Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12912 LG3 21384621 21387058 PREDICTED: scarecrow-like protein 3 isoform X1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/T 21384708 5_prime_UTR_variant
A/C 21384721 5_prime_UTR_variant
C/G 21384833 5_prime_UTR_variant
G/A 21384954 splice_region_variant
T/C 21384969 downstream_gene_variant
A/T 21385000 downstream_gene_variant
G/A 21385039 downstream_gene_variant
T/A 21385058 downstream_gene_variant
A/G 21385061 downstream_gene_variant
T/C 21385133 downstream_gene_variant
T/C 21385157 downstream_gene_variant
C/T 21385195 downstream_gene_variant
C/G 21385218 downstream_gene_variant
G/C 21385220 downstream_gene_variant
C/T 21385221 downstream_gene_variant
T/A 21385243 downstream_gene_variant
G/T 21385268 downstream_gene_variant
G/A 21385603 synonymous_variant p.Gln53Gln
A/C 21385604 missense_variant p.Ile54Leu
T/C 21385627 synonymous_variant p.Asp61Asp
A/T 21385648 synonymous_variant p.Ile68Ile
T/G 21385651 synonymous_variant p.Ala69Ala
A/G 21385741 synonymous_variant p.Leu99Leu
A/G,T 21385744 synonymous_variant p.Ser100Ser
G/A 21385877 missense_variant p.Ala145Thr
T/C 21385933 synonymous_variant p.Gly163Gly
A/G 21385972 synonymous_variant p.Lys176Lys
C/T 21386041 synonymous_variant p.Phe199Phe
G/A 21386059 synonymous_variant p.Lys205Lys
C/A 21386067 missense_variant p.Thr208Asn
A/G 21386134 synonymous_variant p.Leu230Leu
G/A 21386215 synonymous_variant p.Leu257Leu
C/A 21386216 missense_variant p.Gln258Lys
A/T 21386320 synonymous_variant p.Ala292Ala
C/T 21386329 synonymous_variant p.Thr295Thr
C/T 21386349 missense_variant p.Thr302Met
T/A 21386879 3_prime_UTR_variant
A/G 21386958 3_prime_UTR_variant
T/A 21386967 3_prime_UTR_variant
T/G 21386988 3_prime_UTR_variant
A/T 21387043 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12912.2
MMSLSPSLGSPNNILLREMKSEERGLYLIHLLLTCANHVAAGNLENANATLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTRVTMLSEEILVQKLFFELFPFLKVAYVLTNQAIVEAMEGEKVIHIIDLNAAEATQWIALLQVLSARPEGPPHLRITGIHQKKEILDQVAHRLTEEAEKLDIPFQFNPVVSKLETLDFDKLRVKTGEALAISSILQLHSLLAFDDEALRRKSPRLLKGSNGIHLQRVLPLSQTTLGDMLEKDMINGYTPSPDSTSSSPASFTTSNSMNTESFLNALWGLSPKVMAVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMIFGEEIKNIIACEGPDRKERHEKLEKWFQRFDQAGFGNVPLSYYGMLQARRFVQSYGSEGYRMRDENGCVLICWQDRPMFSISAWRSRK*

>Vu_12912.1
MMSLSPSLGSPNNILLREMKSEERGLYLIHLLLTCANHVAAGNLENANATLEQISLLASPDGDTMQRIAAYFMESLADRILKTWPGIHRALNSTRVTMLSEEILVQKLFFELFPFLKVAYVLTNQAIVEAMEGEKVIHIIDLNAAEATQWIALLQVLSARPEGPPHLRITGIHQKKEILDQVAHRLTEEAEKLDIPFQFNPVVSKLETLDFDKLRVKTGEALAISSILQLHSLLAFDDEALRRKSPRLLKGSNGIHLQRVLPLSQTTLGDMLEKDMINGYTPSPDSTSSSPASFTTSNSMNTESFLNALWGLSPKVMAVTEQDCNHNGPTLMDRLLEALYSYAALFDCLESTVSRTSLERLRVEKMIFGEEIKNIIACEGPDRKERHEKLEKWFQRFDQAGFGNVPLSYYGMLQARRFVQSYGSEGYRMRDENGCVLICWQDRPMFSISAWRSRK*


