Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12944	LG3	21731260	21733587	hypothetical protein LR48	Map

Annotations

category		relationship type		keyword

SNP	Position	Effect	Amino acid change
C/T	21731273	missense_variant	p.Gly772Glu
T/A	21731278	missense_variant	p.Leu770Phe
A/G	21731286	missense_variant	p.Tyr768His
C/A	21731424	stop_gained	p.Glu722*
G/A	21731464	synonymous_variant	p.Asn708Asn
T/A	21731471	missense_variant	p.Glu706Val
C/T	21731472	missense_variant	p.Glu706Lys
C/T	21731526	missense_variant	p.Glu688Lys
G/T,C	21731541	missense_variant	p.Arg683Gly
G/T	21731607	missense_variant	p.His661Asn
A/C	21731608	missense_variant	p.Phe660Leu
A/G,T	21731670	missense_variant	p.Ser640Pro
A/T	21731675	missense_variant	p.Ile638Asn
C/A	21731678	missense_variant	p.Ser637Ile
C/A	21731688	missense_variant	p.Gly634Trp
T/C	21731690	missense_variant	p.Gln633Arg
G/A	21731691	stop_gained	p.Gln633*
A/T	21731704	synonymous_variant	p.Ile628Ile
C/T	21731757	missense_variant	p.Asp611Asn
C/T	21731759	missense_variant	p.Gly610Asp
T/A	21731782	synonymous_variant	p.Leu602Leu
G/A	21731788	synonymous_variant	p.Thr600Thr
T/C	21731864	missense_variant	p.Glu575Gly
G/C	21731886	missense_variant	p.Gln568Glu
C/T	21731973	missense_variant	p.Gly539Ser
G/C	21731977	missense_variant	p.Asn537Lys
T/C	21731979	missense_variant	p.Asn537Asp
T/C	21731981	missense_variant	p.Asn536Ser
C/T	21732039	missense_variant	p.Val517Ile
T/A	21732056	missense_variant	p.Glu511Val
C/T	21732064	synonymous_variant	p.Glu508Glu
T/C	21732099	missense_variant	p.Ile497Val
T/C	21732100	synonymous_variant	p.Gln496Gln
A/T	21732126	missense_variant	p.Ser488Thr
C/T	21732127	synonymous_variant	p.Lys487Lys
T/C	21732132	missense_variant	p.Met486Val
G/A	21732145	synonymous_variant	p.Val481Val
A/T	21732295	stop_gained	p.Tyr431*
C/A	21732589	synonymous_variant	p.Leu333Leu
A/G	21732603	missense_variant	p.Tyr329His
G/A	21732604	synonymous_variant	p.His328His
A/C	21732622	synonymous_variant	p.Ala322Ala
C/T	21732637	synonymous_variant	p.Glu317Glu
T/G	21732655	synonymous_variant	p.Ile311Ile
G/A	21732667	synonymous_variant	p.Ser307Ser
T/C	21732675	missense_variant	p.Arg305Gly
G/A	21732682	synonymous_variant	p.Asp302Asp
C/T	21732685	synonymous_variant	p.Pro301Pro
A/G	21732694	synonymous_variant	p.Asp298Asp
C/G	21732702	missense_variant	p.Val296Leu
T/G	21732704	missense_variant	p.Glu295Ala
A/G	21732706	synonymous_variant	p.Asp294Asp
C/T,A	21732715	synonymous_variant	p.Arg291Arg
C/T	21732716	missense_variant	p.Arg291Gln
G/A,C	21732717	missense_variant	p.Arg291Trp
C/T	21732718	synonymous_variant	p.Arg290Arg
T/A	21732720	missense_variant	p.Arg290Trp
T/A	21732721	missense_variant	p.Lys289Asn
T/C	21732722	missense_variant	p.Lys289Arg
G/A	21732730	synonymous_variant	p.Asp286Asp
A/G	21732737	missense_variant	p.Val284Ala
C/T	21732738	missense_variant	p.Val284Ile
C/T	21732739	synonymous_variant	p.Val283Val
C/T	21732741	missense_variant	p.Val283Met
C/T	21732751	synonymous_variant	p.Arg279Arg
T/C	21732756	missense_variant	p.Lys278Glu
T/C	21732759	missense_variant	p.Arg277Gly
C/T	21732760	synonymous_variant	p.Glu276Glu
G/A	21732769	synonymous_variant	p.Asn273Asn
T/C	21732770	missense_variant	p.Asn273Ser
C/T	21732773	stop_gained	p.Trp272*
A/G,T	21732774	missense_variant	p.Trp272Arg
A/G	21732789	synonymous_variant	p.Leu267Leu
C/T	21732790	synonymous_variant	p.Glu266Glu
T/C	21732802	synonymous_variant	p.Pro262Pro
G/A	21732803	missense_variant	p.Pro262Leu
T/A	21732810	missense_variant	p.Asn260Tyr
T/C	21732817	synonymous_variant	p.Gly257Gly
A/C	21732822	missense_variant	p.Ser256Ala
A/G	21732876	synonymous_variant	p.Leu238Leu
C/A	21732883	synonymous_variant	p.Leu235Leu
A/G	21732889	synonymous_variant	p.Gly233Gly
C/T	21732905	missense_variant	p.Arg228Lys
G/T	21732907	synonymous_variant	p.Val227Val
C/A	21733040	missense_variant	p.Arg183Leu
T/C	21733112	missense_variant	p.Glu159Gly
G/T	21733323	missense_variant	p.Leu89Met
C/T	21733334	missense_variant	p.Arg85Lys
A/G	21733347	missense_variant	p.Ser81Pro
T/C	21733357	synonymous_variant	p.Val77Val
C/T	21733384	synonymous_variant	p.Leu68Leu
G/C	21733439	missense_variant	p.Thr50Arg
A/G	21733450	synonymous_variant	p.Asn46Asn
C/G	21733459	missense_variant	p.Glu43Asp
T/G	21733470	missense_variant	p.Met40Leu
G/C	21733473	missense_variant	p.Gln39Glu
G/A	21733501	synonymous_variant	p.Asp29Asp
G/C	21733516	synonymous_variant	p.Leu24Leu
G/C	21733531	synonymous_variant	p.Arg19Arg
T/G	21733534	synonymous_variant	p.Ala18Ala
G/C	21733537	synonymous_variant	p.Ala17Ala
G/A	21733538	missense_variant	p.Ala17Val
A/G	21733570	synonymous_variant	p.Val6Val
C/G	21733579	missense_variant	p.Glu3Asp

