Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13337 LG3 26549886 26551520 disease resistance protein RPM1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 26549905 missense_variant p.Lys7Ile
G/A 26549909 missense_variant p.Met8Ile
C/G 26549920 missense_variant p.Ala12Gly
G/A 26549936 synonymous_variant p.Gln17Gln
A/G 26549939 synonymous_variant p.Leu18Leu
G/A 26549952 missense_variant p.Glu23Lys
A/G 26549953 missense_variant p.Glu23Gly
A/T 26549987 missense_variant p.Leu34Phe
G/A 26550002 synonymous_variant p.Glu39Glu
T/C 26550009 stop_lost&splice_region_variant p.Ter42Argext*?
C/T 26550023 intron_variant
A/T 26550068 intron_variant
G/A 26550090 intron_variant
G/T 26550157 stop_gained p.Glu54*
T/A 26550186 missense_variant p.Phe63Leu
T/A 26550196 missense_variant p.Phe67Ile
T/A 26550319 missense_variant p.Phe108Ile
G/T 26550431 missense_variant p.Arg145Ile
C/G 26550615 intron_variant
C/A,* 26550724 intron_variant
G/T,* 26550737 intron_variant
G/C,* 26550738 intron_variant
C/T,* 26550742 intron_variant
G/T 26550743 intron_variant
A/T 26550748 intron_variant
T/G 26550789 intron_variant
T/G 26550815 intron_variant
G/A 26550816 intron_variant
C/A 26550820 intron_variant
A/C 26550841 intron_variant
A/G 26550842 intron_variant
G/A 26550848 intron_variant
A/G 26550849 intron_variant
G/A 26550875 synonymous_variant p.Glu166Glu
C/T 26550877 missense_variant p.Ala167Val
C/T 26550885 synonymous_variant p.Leu170Leu
G/A 26550905 synonymous_variant p.Ser176Ser
G/A 26550911 synonymous_variant p.Leu178Leu
C/T 26550914 synonymous_variant p.His179His
G/C 26550933 missense_variant p.Glu186Gln
G/C 26550948 missense_variant p.Glu191Gln
A/G 26550949 missense_variant p.Glu191Gly
C/T 26550960 synonymous_variant p.Leu195Leu
C/T 26550984 synonymous_variant p.Leu203Leu
T/C 26550987 missense_variant p.Cys204Arg
A/G 26550995 missense_variant p.Ile206Met
G/A 26551026 missense_variant p.Val217Met
T/C 26551027 missense_variant p.Val217Ala
G/T 26551028 synonymous_variant p.Val217Val
A/G,* 26551035 missense_variant p.Lys220Glu
A/C 26551071 missense_variant p.Asn232His
T/C 26551075 missense_variant p.Leu233Ser
G/A 26551082 synonymous_variant p.Arg235Arg
C/T 26551113 synonymous_variant p.Leu246Leu
T/G 26551136 missense_variant p.Asp253Glu
T/C 26551139 synonymous_variant p.Cys254Cys
G/A 26551148 synonymous_variant p.Leu257Leu
G/A 26551151 synonymous_variant p.Glu258Glu
G/C 26551180 missense_variant p.Ser268Thr
T/C 26551187 synonymous_variant p.Leu270Leu
G/T,C 26551196 synonymous_variant p.Leu273Leu
G/A 26551201 missense_variant p.Gly275Glu
C/A 26551228 missense_variant p.Thr284Asn
G/C 26551262 missense_variant p.Leu295Phe
T/A 26551306 missense_variant p.Val310Glu
G/A 26551314 missense_variant p.Asp313Asn