CDS Sequence:
>Vu_12912.2
ATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATATCTTGCTTAGAGAAATGAAATCAGAGGAAAGAGGTTTGTACTTGATCCATTTGCTGCTCACTTGTGCAAATCACGTAGCTGCTGGTAATCTTGAAAATGCAAACGCCACACTCGAGCAGATTTCACTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATAGCTGCGTATTTTATGGAATCACTTGCAGATCGGATTCTGAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACCAGAGTGACTATGCTATCAGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATATGTTCTCACAAATCAGGCCATCGTTGAGGCAATGGAAGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTGCTGAAGCTACGCAGTGGATTGCCCTCCTCCAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACTGGGATTCATCAGAAAAAAGAGATTCTGGATCAGGTAGCTCATAGACTAACTGAAGAGGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTAGTCAGCAAGCTAGAAACTCTTGATTTTGACAAACTTCGAGTGAAAACTGGTGAGGCACTAGCAATAAGTTCCATACTCCAATTACATTCCCTTTTGGCCTTTGATGATGAAGCCTTGCGGAGAAAATCTCCTCGTCTGTTAAAAGGCTCAAACGGAATTCACCTGCAAAGAGTCCTGCCACTGAGCCAAACCACATTGGGTGATATGCTTGAGAAAGACATGATCAATGGGTACACTCCAAGCCCTGACTCAACCTCGTCATCACCAGCATCTTTTACCACTTCCAATTCAATGAACACGGAGAGCTTTCTCAATGCCTTATGGGGTTTATCACCAAAGGTCATGGCTGTGACAGAGCAAGACTGTAACCACAATGGTCCAACTCTGATGGATAGGCTACTTGAAGCACTATATTCTTATGCAGCATTGTTTGACTGTTTGGAATCAACAGTCTCAAGAACCTCATTGGAGAGATTAAGGGTGGAGAAGATGATTTTCGGGGAGGAAATAAAGAACATCATTGCATGTGAAGGGCCTGATCGAAAGGAGAGACACGAAAAGCTTGAAAAGTGGTTCCAGAGATTTGACCAAGCTGGGTTCGGTAATGTGCCTCTGAGCTACTATGGTATGTTGCAAGCAAGGAGGTTCGTCCAGAGCTATGGCTCTGAAGGATACAGAATGAGAGATGAAAATGGCTGTGTATTAATTTGCTGGCAGGATCGACCAATGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA

>Vu_12912.1
ATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATATCTTGCTTAGAGAAATGAAATCAGAGGAAAGAGGTTTGTACTTGATCCATTTGCTGCTCACTTGTGCAAATCACGTAGCTGCTGGTAATCTTGAAAATGCAAACGCCACACTCGAGCAGATTTCACTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATAGCTGCGTATTTTATGGAATCACTTGCAGATCGGATTCTGAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACCAGAGTGACTATGCTATCAGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATATGTTCTCACAAATCAGGCCATCGTTGAGGCAATGGAAGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTGCTGAAGCTACGCAGTGGATTGCCCTCCTCCAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACTGGGATTCATCAGAAAAAAGAGATTCTGGATCAGGTAGCTCATAGACTAACTGAAGAGGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTAGTCAGCAAGCTAGAAACTCTTGATTTTGACAAACTTCGAGTGAAAACTGGTGAGGCACTAGCAATAAGTTCCATACTCCAATTACATTCCCTTTTGGCCTTTGATGATGAAGCCTTGCGGAGAAAATCTCCTCGTCTGTTAAAAGGCTCAAACGGAATTCACCTGCAAAGAGTCCTGCCACTGAGCCAAACCACATTGGGTGATATGCTTGAGAAAGACATGATCAATGGGTACACTCCAAGCCCTGACTCAACCTCGTCATCACCAGCATCTTTTACCACTTCCAATTCAATGAACACGGAGAGCTTTCTCAATGCCTTATGGGGTTTATCACCAAAGGTCATGGCTGTGACAGAGCAAGACTGTAACCACAATGGTCCAACTCTGATGGATAGGCTACTTGAAGCACTATATTCTTATGCAGCATTGTTTGACTGTTTGGAATCAACAGTCTCAAGAACCTCATTGGAGAGATTAAGGGTGGAGAAGATGATTTTCGGGGAGGAAATAAAGAACATCATTGCATGTGAAGGGCCTGATCGAAAGGAGAGACACGAAAAGCTTGAAAAGTGGTTCCAGAGATTTGACCAAGCTGGGTTCGGTAATGTGCCTCTGAGCTACTATGGTATGTTGCAAGCAAGGAGGTTCGTCCAGAGCTATGGCTCTGAAGGATACAGAATGAGAGATGAAAATGGCTGTGTATTAATTTGCTGGCAGGATCGACCAATGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAA


Promoter Sequence:
>Vu_12912::LG3:21382621-21384621(+)
TTATTATATATATAAACTATACTCTCAATAATTAAAAGTAATGTAAGAGTTATTCTTCTTCTTAGTGCTTATTTTGGATATGATACTTTGGATATGAACATATGTATAAGAAAATTACGTTTTTAATTAATTACCGATAACAACACTGATACGATAATGTTGATCATGACAATCACGATAAAATATAATAAATTAAGAAAAAATATTAATATTAATTTATTTTTTAAAATTAAATCATCTTAAAAAAATTAGAATTTATGTTCGATTAAACAGTTTCTATTTATCACTTTTTTATTTTCTCACTAGTACATTTGATTTGTTCCCTGTTTATTTACTAAACACTGTATTTTCTTGAAAAATACACGAAAATCAATCAAAGAACACTCCAAAATCCTAAAGTTAACTTTCACACGCAACATTATTTCTTGTTGGTTTGCATAGAAAAGTTAGCATCTGAATTTAGAAATGGAATCTCGTCAGAAATACCAACAATCAATTTCAGTATAAAAGACCGAAATGAAGAATAAAGCAGTAAATAAAAGAAAGGAGAAAAAAACGAAAAGAGCATAGAAGATCTGATGAGATAGTATGTGAGTTTTGGCAAATTGGGAATTCGGAAAAAGAATAGAGAAATAGAGATAAAAGTTGAATCTGGTTTTGGAGTTTTGTAGAAGGTGGTTGTGTGTTTGTCGTAATAGGAGAAGATAATCCAATTGTATAGTCATTGCTTTTGAAAATAAAACAAAAGTTTGATTTGGAATTATGTTAGGAACTCTCACTCTCTCAGCACACTCATCCCACTCACGACCAAAACCGAGGGGTAACGTTGTTTGTCTTTGTCAAAGCATGTTTGTTTTTACGTACCATTTCGGAATATTATAACTCTTTCATTCCCTACCCACCTAAGCTTCAACACAAACACAACCACATTAAACTACAACTTTTTCTCACAGACAAAAACCACCGCATTCTTTTATCTTACTGTAACTTTTATCTTACTCAACATTTCCTAATGAAATTAGTTATTACTAATGTTTTGGATTAATCTCATGATTTTATTTATTTTTAGAGATGAGATGTTTGGTACAATTTTATTATTTTTATAGTTTCGGTTTAAAAGTTAAGAGGTTTCTTATTATGAATTTCTAACTGGTGTCAAATTAATGAGTTATGAATAAAATTATATAAACTTTTATGTATTTTTTGTTCATATATTTTCCATGTTGTTCATTTTTAATTAAGATGAAACTGCCTTGAATTTTTAATATTTTTTTTCTTTAGGTTGAGTCTCTCCATGTTGAATCCTAGAGGAATAACATACTATTGCACAATGAAAACAAAAAAATGTAAAGAAATAAAATAGATGATAAATAATAATGTTCTCTTCTGAAAAAAAAAATGACATGTCTATTGGAATTAGAAAAAACCAACAGCAAATAAAATCCAAAATCTCTTTTTCTTATGATACTTTGTGCACCAGAATAAAATCAAAGCAAGAAATTTAATTTTATAAACTCTCACATTAAATTTCTGATAAATACAACATTGTTTAAATTAATTATCTTATTCAAAAGTGTAATCCATTTTAGAATTTAAAAACATGTGATAGTTTTATTATTCAATATTTTGAAGTAATAATTTTTTTTAATTATTATTAATCTCAATTCCTAAACTTTGAAATTACATAAATTATTGGATATAGTGAAATAAACCTTTGATTCAAAATCGGAGAAGGCTGGTCTTAGTAATCACTTATTCTGTCCCTACTTTTATCTATAAAAATAAAACAAAAAAAGTTTTATGCATATAATAGAATAAAAGAATCTACATATTGTTGGGGTAATTATAGATAAGATGTGGTAATTTTGTTAATGTTTAGAATAATTAATTTAAAATTAGTGTGAAGTGAAATGTTTAGTAAACTAAAACCACGACATTAAAATGAAACTAAAAAGAAATGGAAAAATGAAATGTAACTGTATGTTTAGCCTTTACAGGAA


