Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13394 LG3 27488387 27491176 PREDICTED: myb family transcription factor PHL7-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity
SNP Position Effect Amino acid change
G/A 27488520 downstream_gene_variant
C/T 27488595 downstream_gene_variant
T/A 27488660 downstream_gene_variant
C/G 27488669 downstream_gene_variant
C/A 27488687 downstream_gene_variant
T/C 27488697 downstream_gene_variant
A/T 27488703 downstream_gene_variant
C/T,G 27488752 downstream_gene_variant
G/A 27488763 downstream_gene_variant
T/A 27488982 downstream_gene_variant
A/G 27488983 downstream_gene_variant
A/G,* 27489006 downstream_gene_variant
C/T 27489118 downstream_gene_variant
G/A 27489143 downstream_gene_variant
T/C 27489250 downstream_gene_variant
G/A 27489275 downstream_gene_variant
A/T 27489411 downstream_gene_variant
G/A 27489522 downstream_gene_variant
T/C 27489523 downstream_gene_variant
G/C 27489578 downstream_gene_variant
T/C 27489784 downstream_gene_variant
C/A 27489840 downstream_gene_variant
C/T 27489867 downstream_gene_variant
A/G 27489982 downstream_gene_variant
T/C 27490166 downstream_gene_variant
G/T 27490250 downstream_gene_variant
G/A 27490292 downstream_gene_variant
G/T 27490301 downstream_gene_variant
G/T 27490331 downstream_gene_variant
T/C 27490427 downstream_gene_variant
T/A 27490786 downstream_gene_variant
C/G 27490929 missense_variant p.Ala154Gly
T/A 27490960 synonymous_variant p.Pro164Pro
G/C,A 27491017 synonymous_variant p.Ser183Ser
T/C 27491036 missense_variant p.Ser190Pro
A/T 27491038 synonymous_variant p.Ser190Ser
C/A 27491088 missense_variant p.Pro207Gln
G/T 27491090 stop_gained p.Glu208*

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13394.1
MGSSRSRASATAKERLRWTQELHDRFVVAVNRLGGPDRATPKGILKGMKTMGISELSIYHVKSHLQKYRISKLIPESSTRGKVEKRSISDILPNFSSISALQLKELLQMQKEVQNRLGDKTQVARSMKEKVEAQGRYMERLGQSSEMKTRTGKACKAFDSSTTAPLPSLSEESESLKSQSEKEHESVKKQRISEEGVFPLSFEHASSTPPEFYNQTWNLPWSQLAAACLSTLDPSFIF*


CDS Sequence:
>Vu_13394.1
ATGGGTTCCTCTCGCTCACGTGCCTCTGCCACCGCCAAAGAACGCCTACGCTGGACACAAGAACTCCATGATCGCTTTGTAGTGGCTGTAAATAGACTAGGTGGCCCTGATCGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGACTATGGGTATTTCAGAGCTAAGCATTTATCATGTCAAAAGCCACTTGCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCTCCACAAGAGGAAAAGTTGAGAAGAGAAGCATATCAGATATACTTCCAAATTTTAGCTCTATATCTGCTCTTCAACTAAAGGAACTGCTTCAAATGCAGAAAGAGGTGCAAAATCGCTTGGGTGATAAAACACAGGTTGCGAGAAGTATGAAGGAAAAAGTTGAAGCACAAGGAAGGTACATGGAGAGACTTGGACAAAGCAGTGAGATGAAAACAAGAACTGGAAAAGCATGCAAGGCTTTTGATTCTTCTACAACTGCACCTCTGCCTTCTCTTTCTGAGGAATCCGAATCACTGAAATCACAGAGTGAGAAAGAGCATGAATCGGTCAAAAAGCAAAGGATTTCAGAAGAGGGTGTTTTTCCATTAAGTTTTGAACATGCATCATCAACCCCACCAGAATTCTACAACCAAACATGGAATCTTCCTTGGAGCCAGCTTGCAGCAGCATGCCTATCAACTTTGGATCCCAGTTTCATATTTTGA


