Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12945	LG3	21737666	21740023	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/G	21737674	missense_variant	p.Glu784Gln
C/T	21737677	missense_variant	p.Ala783Thr
T/C	21737697	missense_variant	p.Glu776Gly
A/G	21737702	synonymous_variant	p.Gly774Gly
C/G	21737703	missense_variant	p.Gly774Ala
A/C	21737709	missense_variant	p.Val772Gly
C/A	21737710	missense_variant	p.Val772Leu
T/C	21737725	missense_variant	p.Asn767Asp
T/G	21737727	missense_variant	p.Tyr766Ser
G/A	21737754	missense_variant	p.Ser757Leu
T/C	21737775	missense_variant	p.Glu750Gly
C/T	21737776	missense_variant	p.Glu750Lys
A/G	21737780	synonymous_variant	p.Asn748Asn
T/A	21737791	missense_variant	p.Ile745Phe
G/T	21737810	synonymous_variant	p.Leu738Leu
T/C	21737818	missense_variant	p.Lys736Glu
G/C	21737824	missense_variant	p.Pro734Ala
A/C	21737899	missense_variant	p.Tyr709Asp
T/A	21737910	missense_variant	p.Glu705Val
C/T	21737911	missense_variant	p.Glu705Lys
C/T	21737965	missense_variant	p.Glu687Lys
A/T	21738099	missense_variant	p.Phe642Tyr
T/C	21738208	missense_variant	p.Lys606Glu
C/T	21738209	missense_variant	p.Met605Ile
T/A	21738223	missense_variant	p.Arg601Trp
T/C	21738239	synonymous_variant	p.Gly595Gly
T/A	21738258	missense_variant	p.Lys589Met
C/T	21738262	missense_variant	p.Asp588Asn
C/A	21738287	synonymous_variant	p.Val579Val
A/G	21738294	missense_variant	p.Val577Ala
G/A	21738308	synonymous_variant	p.Asp572Asp
G/T	21738316	missense_variant	p.Leu570Ile
C/A	21738328	stop_gained	p.Glu566*
C/T	21738330	missense_variant	p.Arg565Lys
C/T	21738336	missense_variant	p.Gly563Asp
C/G	21738337	missense_variant	p.Gly563Arg
A/T	21738338	synonymous_variant	p.Val562Val
A/C	21738413	synonymous_variant	p.Gly537Gly
A/G	21738476	synonymous_variant	p.Cys516Cys
T/C	21738481	missense_variant	p.Ile515Val
C/G	21738494	missense_variant	p.Glu510Asp
C/T	21738497	synonymous_variant	p.Glu509Glu
T/A	21738509	synonymous_variant	p.Ser505Ser
T/A	21738560	synonymous_variant	p.Gly488Gly
T/A	21738570	missense_variant	p.Lys485Met
T/G	21738578	synonymous_variant	p.Ala482Ala
T/C	21738620	synonymous_variant	p.Ala468Ala
T/A	21738656	synonymous_variant	p.Ile456Ile
C/T	21738668	synonymous_variant	p.Ala452Ala
T/C	21738677	synonymous_variant	p.Lys449Lys
G/A	21738691	missense_variant	p.Pro445Ser
A/G	21738693	missense_variant	p.Met444Thr
C/T	21738945	missense_variant	p.Gly360Glu
A/G	21739058	synonymous_variant	p.Ala322Ala
A/G	21739112	synonymous_variant	p.Asn304Asn
A/C	21739225	missense_variant	p.Leu267Val
T/A	21739227	missense_variant	p.Glu266Val
C/G	21739232	missense_variant	p.Glu264Asp
C/A	21739238	missense_variant	p.Met262Ile
A/C	21739538	synonymous_variant	p.Val162Val
T/C	21739615	missense_variant	p.Thr137Ala
G/T	21739838	synonymous_variant	p.Ile62Ile
C/T	21739847	synonymous_variant	p.Val59Val
C/A	21739862	missense_variant	p.Met54Ile
G/A	21739883	synonymous_variant	p.Thr47Thr
C/T	21739939	missense_variant	p.Asp29Asn
G/A	21739946	synonymous_variant	p.Gly26Gly
G/A	21739952	synonymous_variant	p.Leu24Leu
G/A	21739988	synonymous_variant	p.His12His
T/C	21739994	synonymous_variant	p.Leu10Leu
C/T	21740013	missense_variant	p.Ser4Asn
G/C	21740015	missense_variant	p.Asp3Glu

