Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_13075 LG3 22700982 22702753 two-component response regulator ARR14-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 22701124 downstream_gene_variant
T/A 22701128 downstream_gene_variant
G/A 22701138 downstream_gene_variant
T/C 22701196 splice_region_variant&intron_variant
C/A 22701293 missense_variant p.Thr74Lys
A/T 22701331 missense_variant p.Asn87Tyr
C/A 22701341 missense_variant p.Ser90Tyr
A/G 22701361 downstream_gene_variant
C/A 22701366 downstream_gene_variant
G/T 22701381 downstream_gene_variant
G/A 22701432 missense_variant p.Val95Ile
T/A 22701433 missense_variant p.Val95Asp
G/A 22701459 missense_variant p.Asp104Asn
G/A 22701565 missense_variant p.Gly139Glu
C/T 22701567 stop_gained p.Gln140*
A/G 22701590 stop_retained_variant p.Ter147Ter
T/C 22701642 stop_lost p.Ter165Argext*?
C/T 22701801 upstream_gene_variant
A/C 22701829 upstream_gene_variant
T/A 22702009 upstream_gene_variant
G/T 22702057 upstream_gene_variant
G/A 22702062 upstream_gene_variant
T/C 22702082 upstream_gene_variant
C/A 22702088 upstream_gene_variant
G/A 22702174 synonymous_variant p.Gln244Gln
T/G 22702271 missense_variant p.Ser277Ala
G/A 22702450 upstream_gene_variant
G/C 22702465 upstream_gene_variant
C/G,* 22702477 upstream_gene_variant
A/G,* 22702479 upstream_gene_variant
A/G,* 22702528 upstream_gene_variant
C/A 22702535 upstream_gene_variant
T/C,* 22702556 upstream_gene_variant
C/A,* 22702559 upstream_gene_variant
A/C,* 22702565 upstream_gene_variant
T/C,* 22702580 upstream_gene_variant
G/A 22702643 upstream_gene_variant
T/C 22702704 splice_region_variant&intron_variant
T/G 22702720 missense_variant p.Phe321Leu
A/G 22702730 missense_variant p.Ile325Val
T/C 22702731 missense_variant p.Ile325Thr

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_13075.1
MGKISSEKKVFSEYPSNLKVLAIDTDPIVLEFIKKVCNEYCYEVITCTESLSAAIILQEKKSTIDLILMEVHMPHMDGYEFLLTTQEINVPKLMMSFDDSKKSVMKTIKLGACDYMIKPLHEDRLRNMWTHVVRKSMNEDKMRKNIRNSLEDDNQNSRFVFSSSDEISREVGNAGQSKKPRVVWTTDLHGKFVKAVNQLGLENAVPNKIQQLMNTPHLTRNHVASHLQKYRNVLKEKARREKERQPEPKREQQSVPDIQMDNHHAEEAFGFALSDPLSIYPTIAIPQNFPQTLDSECGIWSPYNAILAENEAMLQRNTNDNFGRNIDQRSIQ*


CDS Sequence:
>Vu_13075.1
