Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12985 LG3 22021191 22026385 PREDICTED: zinc finger CCCH domain-containing protein 46 isoform X1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   protein ubiquitination
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nuclear envelope, nucleus, nucleus
Molecular Function   enables   ubiquitin protein ligase activity, protein binding, protein binding, ubiquitin protein ligase activity
Pathway   B 09122 Translation   C 03013 Nucleocytoplasmic transport [PATH:ko03013]
SNP Position Effect Amino acid change
A/C 22021222 3_prime_UTR_variant
G/T 22021223 3_prime_UTR_variant
G/C 22021246 3_prime_UTR_variant
T/G 22021315 3_prime_UTR_variant
T/A 22021316 3_prime_UTR_variant
T/C 22021417 synonymous_variant p.Arg377Arg
T/C 22021426 synonymous_variant p.Ser374Ser
A/G 22021571 downstream_gene_variant
T/G 22021575 downstream_gene_variant
A/G 22021691 synonymous_variant p.Asn342Asn
C/G 22021748 downstream_gene_variant
G/T 22021807 downstream_gene_variant
A/G 22021881 downstream_gene_variant
G/T 22022070 downstream_gene_variant
G/C 22022124 downstream_gene_variant
T/A 22022182 downstream_gene_variant
C/T 22022262 downstream_gene_variant
T/C 22022307 downstream_gene_variant
C/G 22022308 downstream_gene_variant
A/G 22022319 downstream_gene_variant
T/A 22022398 downstream_gene_variant
G/A 22022401 downstream_gene_variant
A/T 22022409 downstream_gene_variant
G/C 22022410 downstream_gene_variant
T/C 22022417 downstream_gene_variant
T/A 22022420 downstream_gene_variant
T/C 22022558 missense_variant p.Gln321Arg
T/A 22022611 missense_variant p.Gln303His
C/A 22022619 missense_variant p.Gly301Cys
A/G 22022675 splice_region_variant&intron_variant
G/A 22022921 downstream_gene_variant
C/A 22022927 downstream_gene_variant
A/G 22022960 downstream_gene_variant
C/T 22022961 downstream_gene_variant
C/G 22022962 downstream_gene_variant
T/A 22023002 downstream_gene_variant
A/T 22023004 downstream_gene_variant
T/A 22023141 downstream_gene_variant
C/A 22023151 downstream_gene_variant
T/C 22023153 downstream_gene_variant
T/G 22023161 downstream_gene_variant
T/C 22023166 downstream_gene_variant
A/T 22023171 downstream_gene_variant
A/G 22023205 downstream_gene_variant
G/A 22023298 downstream_gene_variant
A/G 22023470 synonymous_variant p.Pro246Pro
