Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_13017	LG3	22259775	22261037	PREDICTED: scarecrow-like protein 3	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
G/A	22260096	synonymous_variant	p.Phe314Phe
G/A	22260157	missense_variant	p.Ala294Val
A/G	22260174	synonymous_variant	p.Thr288Thr
T/C	22260189	synonymous_variant	p.Lys283Lys
T/C	22260411	synonymous_variant	p.Thr209Thr
C/T	22260463	missense_variant	p.Arg192His
G/T	22260553	missense_variant	p.Thr162Lys
G/A	22260565	missense_variant	p.Thr158Ile
C/T	22260648	synonymous_variant	p.Ala130Ala
A/T	22260699	synonymous_variant	p.Ala113Ala
C/T	22260770	missense_variant	p.Ala90Thr
T/A	22260834	synonymous_variant	p.Ala68Ala
G/A	22260890	missense_variant	p.Leu50Phe
G/A	22260897	synonymous_variant	p.Leu47Leu
C/T	22260934	missense_variant	p.Gly35Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_13017.1

MLGSQYHLQGSKDWDEDGIKIIQLLNECASFTESGNFIDADTALYNLSHLASPDGDSMQRVATYFTEALAHCQLAKNLRGVPKVLRLVRALSTPEQQLLNQLFFDFYPFLKIAHTITNHTIIEAMRGETAINVLDLSPSNADQWSNLMQGLREHLTNTPYLTITVTAIHEKKEVLEQMELRLKVEAERLNFRFKFNAVVSSLESLDPETLPIKKGEPLAICCVLRLHSLLAANHDEMVKTKVQRAFSEMLINQSPDSALSPFSPCPSQKMESFLNGLWRLRPKVMLITEQESNANGASLRERVFKALSFYCTLFDCLEASASRTLIGRSLLEKMLLGEEIKNIVACEGVERKERHEKLETWIPRLELAGFGMASVSSNGIWLAEKLLQSYVPGYHMHQKNQFLFICWEKIPLFSISAWKF*

CDS Sequence:
>Vu_13017.1

ATGTTAGGTTCACAGTACCACTTGCAGGGATCGAAAGACTGGGATGAAGATGGCATAAAAATAATCCAACTTCTCAACGAGTGTGCCAGTTTTACTGAATCAGGAAACTTCATTGATGCAGATACTGCACTCTACAATCTCTCTCACCTTGCTTCCCCAGATGGCGATTCAATGCAACGAGTTGCCACTTATTTCACTGAGGCACTAGCACATTGCCAATTGGCCAAAAATCTGCGTGGTGTACCTAAAGTTCTCCGCTTGGTGAGAGCATTATCAACTCCTGAACAGCAACTTCTGAATCAGCTGTTCTTTGATTTCTACCCCTTCTTAAAGATCGCTCACACGATCACAAATCACACCATTATAGAAGCCATGCGAGGGGAAACAGCGATCAACGTGCTTGATCTCAGTCCATCCAACGCAGATCAGTGGAGTAATCTCATGCAGGGTTTGAGAGAGCATTTAACAAACACACCGTATCTGACGATTACTGTCACAGCCATACACGAGAAGAAGGAAGTGTTAGAACAAATGGAGTTGCGTCTGAAAGTTGAAGCTGAAAGGTTGAACTTCCGTTTCAAATTCAACGCTGTTGTGAGCAGTTTGGAGAGCCTTGACCCTGAGACATTGCCCATCAAGAAAGGTGAGCCTCTTGCGATTTGCTGCGTGCTTCGGCTTCATTCTCTTCTGGCTGCAAATCATGATGAGATGGTGAAAACGAAGGTTCAGAGGGCTTTTTCTGAGATGCTTATAAATCAAAGTCCTGACTCTGCACTCTCACCTTTTTCTCCATGTCCATCACAGAAGATGGAGAGTTTTCTGAATGGTCTGTGGCGGCTCCGACCCAAAGTGATGTTGATCACTGAGCAGGAATCAAACGCTAATGGAGCTAGTTTGAGAGAAAGGGTGTTCAAAGCTTTGAGCTTTTACTGCACACTGTTCGATTGCTTGGAAGCCTCAGCTTCAAGAACATTGATAGGGAGAAGCCTATTGGAGAAGATGCTTCTTGGTGAAGAGATCAAGAACATTGTTGCATGTGAAGGAGTTGAGAGAAAGGAGAGGCATGAGAAACTAGAAACATGGATTCCAAGGCTTGAATTGGCTGGATTTGGAATGGCTTCTGTTAGTTCCAATGGAATTTGGCTTGCAGAAAAGTTGTTGCAAAGCTATGTGCCTGGTTACCACATGCATCAGAAGAACCAGTTCTTGTTTATTTGTTGGGAGAAAATTCCTCTGTTTTCAATTTCTGCATGGAAGTTTTAG