C/A 26551361 synonymous_variant p.Leu328Leu
G/C 26551372 missense_variant p.Trp332Ser
A/G 26551496 missense_variant p.Ile373Met

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13337.1
MSIRTNKMKAVAVLMKQLTTSREKFHERGRDESLDGELEKLWMLDEDMEGICKRIKDSAHNLLSKDVFGDSYKEVDHRGDKISHSSQQLVHPHEKKRWTSDDFNLLGLPSRFCLLSLLIFPENAIIRKRNAINLWIEEGLIENTEKKTAEELGVDVIDNLLKFKNLEALQLGRWQDSPLHHIEVGSEEFLRELRTLKQLKYLSLCGISRIFELPSSIVELKSLVILDLKACHNLERLPDDISSMKSLTHLIMSDCCLLEGMPKGIEKLSNLQVLKGFLITTSKKTPCRISDLVNNLRKLRRLSIRIGYEAVINDGEFESLASFSTLEHLKISWSVSDPGYVKIPILLPSGLKKLHLECFPGKSLLRCFTRTVLIPRELNIT*


CDS Sequence:
>Vu_13337.1
ATGTCAATTCGAACAAACAAAATGAAAGCGGTAGCTGTGTTGATGAAGCAGTTAACGACATCAAGGGAGAAATTCCATGAAAGGGGAAGAGATGAATCATTAGATGGGGAGTTGGAGAAGTTGTGGATGCTAGATGAAGACATGGAGGGCATTTGCAAGAGAATCAAAGATTCTGCTCACAATTTGCTTTCAAAGGATGTTTTTGGTGACTCATATAAGGAGGTGGATCATAGGGGTGACAAAATATCTCACTCATCACAACAGTTGGTGCATCCCCATGAGAAGAAGAGGTGGACTTCGGATGATTTCAACCTGCTAGGCCTTCCATCCAGATTTTGCCTGCTGTCTCTCCTAATTTTCCCTGAGAACGCTATCATAAGGAAAAGAAATGCAATTAATTTGTGGATTGAAGAGGGTTTGATTGAAAATACAGAGAAGAAAACAGCAGAGGAATTGGGTGTGGATGTGATTGATAATCTTTTGAAATTTAAGAATTTAGAGGCGCTTCAACTAGGGCGTTGGCAAGATTCGCCTTTGCACCACATTGAAGTTGGGAGTGAAGAATTCTTGAGAGAGTTGAGAACTCTGAAGCAGTTGAAATATCTGAGTCTGTGTGGGATATCAAGAATATTCGAGCTTCCATCCTCCATTGTGGAACTTAAGAGTCTAGTAATTCTTGATCTGAAAGCATGTCATAATTTGGAAAGGCTACCTGATGATATTTCATCAATGAAAAGTCTGACACATCTGATTATGTCTGATTGTTGCTTACTGGAGGGCATGCCAAAGGGGATTGAGAAGCTCAGTAATCTTCAAGTACTGAAGGGATTTTTAATAACCACTTCTAAAAAGACTCCTTGTAGAATATCAGATCTTGTTAATAATTTGAGAAAACTAAGGCGACTCAGTATACGTATAGGATATGAGGCCGTGATCAATGACGGAGAGTTTGAAAGTTTGGCATCTTTTTCAACGCTTGAACATCTCAAAATATCTTGGAGTGTGTCTGACCCAGGGTATGTCAAAATTCCTATCCTTTTGCCATCAGGTTTGAAAAAGTTGCATCTTGAATGTTTTCCTGGAAAGAGTCTTCTAAGATGTTTTACACGTACCGTTTTGATACCACGTGAGCTAAATATAACTTGA


Promoter Sequence:
>Vu_13337::LG3:26547886-26549886(+)
CGAAGCTTTTCTCTGTCATCCCTACTGTAGTCCCAATTGAAAAAAATCAGAAACACATGCCTTTAAAAAATTTTCCTTTGTAAAGAGTTGAGTCATTGACATATTCACCTTCAAGGCAAAGGTTCATTCAAGATCTCTTCAATTTCACCATCTTCACTAACCTCTCTAATTTCATCATTTGTATTTGTTGAATCATCATCTCTAAAAAAACCCTCCAGGCCAATTACCAATTCTTTCTGATGTCATTATGCTTGTGAAAATTAGATAAAATTATATACGACAAAAATTATAAAATGAAAACTCATTATAAAGTCATTTTTTTGTAAGAAATTGTTTAACAACTGAGTCTTTCTGATTTTTTTTCCAGGCCAATTACCAATTCCTTTGATGTCATTATGCTTGTGAAAATTAGATAAAATTAGATAAGACAAAAATTATAAAATAAAAACTCATTATAAAATCATTTTTTGTAAGAAATTGTTTAACAGCTAGTATTTCTGAATTTTTTCCAGGTCAATTACCAATTCCTTTATCTTGTGAAAATTGGATAAAATTAGACAAAAATTATAAGATGAAAACTCATTATAAAATCATTTTTTTGTAAGATTGTTTAACGTGTTTCTGATTTTTTCAATTGAGGCTACAGTAGGGATGACAGAGAAAAGATTGGAGTAAGAAAGAGGAAAGAGAAAGGGTTGAGAGGAATGAGAGAGGTGAGTAAGGGTTTGGGGGGTTTCTTTTTTTTTTTTTTAGTTTTGAGAATGAAAATTATTAAAATACCCTTAACCTTAAAACTTAGAATCCATGATATATAAGGATATTTTTGTCTACTAAAACCCGGTACACATTGCTAAAATGTACCAACTGAAAAACAGGCGTACGCGCGTTAGCAAACCCATATATATATATATATATATATATATATATATATATATATATAAATTATACTAAAAAATTTTGAAGGTAATGCCTCTTAAGAGCTGTTAAGGCAATAAAATTTTATGCAAATAACAATCATAACGATAATGATGAGACAATCATGGGATAATTATATTTAAAATCTTGAAAGTTTATATTAAATTTGCAATTGATGACTGTAGTAGTTTGTCTTGATGAACAAATATGGGAAGTGATTATGTAAATCCAGAGTGTGTGATGTGGTTTTAACTGTACTCTTCATATTCTTTTAACATTATTCTTGGGATAAGGTATCCAGGAGTCACTGACAAAATCCTTGTATTTTAGAGCATAAGAACAAATTTACAGATTCTCTTTGAAGGGAAAATCAAACTTTTTGGGATCATTAAAGTCGAAGGTAATCAAAGAATTACGTGAAACTTTTTGTGGTGTAATTCCTTCGTTCAAGTCATACTAAAACAGGAAAGTATGATGCCATGATTTGGCTTCCCTGCATATCAAGTATACTTTGCTTCAAAACTATCCTTAACTATATGAGATTGTTTTCTACTCGTTTAAAGCACCTTAACTATTTGAGATTGTTTTATCCACAAGAGGATTATCTTCCACAATATTTTGTTAACGTTTTCTTTCTCTTGAAATTCCTTCTGGTGTTTGTTTGGTAAGATGTACCTTAAGTTCCCTTTTGTTGCTTTTCATAATATATATGTTTATGTGTATACGTGCGTCTGTTTCTTTTCTGAAATTGATTATCATAATTTGTTAACGTCTAGTTTAACTTCGATTGTGCTATTTCGTGGAATCATATTTTTGTCGGTAGCAAGGTGTAACAGAAAGAGTTGGACGAGGTTAGCTGTTGGACTGAATACATTCTTAATCTAGCTTCTTTTGTCCCGATTATTTCAAAGGTTCAACTCCATTTTGTTATTGATATTAATTAGAAATAGTAAACTTTTATATAATGCTTCAAATGAGGGTTATAACTCCATATAAATCAAAATTGTAGTCCTGTCGGCAAAAAAGAATTTTGGAAGTAGGAAAAATTGGATGACATTGTGTATGTTTGTGTGTTTGTTGTAAAA


Gene Sequence:
>Vu_13337(+)
ATGTCAATTCGAACAAACAAAATGAAAGCGGTAGCTGTGTTGATGAAGCAGTTAACGACATCAAGGGAGAAATTCCATGAAAGGGGAAGAGATGAATCATTAGATGGGGAGTTGGAGAAGTTGTGGTTGGTTCTGAACAATATAAAGGATGTGTTTGTGGAAGTGAAGAAGAATTAAGAAAAACTGCTTGACACATTAGCAGAGGTGTATGGCCATCTTCGCAAGTTAGACCGCAGGATGCTAGATGAAGACATGGAGGGCATTTGCAAGAGAATCAAAGATTCTGCTCACAATTTGCTTTCAAAGGATGTTTTTGGTGACTCATATAAGGAGGTGGATCATAGGGGTGACAAAATATCTCACTCATCACAACAGTTGGTGCATCCCCATGAGAAGAAGAGGTGGACTTCGGATGATTTCAACCTGCTAGGCCTTCCATCCAGATTTTGCCTGCTGTCTCTCCTAATTTTCCCTGAGAACGCTATCATAAGGAAAAGAAATGCAATTAATTTGTGGATTGAAGAGGGTTTGATTGAAAATACAGAGAAGAAAACAGCAGAGGAATTGGGTGTGGATGTGATTGATAATCTTTTGAAATTTAAGGTGATTGTACGCTATGGTAGTAAGAAGGATCCCCTTGTCAATAAATTTCAAATTCTTCCTCACGTCCATAGTCATTTGAAGTTATATTTAGATCGAGATTTAGAGTATATTCGACCATCACGTTTACTGTTGGAAGTCCCACATCGACTAGAGATAAGACCAATTTATAATATATAAGTGAGGTGCAAACCTCACTCTACAAGCCGGTTTTGTGGGGTTGAGTTAGGTTAAAACCCACTTTCTAATATGGTATCGCTTGATAGAAAAAGAGTTACATTAGGTGGAGTTGATACAAAAAATTTTAGTTTACGTAATATTTTTAATATTGGTGCAAGTTATCTGAATTTTGGACAACAATGGATCACCGATCAATTGAAGAATTTAGAGGCGCTTCAACTAGGGCGTTGGCAAGATTCGCCTTTGCACCACATTGAAGTTGGGAGTGAAGAATTCTTGAGAGAGTTGAGAACTCTGAAGCAGTTGAAATATCTGAGTCTGTGTGGGATATCAAGAATATTCGAGCTTCCATCCTCCATTGTGGAACTTAAGAGTCTAGTAATTCTTGATCTGAAAGCATGTCATAATTTGGAAAGGCTACCTGATGATATTTCATCAATGAAAAGTCTGACACATCTGATTATGTCTGATTGTTGCTTACTGGAGGGCATGCCAAAGGGGATTGAGAAGCTCAGTAATCTTCAAGTACTGAAGGGATTTTTAATAACCACTTCTAAAAAGACTCCTTGTAGAATATCAGATCTTGTTAATAATTTGAGAAAACTAAGGCGACTCAGTATACGTATAGGATATGAGGCCGTGATCAATGACGGAGAGTTTGAAAGTTTGGCATCTTTTTCAACGCTTGAACATCTCAAAATATCTTGGAGTGTGTCTGACCCAGGGTATGTCAAAATTCCTATCCTTTTGCCATCAGGTTTGAAAAAGTTGCATCTTGAATGTTTTCCTGGAAAGAGTCTTCTAAGATGTTTTACACGTACCGTTTTGATACCACGTGAGCTAAATATAACTTGA