Gene Sequence:
>Vu_12912(+)
AGATAGAGAAATTTCCAAGAGTCAGAAATTCCACACAGCACTGAGGTGTGAAGGACAACAAAACAATAAAGACAAAAGGGACCCTTCACGCATTGTCGACAACGTAGTCATGAACAAGTAGCTGAAACCAGAAGAAGGGTCCAAACATTGAAACTCACTCCCAAAGAAAGCAGAACAACCAACCCATTATGGTTCTGGTTTTTTCAGTGTTCCGAGAGGCAAGTTTTGGATTTTTCTGGGGGTTTCGTCTGGATTCTTCTTCAATTTCAAAACCCTCCAAGGGATAAGCGTTCTCTCACTGCAATGCGTTCCTCTTGTTGCTGACCTCGTTTCGGTAGGTTCTCTCTTTTTCTTGTAACTGCTTCCATGTTTTTCTCCGAGCTTTTGCTGAATTGATGTAAAAGTCTTGAACCTTTTGGTTTTTGAGGTTATAAAACTGAAAATAAAGCTTGAGGGTTGTTAAGCTTGTGATCGAAGTTTGAACTTGGGCTGCGCAGATTCTTATGCACAAATGGTTTTTTTTTTTCTTTTTGCTTTTCCTACTTTGTTTTGAATTTGTTCTGCCTTTCTTATTCTGTCTTCATTCATTATTAGCTTCTGCGTATTTGGCTCATGTGTTGTATTGTAAAACCCGTGATTTTGTATCTGAATGAATCGAAATTTTGAAGAGTGTTTTCTTGTCTGATAGTTATTTTGTCACTACATTCTGTTTCTCTTCACTGTTTGCAAATTCCTAAGATTGTTGTTGTTATTGTTACATGCGATTCGTGTGGCTAGAAGAAGGGTAGTCTTTTGTAAGTTCTTCACCCTTGCAGCTCTTCTCCATGATGTCACTTTCACCTAGCTTAGGTTCTCCCAACAATATCTTGCTTAGAGAAATGAAATCAGAGGAAAGAGGTTTGTACTTGATCCATTTGCTGCTCACTTGTGCAAATCACGTAGCTGCTGGTAATCTTGAAAATGCAAACGCCACACTCGAGCAGATTTCACTGCTTGCTTCCCCTGATGGGGATACTATGCAGCGAATAGCTGCGTATTTTATGGAATCACTTGCAGATCGGATTCTGAAAACATGGCCTGGGATCCACAGAGCCCTCAACTCAACCAGAGTGACTATGCTATCAGAAGAAATTCTTGTTCAGAAGCTCTTCTTTGAGCTTTTCCCTTTCTTGAAGGTGGCATATGTTCTCACAAATCAGGCCATCGTTGAGGCAATGGAAGGGGAGAAAGTGATTCACATAATTGATCTCAATGCTGCTGAAGCTACGCAGTGGATTGCCCTCCTCCAAGTTTTGAGTGCTCGTCCCGAAGGTCCTCCTCATTTGAGAATCACTGGGATTCATCAGAAAAAAGAGATTCTGGATCAGGTAGCTCATAGACTAACTGAAGAGGCAGAAAAGTTGGATATACCATTCCAATTCAACCCTGTAGTCAGCAAGCTAGAAACTCTTGATTTTGACAAACTTCGAGTGAAAACTGGTGAGGCACTAGCAATAAGTTCCATACTCCAATTACATTCCCTTTTGGCCTTTGATGATGAAGCCTTGCGGAGAAAATCTCCTCGTCTGTTAAAAGGCTCAAACGGAATTCACCTGCAAAGAGTCCTGCCACTGAGCCAAACCACATTGGGTGATATGCTTGAGAAAGACATGATCAATGGGTACACTCCAAGCCCTGACTCAACCTCGTCATCACCAGCATCTTTTACCACTTCCAATTCAATGAACACGGAGAGCTTTCTCAATGCCTTATGGGGTTTATCACCAAAGGTCATGGCTGTGACAGAGCAAGACTGTAACCACAATGGTCCAACTCTGATGGATAGGCTACTTGAAGCACTATATTCTTATGCAGCATTGTTTGACTGTTTGGAATCAACAGTCTCAAGAACCTCATTGGAGAGATTAAGGGTGGAGAAGATGATTTTCGGGGAGGAAATAAAGAACATCATTGCATGTGAAGGGCCTGATCGAAAGGAGAGACACGAAAAGCTTGAAAAGTGGTTCCAGAGATTTGACCAAGCTGGGTTCGGTAATGTGCCTCTGAGCTACTATGGTATGTTGCAAGCAAGGAGGTTCGTCCAGAGCTATGGCTCTGAAGGATACAGAATGAGAGATGAAAATGGCTGTGTATTAATTTGCTGGCAGGATCGACCAATGTTTTCAATATCAGCTTGGAGATCTAGGAAGTAAGTAAGAGAGTTCAAGGGGTAAATTAATGACCTTTTTTTTTTCTTCTTTTCATTGCATGAGAGTGTTTTATCTTTTGGTAATGACTATTCTTCAAGATCGGTTTTTAGAGATACCCTTTATTCATTGCCTGGTAAAACCTCATAAAAAGAGAAACTTGGGAAGAGATAGAGAAAGGTTAGAAGGACATAAGAACAGAACAGAGGATTTAAACTTGGTTGTTTATGGTTTGAATTTTTTACTGCTGAT