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12944.1

MAESVVSFVLDHLSQLAAREANLLYGVEDRVQSLQYELQMIKELLNTTKTKKGMEHTVFNQIRDVAHLAEDVIDTFVAKVSIYKRRTILGRMLRGFGQARLLHDVAQKIDKLKSTLNEIRDNKDKYDAFREATNQSTAEEEEEKERMQSLHKLRRDVEEEHVVGFVQDSKDVVKRLQEGGSNRKIVSIVGMGGLGKTTLARKVYNSSIVNDRFDCRAWVYVSNECRVRELLLGLLKHLMPSFEQQRKSSKKGKKSSGDINSPSEEELKKQVWNCLERKRYLVVVDDLWKRRDWDEVQDAFPDNNRGSRILITSRLKEVALHAGDDVPHYLQFLSEEESWKLFCRKVFKGENRPSDLETLGKQMVQSCRGLPLSIIVLAGLLAKKEKSHREWSKVVGHVNWYLTRDETQVKDIVLKLSYDNLPRRLKPCFLYLGLFPEDFEIPVTPLLQKWVAEGFIQDTGNRDPDDVAEDYLYELIDRSLVQVARMKSNGGLARCQIHDLLRDLCISESKEEKVFEVCTDNNILIPTKPRRLSIHNNMGHYISSSNNDHSCIRSLFFFGPYYDVGGRQWKWLLDECKLVRVLDFGSNSCRKIPSNLGNFTHLRYLRIESGDITFVPDSILNLWNLQTIELSNQGPYSIDSISFPVQMWKLKHLRHFNVGFHVKLRGRCSELDQKMWNLQTISRLVLNEQATSLIKKGTFPNIKRMEINDDEDELPNLLQSLELLKHLNKLVICTRKSPSEVTHILQNLKTNGVEVVIKDNVTWKTFFYRLQGTIL*