C/A 22023475 missense_variant p.Gly245Cys
A/G 22023550 missense_variant p.Ser220Pro
G/T 22023558 missense_variant p.Pro217Gln
G/A 22023596 synonymous_variant p.Leu204Leu
T/C 22023620 synonymous_variant p.Arg196Arg
C/G 22023809 downstream_gene_variant
A/T 22023822 downstream_gene_variant
G/A 22023840 downstream_gene_variant
A/T 22023860 downstream_gene_variant
T/C 22023866 downstream_gene_variant
T/C 22024004 downstream_gene_variant
A/C 22024043 downstream_gene_variant
G/A 22024113 downstream_gene_variant
T/C 22024215 downstream_gene_variant
G/T 22024220 downstream_gene_variant
C/T,* 22024236 downstream_gene_variant
G/T 22024237 downstream_gene_variant
A/G 22024261 downstream_gene_variant
T/A 22024275 downstream_gene_variant
T/C 22024367 downstream_gene_variant
G/A 22024393 downstream_gene_variant
T/G 22024437 downstream_gene_variant
A/G 22024458 downstream_gene_variant
A/T 22024520 downstream_gene_variant
A/G 22024523 downstream_gene_variant
G/A 22024528 downstream_gene_variant
C/G 22024552 downstream_gene_variant
A/C 22024557 downstream_gene_variant
G/A 22024563 splice_region_variant&intron_variant
C/T 22024733 downstream_gene_variant
A/T 22024779 downstream_gene_variant
A/G 22024791 downstream_gene_variant
C/A 22024854 downstream_gene_variant
G/A 22024860 downstream_gene_variant
T/G 22024861 downstream_gene_variant
T/A 22024902 downstream_gene_variant
G/C 22024906 downstream_gene_variant
C/A 22024944 downstream_gene_variant
G/T 22024969 downstream_gene_variant
C/A 22024991 downstream_gene_variant
A/C 22025011 downstream_gene_variant
T/G 22025117 downstream_gene_variant
G/A 22025138 downstream_gene_variant
C/A 22025199 downstream_gene_variant
G/C 22025202 downstream_gene_variant
G/C 22025230 downstream_gene_variant
T/G 22025279 missense_variant p.Asn120Thr
C/G 22025372 downstream_gene_variant
T/C 22025471 downstream_gene_variant
T/C 22025559 synonymous_variant p.Pro95Pro
C/T 22025585 missense_variant p.Gly87Arg
A/C 22025676 synonymous_variant p.Gly56Gly
C/A 22025883 intron_variant
C/A 22025905 intron_variant
G/A 22025911 intron_variant
C/T 22025985 intron_variant
G/A 22025990 intron_variant
A/C 22025998 intron_variant
C/T 22026003 intron_variant
A/G 22026006 intron_variant
G/T 22026026 intron_variant
C/T 22026050 intron_variant
A/T 22026069 intron_variant