Promoter Sequence:
>Vu_13394::LG3:27486387-27488387(+)
GTTTCCAATAAATATTAACAATTAGTAAAGAGTGTGTTGGGCGTAAGCTTGATGGCTTTTTTTAAGTTCGGACACTTTAGCTGTTACTTTTGCTATTCCCAAGAAGATAAATTGAAACAAAGTAGTATTCTAAGATATCTGTACCATGATGTCTGCTTTTGTATGTTATTGCACAACTAGTTCAAGCAGTTGTCTTCCAGTGTATGCAAAACCATGCGAGGCATGCTGCATGTTCCATTTCTGATGTCATTCCTGTACATTTATATGCAGAGATCCAATGATGGGCAAGTTAAAAGCAACCCGAAGTTTGCTGCAGATGAGGGTTACGAGGAGGATGAAGATGAGCACAACGAAACACTCTGTGGAAGCTGTGGTGGAAACTACAACGCAGACGAGTTTTGGATTTGCTGCGACATATGTGAGAGGTGGTTCCATGGGAAGTGCGTTAAGATCACCCCTGCAAAGGCTGAGGGCATAAAGCAGTATAAATGTCCATCATGCAGCCTGAGGCGTGGCAGGCCCTAGAGTGAAGACTGTGGAAAGGGTGCATGTGAGGTGAGTGTTGTTTCGTGGCTTACAAGATACTGTAATTTTGTTACATCACTTACAGAAGTTCATGTAATGGCTAAATTTAGTAGGGATCAAGTTTCTTTTTTACCAAGATGAACGGTTGGTGTATGATACACAGTACAGAATAGGACATGACAAATTTTAATTTCATGATTAGTTTATATTTAGTTGAATATTGCTTGAATTTATATTGTAACTTTATTTTAGTTTTTATCAGAGAAAACAACATTTTCTCCTCCACAGTTTTTTCTAATCCAACTTAAATTGTGTTGTTGCATGATGGGTTGATGAAACGATTGTGTGTGCATAGATGACTTCAACAAAAAAGAAACTGAATTATGTGTGAAGTAAGACGTGAAATTTTGATTTTCTGTCAACTTTGTCTCTTTCTATTTACCTATTCCTAAAAGGCAGGACGCATGTGTGGTGAACTTGAAGGTGAAATGGATTTCTATGGGACTTTAGTTTTTCTGTCACTGAGGAGAGCTCATTTTAACATCCTGAAATGCTTTTTGTTAAATTTAACGTATGATTTCTTAAGAGTGTGACCTTAGATTTTGATCGATTTCGATTATTCATTGTAGAATAAATATTGTTAGGAGAGCTTCTCGTTCTATCCTTTGTATTATGAAAAAAATGAAGTTTCTTATTTGAATAATAATATGCTTGGCTAAAATAGCCTTTTGTGGCTTCTATACTTCTGAACATTTGTTTTAAATCTAGTTTCAAGGTTTTGAAATTTTTAATTTGGTCTCAATTTTATCAAACTGAAATGTTAGAGAGTTGAGAGATCCGTGTATAGCAAAAAGAAAAGGAAAAACAAATCAAAGGACTTACAACCAATGTCTCCACCATCTGTTTCTGTTTTCAACAGACAATAATTTCCGGATGTTATAATTTTACTCTTTATTAAAAATGTTTCTAAATTTTCAACCCAACTTATAGTGATCACTATTTTCTATCTCATGAACAAATTTAGTAAAACAATCTGGTTTTCCTCATTCTAAACCATTATCCAAATGCATTCACAACTTTTTACTTCTATGCAAGTCACTTGAGGAAGCAACATGGAATAGACTAATGCCAAATGAGGCAGTGATGAAAATGGTATTGAGAAGGAAACTACGTGTGGTATCTGTAAAGAAAGACATTGACTGAAACATAGGCATTCTCGCCATCAAATCAATAATTCCCATTGGGACAAAGGAATAAACCAGAAGCATAAACACCAAAGGTTAAGTGTGAGAGTTGGACTTTTTGGACAACTATCGACAGTTAGCAGAATCTAAGGAAATGCAATGCAGCTTAGTTGACATCGCCACCTTGGTTAATTCTATGTGTTTTGTCCTTGTTGCACCCTTCTCTTCTCTGCTATAATCCTCCTCCTTACAATCCCTTTGCTTGGGCCTTAGACCCCAAAAGTTGAGCTA


Gene Sequence:
>Vu_13394(+)