CDS Sequence:
>Vu_12944.1

ATGGCAGAGAGTGTAGTTTCTTTTGTTTTAGATCACTTATCCCAGCTTGCCGCACGCGAAGCTAACTTGCTCTATGGCGTGGAGGACAGAGTCCAGTCTCTCCAGTACGAACTTCAAATGATCAAAGAGCTCCTCAATACCACAAAGACAAAGAAGGGAATGGAACATACTGTTTTCAACCAAATCAGAGATGTGGCCCACTTGGCTGAGGATGTCATCGACACATTCGTAGCCAAAGTTTCCATTTACAAGAGGAGAACCATTCTGGGAAGGATGCTCCGTGGCTTTGGCCAAGCAAGGTTGCTCCACGACGTAGCCCAAAAAATAGACAAGCTCAAATCCACTCTCAACGAGATACGCGACAACAAGGACAAATATGATGCTTTTAGAGAAGCCACTAATCAATCCACAGCAGAAGAAGAGGAGGAGAAGGAAAGGATGCAATCGCTGCACAAGCTAAGAAGAGACGTGGAGGAAGAACATGTTGTTGGCTTTGTCCAGGACTCCAAGGACGTCGTCAAGCGACTTCAGGAAGGTGGTTCGAATCGTAAAATTGTCTCTATCGTTGGCATGGGGGGATTGGGGAAGACCACCCTTGCCCGAAAGGTCTACAATAGCAGCATTGTGAACGACCGCTTCGATTGTCGTGCGTGGGTTTATGTCTCAAACGAGTGCAGAGTCAGGGAGCTTTTGCTTGGTCTTCTGAAGCATTTGATGCCAAGTTTTGAACAACAACGCAAAAGCAGCAAGAAAGGTAAGAAAAGCTCTGGAGACATTAACAGCCCAAGTGAGGAAGAGTTGAAGAAACAGGTGTGGAACTGCTTGGAGAGGAAAAGGTATCTTGTGGTGGTAGATGACTTGTGGAAAAGGCGGGATTGGGATGAGGTGCAAGATGCTTTTCCGGACAACAACAGAGGCAGCAGAATATTGATAACTAGTCGTTTGAAAGAGGTGGCCTTGCATGCTGGTGATGATGTTCCTCACTATCTTCAATTCCTGAGTGAAGAAGAAAGTTGGAAGCTGTTTTGCAGGAAAGTGTTTAAGGGTGAAAATCGCCCTTCTGATTTGGAGACCCTGGGAAAGCAGATGGTTCAAAGTTGTCGTGGTTTGCCGCTCTCCATCATTGTTTTAGCAGGACTGCTAGCCAAGAAAGAAAAATCACATAGAGAATGGTCTAAAGTGGTAGGTCATGTTAATTGGTATCTGACTCGAGACGAGACCCAAGTGAAGGATATAGTTCTGAAGCTCAGCTACGACAACTTGCCAAGGAGACTAAAACCATGTTTTCTCTATCTTGGGTTATTTCCTGAAGATTTTGAAATACCTGTTACGCCATTATTGCAAAAATGGGTTGCGGAGGGTTTCATACAAGATACAGGAAATAGAGACCCAGATGATGTTGCGGAAGACTACTTGTACGAGCTCATCGATCGCAGTTTGGTCCAAGTAGCAAGAATGAAGTCTAATGGAGGTTTGGCAAGGTGTCAAATTCATGATCTTCTTCGAGATCTTTGCATATCAGAGAGCAAAGAGGAGAAAGTGTTTGAAGTTTGCACAGACAATAACATTCTAATCCCTACCAAACCTCGCAGACTGTCCATTCACAATAACATGGGTCACTACATTTCTTCAAGCAACAATGACCATTCATGTATTCGTTCCTTGTTTTTCTTTGGGCCATATTATGATGTTGGTGGGAGACAGTGGAAATGGCTTTTGGACGAGTGCAAATTGGTTCGAGTGTTAGACTTTGGATCTAACTCGTGCCGAAAGATCCCTTCCAATTTAGGGAACTTCACCCACCTAAGGTACTTGAGAATAGAGTCAGGTGATATTACATTTGTTCCAGATTCAATACTTAACCTTTGGAATCTACAAACCATTGAGTTGAGTAATCAGGGGCCTTATAGCATTGATTCAATTTCTTTTCCTGTTCAAATGTGGAAACTCAAACATTTAAGACATTTTAATGTTGGATTTCATGTCAAGTTGAGAGGAAGATGTTCAGAATTAGATCAGAAGATGTGGAATCTTCAAACCATCTCTCGTCTTGTACTCAATGAGCAAGCAACATCTCTAATAAAGAAAGGAACATTCCCCAATATTAAGAGGATGGAGATTAACGATGATGAAGATGAATTACCTAATTTATTGCAAAGCTTAGAACTATTGAAGCATTTGAATAAATTAGTGATTTGTACAAGAAAATCTCCCTCAGAAGTGACTCACATCTTACAAAATTTGAAAACAAATGGAGTTGAAGTTGTTATCAAGGATAATGTTACTTGGAAAACATTTTTTTATCGATTACAAGGAACAATACTCTGA