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12945.1

MADSVVSFVLDHLAQLAAREANLLYGVEDRVQSLQYELQMIKELLNTTKRKKGMEHTVVNQIRDVAHLAEDVIDTFVAKVSIYKRRTLLGRMLRGFGQARLLRHVAQKIDKLKSTLNEIRDNKDKYDAFREATNQSTAEEEEEKERLQSLHKLRRDVEEEHVVGFVQDSKDVVKRLQEGGSNRKIVSIVGMGGLGKTTLARKVYNSSIVNDLFDCRAWVYVSNECRVKELLLGLLKHLMPNFEQQRKSSKKGKKSSGDINNMNEEELKKQVWNCLETKRYLVVVDDLWKRRDWDEVQDAFPDDNNGSRILITSRLKEVALHAGDDVPHYLQFLSEEESWKLFCRKVFKGENRPSDLETLGKQMVQSCRGLPLSIIVLAGLLAKKEKSQREWSKVVGHVNWYLTRDETQVKDIVLKLSYENLPRALKPCFLYLGLFPEDFEIPVMPLLQKWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVAGVKLNGRLETCQVHDLLRDLCISESKEEKVFEICTDNNILIPIKPRRLSIQSDMGHYISSSNNDHSCIRSLFFFGSEYNVGGREWKWLLDDFKLVRVLDFGPNSCDKIPSNLGNFIHLRYLRMKSGNNITFVPDSILNLWNLQTIELSNWLPYNMDSISFPVQMWKLKHLRHLNVKSHVKLRGRCSELDQKMWNLQTISRLVLNEQATSLIKKGTFPNIKRMEIIDYEDELPNLLQSLELLKHLNKLVICTPRKSLSEQVTHILQNLETNGVEVSSFNYKEQYYNTLCIVHGVEPKFYECAEG*

CDS Sequence:
>Vu_12945.1

ATGGCAGACAGTGTAGTTTCCTTTGTTTTAGATCACTTAGCCCAGCTTGCCGCACGCGAAGCTAACTTGCTCTATGGCGTGGAGGACAGAGTCCAGTCCCTACAGTACGAACTTCAGATGATCAAAGAGCTCCTCAATACCACAAAGAGAAAGAAGGGAATGGAACATACTGTTGTGAACCAAATCAGAGATGTGGCCCACTTAGCTGAGGATGTCATCGACACTTTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCCTTCTGGGGAGGATGCTCCGTGGCTTTGGCCAAGCAAGGTTGCTCCGCCACGTAGCCCAAAAAATAGACAAGCTCAAATCCACTCTCAACGAGATACGCGACAACAAGGACAAATATGATGCTTTTAGAGAAGCCACTAATCAATCCACAGCAGAAGAAGAGGAGGAGAAGGAAAGGTTGCAATCGCTGCACAAGCTAAGAAGAGACGTGGAGGAAGAACATGTTGTTGGCTTTGTCCAGGACTCCAAGGACGTCGTCAAGCGACTTCAGGAAGGTGGTTCGAATCGTAAAATTGTCTCTATCGTTGGCATGGGGGGATTAGGGAAGACCACCCTTGCCCGAAAGGTCTACAATAGCAGCATTGTGAACGACCTCTTCGATTGTCGTGCGTGGGTTTATGTCTCAAACGAGTGTAGAGTTAAAGAGCTTTTGCTTGGCCTTCTTAAGCATTTGATGCCAAATTTTGAACAACAACGCAAAAGCAGCAAGAAAGGTAAGAAAAGCTCTGGAGACATTAACAACATGAATGAGGAAGAGTTGAAGAAACAGGTGTGGAACTGCTTGGAGACGAAAAGGTATCTTGTGGTGGTAGATGACTTGTGGAAAAGGCGGGATTGGGATGAGGTGCAAGATGCTTTTCCGGACGACAATAACGGCAGCAGAATATTGATAACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTGATGATGTTCCTCACTATCTTCAATTCCTGAGTGAAGAAGAAAGTTGGAAGCTGTTTTGCAGGAAAGTGTTTAAGGGTGAAAATCGCCCTTCTGATTTGGAGACCCTGGGAAAGCAGATGGTTCAAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTTTTAGCAGGACTGCTAGCCAAGAAAGAAAAATCACAGAGAGAATGGTCTAAAGTGGTAGGTCATGTTAATTGGTATCTGACTCGAGATGAGACCCAAGTGAAGGATATAGTTCTCAAACTCAGCTACGAAAACTTGCCAAGAGCATTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCTGAAGATTTTGAAATACCTGTTATGCCATTATTGCAAAAATGGGTTGCGGAGGGTTTTATACAAGATACAGGAAATAGAGACCCAGATGATGTTGCAGAAGACTACTTGTACGAGCTCATTGATCGTAGTTTGGTAGCAGGGGTGAAGTTGAATGGACGTTTGGAGACGTGTCAGGTTCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAGGAGAAAGTGTTTGAAATTTGTACAGACAATAACATTCTAATCCCTATCAAACCTCGCAGACTGTCCATTCAGAGTGACATGGGTCACTACATTTCTTCAAGCAACAATGACCATTCATGTATTCGTTCCCTGTTTTTCTTTGGATCGGAGTATAATGTTGGTGGGAGAGAGTGGAAATGGCTTTTGGACGACTTCAAATTGGTTCGAGTGTTAGACTTTGGACCTAACAGTTGCGATAAGATCCCTTCCAATTTAGGAAACTTCATCCACTTAAGGTACTTGAGAATGAAGTCAGGTAATAATATTACATTTGTTCCAGATTCAATACTTAACCTTTGGAATCTACAAACCATAGAGTTGAGTAATTGGTTGCCTTATAACATGGATTCAATTTCTTTTCCTGTTCAAATGTGGAAACTCAAACATTTAAGACATTTAAATGTAAAATCTCATGTCAAGTTGAGAGGAAGATGTTCAGAATTAGATCAGAAGATGTGGAATCTTCAAACCATCTCTCGTCTTGTACTCAATGAGCAAGCAACATCTCTAATAAAGAAAGGAACATTCCCCAATATTAAGAGGATGGAGATTATTGATTATGAAGATGAATTACCTAATTTATTGCAAAGCTTAGAACTATTGAAGCATTTGAATAAATTAGTGATTTGCACACCAAGAAAATCTCTCTCAGAACAAGTGACTCACATCTTACAAAATTTGGAAACAAATGGAGTTGAAGTTTCATCATTTAATTACAAAGAACAATACTATAACACGTTGTGCATTGTACACGGTGTGGAGCCCAAATTCTATGAATGTGCTGAAGGGTGA

