAACCCTTTTTCTATGTCACCATCCCACGAGGGCAAAAAAAGAACGCGCAGAAAGTTAAATAAAGCATTACACAAAACACAATAAAAGCAAATTAAAGAATCTTTGATATCATTTCTTTATACATTATTAAATGTCTCATTGGACAACAATAATACACTACAACTTAAAATATATTTATAAATACAAAATAAATAAGTACAACTTCAAATTTATTTGTATGATAATAGAAAAAGAAAACTTGGTATGGAAGTTGCTCGGATTAATAAATAGTAAATGTGCATTAAATAAAGCGCGGGGAGTTATACTTTTGGTGTCAGCGTGACGAAACTTTGACGCAATGGGAACGCAATAAAATAAACAAAATTTAATATAAAGCGAAACAGAGACAAAGTTTCCGCGTAGAGAGATGAGTCTCAAATAATTTAAATTAATAAAAAATAAAAAGAAAAAGAAGAAAATTTCAATTTTTAAAGAATCCCACAGATAAGACATACCTAATTTATCGATGAAACGTCAATTTTGTGTCTAATGTTTATTAATATTATTAATTTATATAATAATTGGGTAAAAGACCTTTTAAATTATCAAAAAGAATTGTTTATTAATTAACCATTGTTGTTATTAGTTAGGAATGAGAAACAATATAGATTTTTTATCTTTTAAGATTTCAGTCCTTGAAATAAAGTAACACTTTGGCTTGGACACCTAAGCTAAAGAAAATCTCTCTTTTCTTTTCTTCTTTTTTTTCTCTCTTCTTTATTACGCGATTCACACCTGATGTTCACACCACACCTCTACCTACATATATATTCTCTTCATCTTTTTCTCTCTCATCTTTTGCTTCTCTCTCTATCCTCCGTAACCAAAACACACTCTTCAATAGCTTTTTTCTACATCATTCAGAGCACTCCTTCATCCTCTTCTATATTGGATTTTTGAATCTCTGGCTTTCTAGTTTTGGTTTTCGTTTTCAATTTTTCA


Gene Sequence:
>Vu_13398(+)
ATGGAGGGTCGTCATCTCCATCACCATCACCGGCAGCAGCAACAGCAACAGCAACAACAACATCAGCAGCATCAGCATCAGCATCACCACTCTCACAACATCACAACCAGTGCTAACGTGGATGCCACGGATAGGTTCCCCCAATGGAGCATCCAGGAGACAAAAGAGTTCCTCGTGATCCGTGCGGAGCTGGATCAGACTTTCATGGAGACAAAGCGGAACAAACAGCTTTGGGAAGTCATCTCCAACAGGATGAAGGAAAAGGGTTTCCTTAGAAGTGCAGAACAGTGCAAATGCAAGTGGAAAAACCTCGTTACCCGCTATAAGGTATTTTTATAACATTCATCTATACATATATATAATATATACATGTCGTGTTAATCACATCAACCCAAATAAATCTCGTGTTCTTATTATGAATCGCATGTCTTTGTCCTTTTCAATCCCACCCTTTCACGTGTTTAATTCTAATCAGTGTCTGGTTCAAGGCTGTCTCATCATGTTCACGATTCCGATTAATATATCTGGTTTAAGATTACCACGTGTTCAAGATTTTGATCGGTATCTGGATTAAGACCGTCACTTGTTTATGATTTTTCAGTTAACATATATCTATGGGTCTGGGGTTTTGAAGAATTGAATAGAATTTCTTTGAATGATAGTTTAATTAATAAATGTATGTTTTGATTAAAAAAATGGGTTTTATGTAGTGATAGAGTACTTGTTTTGTTGTTGAGATTTAAAGGGGTGTGAAGCGATAGAGCCAGAGGCGATGAGGCAGCAATTCCCGTTTTACAATGAGCTTCAAGGGATTTTCGCATCAAGGATGCAGAGAATGTTGTGGGCAGAAGCAGAAGGAGGGTCGAAGAAGAAGGTGGTGCAGCTTTCATCGGAGGATGAGGAAGAGGGAAAGGAAGAGAGTGAGGGAGATCAGAAGGGTAGCGTGATGAAAAAGAAGAAGAAGGGGAAGATGGTAATAGGAGGAGGGAGTGGTAGCAGTAGAAATATGGAGAGTTTGAAGGAGATCATGGAGGAGTTCATGAGGCAACAGATGCAGATGGAGGCACAGTGGATGGAGGCGTTTGAGGCAAGGGAGAACGAGAGGAGGATGAAGGAGATGGAGTGGAGGAAAACCATGGAGGCATTGGAGAATGAGAGGATGATGATGGATCAGAGATGGAGAGAGAGGGAAGAGCAAAGAAGGATTAGGGAAGAACTTAGGGCTGACAAGAGAGATGCTCTAATCACAGCACTTCTCAACAAGCTCACAAGAGAACAGATGTAG