Promoter Sequence:
>Vu_13017::LG3:22261037-22263037(-)

TGAGGATTCAAGAAATTGGAACTTGATGAGTTATCATAGGCTTAAAATCAATAAGGATAGAATTTGAATATATTGGTGAGTTGATTATGACTTGAATATGAATTGAGGTGTTTGTTAATGTATCAGAATGAAGTGGATGAATTATAGTCTTAACAAATTATAAATACTCTATGTTACATTTCCTTGCACACAAATTATTTATTAAAAAAACTAAAAAGTTTATTTTTTGTGTTTTGTGAACTTTGTGGTCTAATTGAATTATTAAGTGCAAGATTTATTGAACGTTGCATAAATCCTTTGGGAGAGAACGATATAAATACTTATTTCTTACTACGGTGGGACAAGTGAATTTGCTATTGGTTTTGCCACCAATAAAAAATACGGTTTAAGATTTAGGATTAGGGTTTGGGTTTGGAATTTATAGTAAGTGTTCAAGGTTAGGGTTTATGGTTAAGAGTAGGGTTTGGTTTATAGTTTATGGTTAAGGTTAGAGTTTATGGTTTAAGGATATGGTTAGTGTAAGAGTTTTGGGTTTATGGTAAGGGTTTAGGGTAGAATCAGGGTAAAGAATAGGTTTAGGATTAACGTGTAGGGTTTAGGATTTAGGATAATAGTTTATTATTTAGAGTTTATAGTTTAAGATTTAAGGTTGAGTTAAGGTTAAGGTATAAGGTTTTTGGTAAGGGTGTAGGGATAAAGTTAGGTGTAGGGTTAGAATTGTGGTGTATAATAAATGTTAGAGTTTAGAGTTTACGATATGAAGGAATGATTTATAGTTAAAGAGACGAGTGAGACAAAAACGTTGTTTGCAAACAAATCTTTGTTCCGTTCGCTCTGTGTCTGAGAGCGCATTACGACATTGACGTTTTTGGAAACATTTAAGGATGTCTATGGCGATTGGTGTCCCCTCATCGCGATGAACTATGTACACTAAGCATATTACATGTTTCGTTTGTTTTATGCACACGTTGATGAATTGTTTTTTGAAGATAGAATCAAAATACTCTCAGTTTGGCCTGCAATGAGTTATAATAATAGCAGTTCAAACTTTTTGGAAAGAGTAAAATAATATATTGTGGTTAGAAAACTCAGAATCTATGGTGGCAGACAAAAGGTGTGTACAAATTTCAATGACAAAATCAATATTTTTCGTTTGTCTCCATCGCAGAAAACAGGTTATGTCAAAGATTCAGCGCTATAAAGCTTAACATTATAATCCTTATGCAGACCTCTTAGCATCATTAGTCCAAACCAAAAGTCTAAGGATTGCTCATCTACGTTCTCAGATGGATTGAAGAAAGCACTGAAAAAACTTGGATGAGCAACGTTACTGGGGTTATTGCATGCAATCCAAGCTATGCAAACGGGTAGCACACGATCACTCTATTTAAGTATTTATTCTTTTTTCAGTCAAATTTGTTCTTAAATTAAATGGAAAAAAGTAAAAAAAATAACGGTGTTAACAATTTTTTCACAATGGATTATGTGTCACTATTTTATTGGTATGTATATTTGAAAGGGATCAATCACAAGCTATCACATAGGCTGTTGTAAAAAAATTGTTAAAAGAACATTTTTCAAAAATAACTTGAGTAATGATTTTTTTATACGCCTAAATTTTTTACACTACTCTTTCTTATTTTTCATTCTCTTCTTTCTTGAAAAAATAAAAAAGTTTACACTTTTATGACTAGTTTATCCTTATACTTTGTGTCAAATGAATGTAAAAATGTGTCATGATACCGTTACTTAATAACTATTCTCCGTCTTCGTAATTTTAGGTGGTTTTTGTCATAAACTCAAAGGAAAATATTCTTTGAGACACCTAAACTTTTTACAATCATTTGACACTACCATTCTACTTTTTGCTCTTTTATTTCTTAAAAAAAATACAAAAGTTTATATTTTCATGTCTCAGTGAATGAAAAAGTGTGTAATGATTACATACTTAAAGTCTAAGAAAATCCTCTTAAGAAATTTGATTATTGTTCGTGGTGTAT

Gene Sequence:

>Vu_13017(-)