ATGGGCAAGATTTCTTCTGAGAAGAAGGTTTTTTCTGAATATCCATCAAATCTTAAGGTTCTAGCCATTGATACTGACCCTATAGTTCTTGAGTTCATCAAGAAAGTGTGTAATGAATACTGTTATGAAGTTATCACATGCACAGAATCGCTATCTGCCGCTATAATTTTGCAGGAAAAGAAGTCCACCATTGATTTGATTCTAATGGAAGTTCATATGCCACATATGGATGGCTATGAATTCTTGCTTACCACCCAAGAAATCAATGTTCCTAAACTCATGATGTCTTTCGATGATAGTAAGAAATCTGTGATGAAGACTATCAAACTTGGAGCTTGTGATTATATGATTAAGCCTTTGCATGAGGATCGGCTGAGAAACATGTGGACACATGTTGTTAGAAAATCCATGAATGAGGACAAGATGAGAAAAAATATCCGTAATAGCTTGGAAGATGATAATCAGAATTCTAGATTTGTGTTTTCTTCTAGCGATGAAATTTCAAGAGAAGTTGGTAATGCTGGTCAATCAAAGAAGCCTCGTGTAGTGTGGACAACAGATCTGCATGGGAAATTTGTCAAAGCTGTGAATCAACTTGGACTTGAAAATGCTGTGCCAAACAAGATTCAGCAACTCATGAATACGCCTCATTTGACAAGAAATCATGTTGCAAGCCATTTGCAGAAATATAGAAATGTTTTGAAGGAAAAAGCTAGGAGAGAGAAAGAGAGACAGCCAGAACCAAAAAGAGAGCAGCAATCTGTCCCAGATATACAAATGGATAATCATCATGCAGAAGAAGCTTTTGGTTTTGCACTCAGTGATCCACTTTCTATTTATCCAACCATTGCTATTCCTCAGAATTTTCCACAGACTCTAGATTCTGAATGTGGAATATGGTCTCCATATAATGCAATCTTAGCAGAAAATGAGGCTATGCTTCAGAGAAACACTAATGATAACTTTGGCAGAAACATTGATCAGAGAAGCATTCAGTAA


Promoter Sequence:
>Vu_13075::LG3:22698982-22700982(+)
TTAAAAGAAATTATAGAATTATATATTAACAAAATAATTAAATTATCCTTATTATTATAAATTAATTTAATTTAATTATTAATATTAATTAAATTATTATTATAATTTATTATATACTGTTATAATTTATTATATACTACAAAACTTATCAAATATTAGTTTATTTTATATAAAATGTAGCTTGATATTTTATGATTACAAGACATCCCAAAATATACAAGAACATTCAAATCTTCATATATGTAGAAACAGAAATCCCAACATCAATAATAATTTATTTTGAAGTTTCTATTTCTTATATTATTTCACTCTCAAATTATTATATATTCACATATGAACAATAAAACTAAATAGAGGCTAAATGTCAGAAAATATATAACTTACCGAAAATAAAATTTTATTTGGTTTATATTTTTTTATTCTTCGCCTCCTGTATAAACGGGATATGATTATGAAAAGATAAGTGATCAAGAAACCAAGAATAAATGTTCAAATTTTAGAAAAATGAAATTTCACAGTAAATAAAGAATAAATTTCTTTTAAGAGCATTTATATCTATTTAAAGAAGATTTATATTTTATTATTCATTTAATTTAACCACTTTATTTAAATCTGTAATAAATTGTCTTCTATATTCTCTCTAATAACAGTTTTTCTCTAGAAAATTCTTCCACCGAAAAGGATTATTTAATACCACCTTGATGGAAAATTTATTTATAAGATTCGATCTAACGGATTATTTAATAAAAAAATATACACAATTTAAGAATGAATTCTCTTGCTATTTTTTCTTTTCCAATTCTTGCATTGCAGTTGCACAATATATTGTTTGGATTATTAAAAAAAAAGCTCTTTGAACGTCTCAAACGATTTTCTTAATAATACTATTCTTCTCCTAAACACCTACATATTTCCATCTATAATTATTTCCATTTTAAATTAAATTTCAATAACTTATAATCAGTATAAATTCAATGATTTAAAGTGTTCTGACGTAAATTTAAAATATAAATTATATATACAAATATATTTGTATTTAATACAAGTTTTAATTACATAAATCATATATTAAAAATTCTTGATGCAAATGAAGAACCATATAATGTATTATTCTTCATAAATTTATTTTTGTAATACGACCTCTAAATATGATATAAATTATTTTTTCAATAAGTTCACTTACTGTAAAAATACTTAACATTTAAAGGTAATAAATAAATAGACGAATGTAATATATTAATAATAACAAAGTATCCTTAATATTTAAGAAAATAATCAATGTCTAGATTTCTTTTTTCAACTAAATAGACTTTTTTATGAAAGAGAAGGCCTAATTCATTTTGTAAAAAATATATAGTTTCTCTTATTTAATAAAAATATGTTGTAATATTATTTTTTTCTTCTCTTAAAACTAATCAAACGTAGTCACATTCTTATTTAATTGAGATAATACTGTCACAATAATTTATTAAATCAGTACAAAAATACAATTTTCTTTAACTTTAATTCAAATTTAATCTAAATCTAGTTTTTCAAAATTTTAAAATCAAAATTTCAATCAATCAAAATGCATATTAATTAATAGATACCATTGATTGATTTTATAACAACTTACTGTTTTTTACTTGAATTTCTAATAAAATATTGTTTAATATTTTAATCTCATTGCATTTTCCAACTAAATCATTTAATTACTCGATTGTTATTTCCTCAATTAACTCAATGATCAATTAATCATTAGTATATTTTTACCCTTTTATTTATTTCTGAAACCTATATATTTACTTACTTATGTAACTAATATTAAATGTATGATAAAGAAATTGACTACATTGAAAAGAAAGAAAGAAAAAAACATGTGACGAAAGAGTAAATCAATTCCTGTAGGAATTCTCCCAACATTCATTGAATCAATTTTTAAAATATGATTTCAATTTGAAATATAAATCATTCTAAATTCACTTACTTTCTCCATTCTATGCTCAGACATTAGACAACAA


Gene Sequence:
>Vu_13075(+)
ATGGGCAAGATTTCTTCTGAGAAGAAGGTTTTTTCTGAATATCCATCAAATCTTAAGGTTCTAGCCATTGATACTGACCCTATAGTTCTTGAGTTCATCAAGAAAGTGTGTAATGAATACTGTTATGAAGGTTAGATATACAATATTACATTGTTTGCTTTTTCTTGAAGAAAGAATAATCTTTTTGTTTTGTTAATGATAATTTTATGTTGTCTGCAGTTATCACATGCACAGAATCGCTATCTGCCGCTATAATTTTGCAGGAAAAGAAGTCCACCATTGATTTGATTCTAATGGAAGTTCATATGCCACATATGGATGGCTATGAATTCTTGCTTACCACCCAAGAAATCAATGTTCCTAAACTCAGTATGTAATTAATTACTTCTCTATACTTTTGCTTAAATTTTGAACATGTTTTACTGATAATTAAGTTTAATTTGCAGTGATGTCTTTCGATGATAGTAAGAAATCTGTGATGAAGACTATCAAACTTGGAGCTTGTGATTATATGATTAAGCCTTTGCATGAGGATCGGCTGAGAAACATGTGGACACATGTTGTTAGAAAATCCATGAATGAGGACAAGATGAGAAAAAATATCCGTAATAGCTTGGAAGATGATAATCAGAATTCTAGATTTGTGTTTTCTTCTAGCGATGAAATTTCAAGAGAAGTTGGTAATGCTGGTCAATCAAAGAAGCCTCGTGTAGTGTGGACAACAGATCTGCATGGGAAATTTGTCAAAGCTGTGAATCAACTTGGACTTGAAAGTATGATTCTTCAGCCTTTGTTCTATCTACTTTTTCTCTGTTCATCCAATATGAATTTAATGCATACTACATGTATGAGATATGATCTGATCTGACATTCTCATCTGTCAGATGCTGTGCCAAACAAGATTCAGCAACTCATGAATACGCCTCATTTGACAAGAAATCATGTTGCAAGCCATTTGCAGGTTAGTTTTTTAGTTCATTTGATTTTCCATTCTTGCATCTGTTCAAAGTAGGTAAATTTTTGGTTCTTAGATTATGCAGATATAGTTTTTTACTACTGATCAAAGCTTATAATTGCTTAGTTTTTGCTATGAACTATTTTTTATGCATGATAATTAACATTATTGTGAATTTGATTGGCAGAAATATAGAAATGTTTTGAAGGAAAAAGCTAGGAGAGAGAAAGAGAGACAGCCAGAACCAAAAAGAGAGCAGCAATCTGTCCCAGATATACAAATGGATAATCATCATGCAGAAGAAGCTTTTGGTTTTGCACTCAGTGATCCACTTTCTATTTATCCAACCATTGCTATTCCTCAGAATTTTCCACAGACTCTAGATTCTGAATGTGGAATATGGTCTCCATATAATGCAATCTTAGCAGAAAATGAGGCTATGCTTCAGAGAAACACTGTGTCATTGGATTCATTGCAGCAGCAGCAGCAGCTGCAGCAGAACATGCAGCAGCAGCAGCAGCTGCAGCAGAACATGCAGCACAACATGCAGCAGCAGCTGCTGCAGAAGAACATGCAGTCTTCAGTGTTGCAACAGCTGCAGCAGAAGCTCCAGGAGCAGTTGCAGCAGAAGCTCCAGGAGCAGTTGCAGCAGCAGCTCCAGCAGCAGCAGCAGCAGAACATGCAGTCTTCAGTGATGCAGAATCAAGTTCCTCTGATAAATTTTCAACCATCTTCTGTGATAATTTCTGAAAATCCATATTTGGTGATCCAGAATGATAACTTTGGCAGAAACATTGATCAGAGAAGCATTCAGTAA