G/T,A 22026098 intron_variant
G/C 22026100 intron_variant
C/A 22026104 intron_variant
G/T 22026123 intron_variant
G/A 22026131 intron_variant
G/C 22026186 5_prime_UTR_variant
A/C 22026237 5_prime_UTR_variant
C/T 22026243 5_prime_UTR_variant
G/C 22026253 5_prime_UTR_variant
C/T 22026306 5_prime_UTR_variant
C/A 22026308 5_prime_UTR_variant
A/T 22026315 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12985.1
MRDICRNFQRGSCQYGERCRYLHVNNQQRKPNVQGFGGQNGSHQQQSTNPFGFGSGSGSGSGFGSQQQQQKSNPFGFGTQNSSQLNGGPRSEYKPNQYKPFENKWNRQSSKPQNGGKSDNNPQPVDHKCTDPENCKRQIAEDFEKEKPIWILTCYSHCKGAPCDIVGDISFEELRASAYEDAKRGMSLQSIVEKERSILKSKMLEFEKLLSEPYQKPINSSLDSQRPQSMGANANLFSGTSPSNGPLSVSSFSQLGTSMNMGFGRPSAPPTNTLAQPSFFGVGGNSLASNTGNLNSSGSFGVQSNPHSTPADLTIFPGSTQQTPATFNNSGFQTTSDVLLSNKLQPENVSGDVSIWLKEKWNPGEIPEEAPPDSFVR*


CDS Sequence:
>Vu_12985.1
ATGAGAGATATTTGTCGAAACTTCCAGCGAGGCAGCTGCCAATATGGAGAAAGGTGCAGATATTTACATGTCAACAACCAACAGAGAAAACCTAATGTTCAAGGGTTTGGAGGACAAAACGGTTCTCATCAACAGCAAAGTACAAATCCCTTTGGATTTGGGTCTGGTTCTGGCTCTGGCTCTGGCTTTGGGTCACAACAACAACAACAGAAGTCTAATCCTTTTGGTTTTGGCACGCAGAACAGTTCCCAGTTAAATGGGGGACCTCGTTCTGAGTATAAACCAAACCAATACAAGCCTTTTGAAAACAAATGGAATCGACAATCGTCCAAACCCCAGAATGGTGGGAAATCTGACAACAACCCCCAACCAGTAGATCATAAATGCACAGATCCTGAGAACTGCAAGCGCCAGATTGCAGAAGATTTCGAGAAAGAGAAACCAATTTGGATACTTACATGCTACAGTCATTGCAAAGGTGCTCCTTGTGACATTGTTGGTGATATTAGCTTTGAAGAATTGCGGGCATCAGCTTATGAGGATGCTAAGCGTGGGATGAGCTTGCAATCAATAGTTGAGAAAGAGAGAAGTATACTGAAATCCAAGATGCTCGAGTTTGAGAAACTACTTTCTGAACCTTACCAAAAACCAATAAATTCTTCTCTCGACAGTCAAAGACCCCAATCCATGGGAGCCAATGCAAATCTGTTTTCAGGAACATCTCCAAGTAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTACTTCAATGAACATGGGTTTTGGAAGGCCATCTGCACCACCAACAAACACTCTGGCACAGCCTAGTTTCTTTGGAGTTGGAGGGAACTCTTTGGCATCCAATACAGGAAACCTAAACAGCAGTGGCTCCTTCGGTGTTCAAAGCAACCCCCATTCTACACCAGCGGATTTGACAATATTTCCGGGTTCAACTCAGCAAACACCAGCCACATTCAATAACTCCGGTTTTCAAACAACATCAGATGTCCTGTTGTCAAATAAGTTACAACCAGAGAATGTGTCAGGAGATGTCAGTATTTGGTTAAAAGAGAAATGGAATCCAGGAGAGATTCCAGAAGAAGCTCCTCCTGATTCATTCGTACGATAG


Promoter Sequence:
>Vu_12985::LG3:22026385-22028385(-)
TAATGTCATCTTATTATTTAAAAGTAGTTTCTAACCTAATTTTAAAACTTAGACATACTAAATTTCACACTTTAAAAGGTGTATTTGTTTTTTAAAATGAATTTTGAGAGAGTGAATTTAAATGAATTTGAAAGAAAAACGAGTTGAAAGTGAGATTGTATGAATTCACAATAAGTTGTTGAAAAATGAAGAGATTTGAAATGAAAATTAATTAATGATGTGATGAGTTTAATATATTACAAAAATATTTTTAATTGAAAAAATTAATAATTACTATTTTACCTTTGATTATAAAAGTAATTTAAAATATTTATTATCATTATTCATCTTATGTAGAAGGTAAAATGAAAAATATTATAAAATGAGCTACAATCTTCCGCAAATCCCTTCACTAAAGAAGAATATTTCTCCCACTTTCTTTCATTTTTATATGCATAAATCAATTCAAATTTGTAAAAACAAGCAAAAGTGATCAATATCTTTCTATCATCACAAACAATACATAATCTTAAACAGTGTAAGACCGAAACACATATTCTGATACCAAATACAAAATTTAAATTATTAAATATGTGATTTGAATCTTGTTATTGAAGAGTGGTGGTAGTAGGGACAGAGAAAACGAAGGAGAATAGAAGTGGGGTTTTGTCTATCATCTTTGTAGTGAAGACTATTGGAAGTGAAAGATAAACTTATCCCATACTTTGCCATTTGCATTGCATTTATGATGGAGAATGGATGATGAAACAAACAAGAAGAATAAAAAACAAACTAAGAGGATGTTTGATTCAATTGTCAATTTAAAAGAAGTGGAAGTTTCGTAATAAGAACAAAACCGCATACTTGACAGAAAAGTTTAGGGCTCTTTGATCTTTGCATATCCATTGGGAGTGAAAAAAAATGTAAAAGATGTCTCTTTTTTATTACGTTGTAATCACTTTCTATTAGTGATTTGAGAAGTTTTGAAGTTAAACATTTGGATGTTGTATTTTTTATTTTTGGAGTGATCAATATAAAATTATTTATTTTTATTCTAATAACATTGAAAATTATATAGTATAATGGTGTGATCAGTTTAAGAACCGAACCGTCAACCAATTCACGATTTTATGTGAGTCAAGTGATAACAGATTGGTTAGATTAAAGTAAAATTAGTGTTAAGTATAATTATATTAACCTTAAGCTGAGTCATTATGGTTTGAGTCGGGTTGTAATTAGATCAACATTAATCAAAAGTCCATACGTGAAATCTACAAATACAGATTGGTGGTATTCAGGTAATTGGTTACATTGATTGATTGTACATTTATTTTGGAGAAATAAAATTAACTTCGACCCCACCGAAACAAAAATAAAACATTTTAGAGTATGCAATATAACAAATAACATTATTTTTTTTAGTTGTGCAATCTTACACAACTTTATATAATTATATTTTTGTCATTTTTTTAGTCAATGGAATATAAGAAGAAACAATCAGATTCACTGAGAAAGCACCAAAAGACAATTTCTTTTTCACCTTCATAATTTTAACTTGAACTCACATAAATTATTATATTTCGAATCATGTAATTTAGCATATAAATTTTATATTTCAGAATTATAATTTGAAATATATATTTTATTTTATATTTTAGAATGTATAATTCAAAATATAAATTTTTATATTTTGAAATATAAATCTAAAATATAATTTTTGTATTCTGAATTCTATAATTTTAAGATAATATAATTTGAAATTTATTTTTATTTTGTATTCTAAAATATACTGGAATAAATAAAAATGTATGATGGTTATATATTTTGGAATACAATATCAGATTACACGTTTTGAAAAGAAAAAAATTTACTGTGGTGCATATTGAAATTGTGGACGTGCAAAGAGAAATAGCTGTCCCAAAGTGAATACGAAGGCCGAAACTTCAGCTTTTAGGTCCAAAATGGTCCAAAATGCAGGGTTTTCAGTCGAAAAACCGGTTTTTGAAAGAGGAAAACCTGTG


Gene Sequence:
>Vu_12985(-)
ATTAGGGACCTAATAAAAAAAAGAAAACCACCAATTTTCATCTGTTATTTGTTTTTTCAAGTTTCAACCATAGAGTGGAGCGAGAAGTGAATGAGAAATTGAATTTCCATGAGCAATTGATTTTAGCAAAGTCGAAGAAAGGGTTTGTTTTGTTCGGAATTGTTAACGTTTGACGTTTGACGATGTTATAGCTCTAAAACGATGAGAGATATTTGTCGAAACTTCCAGCGAGGCAGGTTATTGTTCTTCATCTTCTTCATTGCTTTACTTGCACTTTCAATGTTCCACGATTCATTAAGATACCGTTGTGATGTTGTTTCTGTGTAATTACCATCGCAATTATTTCTTTTCATTTTTCACTGTTTGTGTGCATATCTTGTGGGGGCGTGATTGGACTTTGGATTTTCAGCTACTGGTAGTATATAACTGTATAAATCTGAGCATTTACGTGTTATATAACAGTAGTAATCTATGCGATCAGATATGCTTTTAGATTATTAATGTTGAATTTATTCGTCCGTTTGCGTCATCAGAAGTTTTGAGAATGGGTTTTAAGTTGCCATAGTTCATGTTTCAGCTGCCAATATGGAGAAAGGTGCAGATATTTACATGTCAACAACCAACAGAGAAAACCTAATGTTCAAGGGTTTGGAGGACAAAACGGTTCTCATCAACAGCAAAGTACAAATCCCTTTGGATTTGGGTCTGGTTCTGGCTCTGGCTCTGGCTTTGGGTCACAACAACAACAACAGAAGTCTAATCCTTTTGGTTTTGGCACGCAGAACAGTTCCCAGTTAAATGGGGGACCTCGTTCTGAGTATAAACCAAACCAATACAAGGTTCTCATTCTTTTCCTATGTTTATACATGATGAAAAGGTTTATTTTTGTATTTTAGGCATTATAATAAATTACTACGACATTGAAGCTTTTTGATATTGGTGGACTATTTTTGAGGGGTTATCGATGCAATGTCTGCTTCATCTTCACTTTTAGTAAAATAATCTGATGTTTTGTTTTAGTATTGATCATTTACCTCTGAAGCAGCCTTTTGAAAACAAATGGAATCGACAATCGTCCAAACCCCAGAATGGTGGGAAATCTGACAACAACCCCCAACCAGTAGATCATAAGTGAGTATTTATCAATCCACTCTCCGTCTCATGAATCATGGATATTTTTCTTCATGTTGTATCGAGTCAACATGAGGGACAAGGATGTGCATGACTGCCACCTGTTGGACATGCGCCCTTGTACTTCAGAATGAGAAACATAAAAAGAAGAGGTCTAAATGTCTACAAAATGCATAAACACTGACTAATGGTGCTTGAAAGTACCAAACAAACTCTAATTTTTTATTGGATCACTGGAGGGCTTTGTTTTTTTTATCAATTTTGAGGATGCAAAATTTTTGTTGCCTAGGCGCTATTGCTTTTTCTTTTTGGCTAAAGTTTACAATCCTCTGCATGTTTATCTTTAAACAATATGCCGTTTGTTATTAACAAACAAGCAAAGGAAAATTGAGTACCATTTGTTTGCTTTTGTTGGGTTCTGTGATTTCTTTTGGAGAATACCTGATCATCTTTAGTACTTTTCTTGCTATCTAGTTAATCTTTTTCTACAAAAGAGGGTCTCTATTGTATTTTTTCCTTGTGCCTTGTTTATGTATTGCATTTTGCATAATATTATTGATATACTTTACTTGGTTGATGTAATTAAAAGATGCACAGATCCTGAGAACTGCAAGCGCCAGATTGCAGAAGATTTCGAGAAAGAGAAACCAATTTGGATACTTACATGCTACAGTCATTGCAAAGGGTATATCTCTCATACATGATGGTTTGAAAACATTAACCGAACTTTTTACTGTAAATATATTTTTTAATCATGTACAACTCCATCACCTAATGCAGACAAAAAATTCCATTTTCCTTGAAACCCGTGTAACTGAGCTACGTTGATTGTTGACTATTTTTTCAATTCATCCAATGCAACACTGATAAATTAACCAGTAATCATTAAACACTTCCTCATCCTATCTTTAAACATTCTTTTGAAAGCTACTGTCCATATGATTAGCAAGATCTTAACAGGAACGTTTTCCTTATGCATAAAAGAGCTTCAGATGATTGGGTTTCACATGGAAGTTTCGCATGCATGAGTTCACCTATTATTTAATTTTCCGTAAACTGCAGTTGAATCTTCTTTAGTTACTAATGAGTTAGGCCACTGTCCACCTGGATTACACCTGCTAGATAAACCTGAAAACATTTCCTCAAGAAATTTGCAGTTAAAACGATAATACTGGAAAAAGAGATCCTGGTGTACTCTTGAAAGAGAAATTTCTTTAAAGACTCCTAACCAGTGCTCTAATAAGAAAACTAAGTATAGATTTTGATCTCCTTTGCTGCAGTGCTCCTTGTGACATTGTTGGTGATATTAGCTTTGAAGAATTGCGGGCATCAGCTTATGAGGATGCTAAGCGTGGGATGAGCTTGCAATCAATAGTAAGAAATCTGACATATCATGCCTTTAGCCCCTTTCTCTCTCCTCTCCCCTTCACATTTTTGGAAGATACGCTATTCTGTATCTAGTTGTAACTGCTTTAGTTTTCTTTAATGAAATTTCACTTTGACAATTTGTATTAAAGAAGAGCGTCCTTTACTGTGTCTTTTGTGTTGACATTTGTAATTACAAGGTTACAGTCGTGCTCAAATGTATTCTGTGTCTAACCTAAAAATATGACATTGCAGGTTGAGAAAGAGAGAAGTATACTGAAATCCAAGATGCTCGAGTTTGAGAAACTACTTTCTGAACCTTACCAAAAACCAATAAATTCTTCTCTCGACAGTCAAAGACCCCAATCCATGGGAGCCAATGCAAATCTGTTTTCAGGAACATCTCCAAGTAATGGTCCTTTGTCAGTCTCAAGCTTTAGCCAACTGGGTACTTCAATGAACATGGGTTTTGGAAGGTAAGAGTTACTGGCTAGAAAATATTTTCCTCATTTTTGGTTGCTTGATGTTGGAAAACAACTAGAGAAAATCCACAATAAACTACTTGAGAGTTGAATGAGCTCCACTGGAGTGCGGTTTGTACCATATAAGGTATTGGTGAGACTTGATAGTTTGTCTAATTTGCATTAGACCTCTACTGACACCCTTTCTTCTAGAACTCCTGTCTACTGTGTATTCTTGTTTAGGATTGTGTTGTAATTGCCAAGAGAATGGAGAAATGCACAAGAGCATTTATTATTGTCGTATAATGTTACAGTTTTCGTAGATGCTGTTTCAGGCTAGTTGGATATCAGTTTTTAAGGGCACTAGAATGACCTAGGTCTTGAAAATTTGGTTTCTGTAAACTTTCCGATAGTGGCTATGTGGTTACATTGGTATTACTTGTGGAATTGGGTATGGGATGTGGTTGGTATAGAATGGATAAGATGCAGGTCTGCAATCATGGCTTCCCATGCATTGATTATTCTTCATCTTGTACTTTCCTTGTCATACTCTGCTAATATTTTTTTCTTGCTTTTGGTCTAATCTGTTTGGAACTATTGTTAGGCCATCTGCACCACCAACAAACACTCTGGCACAGCCTAGTTTCTTTGGAGTTGGAGGTATATGGTTGGTGTATTTTTTATAGTGTTATGACTATATATGTCTTTTGTTTTTCTTGCTCATATATGTCTGATTATCAGTGCTATAATAAATACTAGGGAACTCTTTGGCATCCAATACAGGAAACCTAAACAGCAGTGGCTCCTTCGGTGTTCAAAGCAACCCCCATTCTACACCAGCGGATTTGACAATATTTCCGGGTTCAACTCAGCAAACACCAGCCACATTCAATAACTCCGGTTTTCAAACAACATCAGATGTCCTGTTGTCGTAAGTTCATAGCACATTAAAAAGTCCTGAAAAGCAGTTGCCACAATTTAATCACTTGATGATCTCATTCATTGAAAAATAGTTAAACTGTTTAACCATATTTCAGGGTACATTGTTTTAGATCATGTGGAATTAATAAATGACAGAGATTGATTATAATCTGGCGAGTCAATCATTATTGTTTTCATTGAAAACTTTTCAGCTTAGTTATGCATTTTCAGTTTTCAAAAAAATTGAGCTTGAAAATTTCAATTTTATCCATATTGGATTATTATTCCATTTTATTTAATAAAGTAGCAGCAGTAATTTTTTGTGACAAGACTCCCATAATGCTTTCTAATTTTTAATTTTGAAATGATTATGATAAACTTTTCTGATTTAAGTACTATTCAAGATTTCATTTGGCAATGATGAACGTACCAAGCACCCCCAATTGCCTCAGGAGCTCACTTCAACTATTATAATTTTTCTTAAAACAGACCAAGTTGAATCTATTGTAATTTTTATAATTTTGATGAAGCTGACCGCATAACCCAATGATAAAATATATTTTGTTAAGCCATAAGTTAGAGTTTGTAGATTAGAAGGATTTTAATTCCAGTATAAGTGCTTGTATTGGTTGGATCTTTCTTTATTTTTATGAAACAATGCCCCAGTTTATACTAGTATGAGTCTTTTTGGAAACTTCACCTTTATTCATGCATTTTCTGAGGTTGTGTCTATGTATTGAAGAATTTTTTTCTTCGAATGCAAGTTACAAAGACTTCCGATTGAATTTTTGTGGCCGTTCTTTATTCTTGCAGAAATAAGTTACAACCAGAGAATGTGTCAGGAGATGTCAGTATTTGGTTAAAAGAGAAATGGAATCCAGGAGAGGTAATAGTCTCTGCTTTACTCTTGACTGATAAAACTTGTCTCCAAGACATTTTGTTTCCATTTCTATAAGCAGGACAAAATCCTCCTTTGAACAGTTAGATTGATAAGTGCTTGATGTGCTAACATTTGTTCGTTTTCATTTTGTTTTTGTACTGTGTCTGTTTGGCAGATTCCAGAAGAAGCTCCTCCTGATTCATTCGTACGATAGACATTAGTAAAATGGCATCTGAAACATAGGAACCAATACTTCGTTACCACTCAGCAAGATTTTGGTTTCGTGAAAGATCAATAGCATGTTTTAGATCAATATTTGGTATTCATTTGATACGGATTCCACTCCTGTTATGTATAATGTCTGGGTATGCATTGTGTATGCAAGAAACCTACTACGCAATGCTCTTTTCTGGCAGTAATTACGCCTTTTTCAAATG