Promoter Sequence:
>Vu_12945::LG3:21740023-21742023(-)

TAGATACTTGCAAGTATCAACTATCTACTATGCTATCAATTACATATTTTATCTGAACATACTTGCAAATATATTTATCATTTCTAATATGTCATCGTTATCACCTATATCAATAATATTCATCACGATCATTCATTAGATAATGACATGAACATTAAAAAATATAACAATTTGATAATCTAACAAGTTTTATATTAAAAAGTATTTATTTTTTGTGTTATTTCTAATTAATTATCAAACCTTATACTTTTTAACATATATAAAGAAAGTGAGCAAGTCGACCATAAAAAAGGTAAACAATACGGTGAGACTAAATAAAAACATTTTAAAAAATAATAATAAAAATTCAATTAAAAATAACTAAAATTATTTAAAACTTAATTAAACTTAAATTATATATATATATATATATATATATATATTAAATTTTTCTGTTGTTAGTAGATATAATAATTGCATAATTAATTAAGGTGTTACTAATCATAATATGACTTAGGTGCTGATTATATGACTTCTAATAATCATAAATTTACTATTATTAATGTTAACGAGTCTCATTTCCTATGGAAGGTGTAAGTAGTATATTCCTCTATCCTTCAAACTATGGAAGGTGTAAGTAGTATATTCCTCTATCCTTCTTTATTGATTCCTTATCAATGAATATCACAAAGCTCATAATGGGCAATGTTTGTCTCACAAGAAAAACTCATTTTTTATATTTGTTTAAATGAATTTATTGTCCAAGTAAATGAATTTTGTTTTTTAGGAAAAAAACTGAAAAAATTCTTATTTTGCAATGGTTATTAGAATAAATTTTGAATTAAAAAATGTAAGCACAAGTATTTCGGTTAATTTATTTGTCTCACATCCATTTATTTAAATACATGAAACTCTACAATAGTCCTTCTTTTATTATCATTTTCTCATTTATATATTTATATATGTAAACAATTAAAAAAATGTGATATCTGTTGACTGACCATTTTAAATATATAATTTCATCCCCTTATTTAAAAATAAAATACGTGTACTAAAAGCACTATATTACATACTAAAAATTATAATTGTCTTTTTTTATAAAATTTATATATATTCATCTTCAAAATTGTTTCTGTGTAAGCATTTAATAAAAGAATTCTACCACTACCATGTTTCAACACTTTCTTATTCAAAACAAAAATATATTCTTATAGAAAATTCCTTTTATTTTTGTTTTTCACATAGGTTTTAATATTGTTACATTTTGAACTTGTTGATTATCATTGTGTCTAAATATCATGTCATGTCATGATAGTTATTATATTCAAAGAGAAATGTCTAAAAACTCAATATAGTCTGGAAATTATAAGATTTTTTTAGAATTAAAAATATTCATAGAATACCATAATACTTTCTATGGAAAATTTATTATTTTTAATTTCAATTGAGTATACCCGTTTTTTTTTTTGGTTCAGCTTTGAATGAATTTAGTTGAGCTTACAAATTAACCAAAATAAATTAATTAACATATTTGGTATACTAAAAAGTTTTTGTATCTTATTTTTTAATGATATATTAGTGATGAGAAATTGTCAGGATATTCATTTAATAATTTGATCCAAGCAGCAGGGCAACGCGTATTTAACGCATATAAGACAAAGGTAATTTGAATATGTTGTAATGTAATAAATGTAAATATCTTAAAGGAAAATAGGTAGAAAGTGCAATGCAAATAGCAGGAAGGTGCCACGCTCCTCACATTATGCACTTCAAAAGTAGTCATTGTTGACGAAAAGCGAATGGACCGACAAACTATTATATTTCTTTTTTTTATGCTATTGCCAGCTACACGCTATTGCTTTTTCTGGTGCTTTCTTTATTATTGCAGACACTTTTCATAGCATGCATTATTGCAAGCTACACAGTATTGCTTTTTCTGGTGCCTTCGTAAATCTTGTTACTCTTCTTCCATCACCAACCACAAACCCAGTATCACTATCTACACGCTCGTCCACCCTGTA

Gene Sequence:

>Vu_12945(-)