Promoter Sequence:
>Vu_12944::LG3:21733587-21735587(-)

TACATATATATTATTCTATTACGTCTAATATCATAAATATAAATATTCTAAGGTAAATGAATACAAGTTGCAATGCACATAGCAGGAAGCTTTGACTAATATGACATTATATATATAAATATAATTAAAATATATATATAAGAAAGACTTTGCTGATTATATTTAATCTTTTAACTATTACAGAGTTGAATAACATGAAATTTAATTTGAAAAATGAATATTGTGTACATGTATTGTTTAATATAGTATAAATGACTTGACAAAGAATAACAGTGATTGATATAATTTAATATAGTGCAGATGACTTAACAAATGATAATAGTGATTCAGTATGATTTGTTTAATGTTTATTTAAAGAAATGATTTATATAAGATTTTATTGTATTATCCGTTTTTGTTAGATTACTAATTTAAATATCAGAGTGTCTTTGATAGATATTTATCTTGGTTTAGAGTTTGAACACTAAAAACATAAACGAATTTGATTAAGTGAGTTCAAAAGAACATAAACGGATCAAGAAAAAAAATGTAAATGAGTGTTTGGTAGTTAAATAACATGAAATGTAATTTGAAAAATGAATGTGTACACATATAGTTTAATACAGTGTAGATGACTTGACTATTCTTTGTTCAATGTTTATCTAAAGATGTGATATAATAACAACTCTCTTCTAGAAGCTTACCATTGTGTTGTTGTTATGGATGAATATTTGGAGCTGCGTCTAAATAGATGTAACATCAAGACCTTCATTTATGTTTATTTTGTTGACGACCTTCGTATATATACTTTTGTATATAAATAACTATAAAGAAAAACATATTTGAGTGTTATAATATTAAAATGTTTTAAAATTTTTAAAAAAATAAGAGAAATACGTTGATGATTTAGCATTGTTTATACAAACTAAATTGAAACAACAATACGAAATATTAAAAGAAAAATCTAAAAATTGTTTGTAGGAAACCTTGACTCAGAAAAATAATGCAATACAATTAACTGTAAACGAAAAAATTGATTGAAATTCGAAAAGAAAGTTTTCCTATTATCATAGTTGAAATTGAGAAAAGGTTTGAATGAACTACATTCAAATATTTAAACAACTAATTTTAGACACTTAAAAATATAAATATTAATGATTATAGTGATTAGTTTAGATAATAATTTATAAATAAAAATTATTGGTTTTTAAAATAATTACTATTAAAAATAAAAAATTATAATTAGTAATTTATTAGAGCTTAAATTGATCATTAACATTAACTATCAAAATTTTAACTATTAAAGAAATTAGTATTTAAATTGATCAGTAATTAATATATTAAATCAATGTTGGTCTTTTATCAATATTAGTATGAGTTTTAGTAAATAAATTCATTTATTGTCTTTAAGAAACTAATATGTGTTATAAGTTTTTGTTTTGTCTTTTAATTCTTATTAAAAAATTAAATTAAATTCTTAATTTTTATTTGATTCAATTTAACTTTTTAATTTTTAAATATGATTCAATTAAGTTTTTTTTATATATATTAACGTTAAACTTTTGTAAAAATTTATATATTAATCATTCTATCTAAGAAAATAAAATAAATTTAAATGTTTAAACTTTTAGATGAAATAATTTGATATATAAATGTTAACATATAAATATAATAAAAAAGAGCTAATTATTGTGGAGAATGATGTTGATGTATAAATATTGTAAGTGAAATGAGTTGAAGGTACAGTGCACATAACAGGAAGGTGCCTAACTACCGATAGTATGAACTTAGCAACTTTGAAAATTAAATATTGTATCGTAATAAATGGAAAAATAAAACCTCAAGTCTTCAGCCAAAGTCTTTATAAATTCTTTATTGCAATCACTTTTCATAATATATATATTTGGACATTCTTTCCCTCTTATTGCAAGTTACACAATATTGCTTTAAATTCCTCTTATTCTTCTTCCAACACCAACCACAAACCTAGTATCGAAATCTAAACGCTCGTCCACGCTGTA

Gene Sequence:

>Vu_12944(-)