ATGGGTTCCTCTCGCTCACGTGCCTCTGCCACCGCCAAAGAACGCCTACGCTGGACACAAGAACTCCATGATCGCTTTGTAGTGGCTGTAAATAGACTAGGTGGCCCTGATCGTAAGTCCTCCTTTGCATCTCGATAATGACTCTTAATAATACCATGCATCATCATATAATAATGGTGCAAAACTGTGGAACTTCTTTATCAATGAACTTCTATATGAACTTTATCAATCTTTTGGGTATTGTTCAAGTTTGATTCTTGGTGAAAATAATCTTCAATCAAACCTTACTTTCTTCTCTGTCGAACCAGATTGGGACATCTTCAAAAAAGTCTGGAACTTGTTTTATGAAATGAAAAATAGTCAAACAAAAGTTAAGGTTTTTATGATTCTTTTATTGTTAGATTTCTTAATTATGAAATCTGTCAAGTGATGAATCCTTTGTTGATGGCTTAACCATTTATGTTGGAATAACAATTTTTAGCTTTCGTTAGTCTTTAGAAAATAATAATGGTTATAGAGAAATAATGAAGAGGAACAGAGAATTTAGGTCACTAGAGATACTAAGCAGAAAAAAATATTGCGTAATTTTTATTCGTATAAAAAAACAAATAATAAAGGTATTAGATAAAAGTGTCGAGAGAGAATGTGATGATAAATAATATTCTTAAGAATTTGAGCTATAATCAAGCTCAATAAATAATCGTGTTAATTATAAAATCAACCTTAACTTTCATTGTTGATTAAAAAAAAAATCGTGTTTTCGTGCAATACTTTAAAATCTGTGGTTGATTTTTCTTGTTTCTTGGATTATTTAGAGAAAGGAATTTATTAAACTTCTTTAAATTATACGTTTTTTTTTTTGTTAATTTCTTTGTATACTTGCATTCTGCCATTGTGTTTTAAAGACGGGAAATATATTCTATATTTAGTTTTAAAACGCACTTTTTTATTCTTTTGTAAAAAAGATGTTTGTTTTCTTAAATAAGTGATTTTTAAAATTACCTTTTTAAAAAACAAAAAACACATATTTTAAATTTAACGAAACTCATTCAATAACATATAATTTAGTTGGAGTGATAACCCATAAAATTAGTTAGATGAAATATTTGTTAGAGAGAAATTGATAGTTACATCAGTAATTTGTTTGAAAAAAGCTTCTCCATAAACATTTTTAAAAGAAGGAAAAAATAAGTTTATTAATATACCGAAATTAACTTACATATAAATTAACATAAAATTTTGAAGAAACTAATAGCTAATAAATTGTATAAATGGCACTAATTTGATTTGTTTGTGTAGGGGCAACACCAAAAGGTATATTGAAAGGAATGAAGACTATGGGTATTTCAGAGCTAAGCATTTATCATGTCAAAAGCCACTTGCAGGTTTGAATTACTTTATATTTAAATACCTTAATGCTAATTTCATTTTTCAACTGAAATTTTAAATAAATCTATTTTAAAATTAAGATTACACACATCATGTTTGAATTGGTTTATATCCATATCTCAAAGTTAATTGTAGTTTTCAACTGAAATTAATATATTCCGGACATGATATATTTAATGTTTATATAATATTAATAAATACTTTTAAGCAGTCTTTTCAATGTCAAATCAATTTCACCTAGCAAATGTTTTAATACACTTTGAAATACTGAGATCCATTCACAATTTTAACATGCTTACATCAACAAAATGGATGCTAATTCACATTTTTCATATCATTTATTAAAAATGTCATACATTATTTTCAACAAAAACAATTTTTTTACAATAATATAAAGACAGAAATCAGATTTAATTCAATATAAATAAATACAAAATTGTTAGAGTAATTGAATAACACATATTTAGGAAACTTGAACTTCAAAAGGCCATTATTCATATCTAGAAAGTGAAACCAGATAATTAAGTTGAAAAATCACAGTAAAGTTAATCATGTGGAGAAATCTGATAAGTTGAACATGGATTTGTTCAGAAATACAGGATCTCCAAATTGATTCCAGAGTCCTCCACAAGTAAGTTTCTTCCTTGAGTATTGATGCTAATATAGCTCCAAATAACACCAAATTCATGTGAATTTTCTAAATTATCTATGAAGGAGGAAAAGTTGAGAAGAGAAGCATATCAGATATACTTCCAAATTTTAGCTCTATATCGTGAGTTAGTAATTTTATTCAACAACAGTATTTTCTTTTTCTCACCTTTTCAACTTTCAGTTTTGCATCCTCCAACTTTTCAGCAATGATTTTACTATTAATGTTTGTAATTGGCAGTGCTCTTCAACTAAAGGAACTGCTTCAAATGCAGAAAGAGGTGCAAAATCGCTTGGGTGATAAAACACAGGTATTTCTTTTCAGTTTTGACCAAGATAGAGAGAATATCTTCAATGATTTTTTTTATTTTTTATTTTTAATTTTGTTTGATTGGCTTAAAGGTTGCGAGAAGTATGAAGGAAAAAGTTGAAGCACAAGGAAGGTACATGGAGAGACTTGGACAAAGCAGTGAGATGAAAACAAGAACTGGAAAAGCATGCAAGGCTTTTGATTCTTCTACAACTGCACCTCTGCCTTCTCTTTCTGAGGAATCCGAATCACTGAAATCACAGAGTGAGAAAGAGCATGAATCGGTCAAAAAGCAAAGGATTTCAGAAGAGGGTGTTTTTCCATTAAGTTTTGAACATGCATCATCAACCCCACCAGAATTCTACAACCAAACATGGAATCTTCCTTGGAGCCAGCTTGCAGCAGCATGCCTATCAACTTTGGATCCCAGTTTCATATTTTGA