Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12891 LG3 21221053 21222493 transcription factor bHLH121
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   cellular iron ion homeostasis, iron ion homeostasis
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   protein binding, DNA-binding transcription factor activity, protein binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, sequence-specific double-stranded DNA binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein dimerization activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, protein binding, protein binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, protein binding
SNP Position Effect Amino acid change
T/G 21221141 missense_variant p.Val30Gly
G/A 21221203 upstream_gene_variant
A/G 21221229 upstream_gene_variant
A/T 21221399 upstream_gene_variant
T/C 21221447 upstream_gene_variant
A/G 21221469 upstream_gene_variant
C/T 21221490 upstream_gene_variant
A/T 21221752 upstream_gene_variant
A/T 21221758 upstream_gene_variant
G/C 21221875 missense_variant p.Gln104His
G/A 21221900 missense_variant p.Ala113Thr
T/A 21222052 synonymous_variant p.Pro163Pro
G/C 21222174 missense_variant p.Ser204Thr
G/A 21222189 missense_variant p.Arg209His
T/C 21222211 synonymous_variant p.Thr216Thr
T/C 21222311 upstream_gene_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12891.1
MDCTAARRTQKADREKLRRDRLNEQFIALVNILDPDRPKNDKATVIDDTIQLLQDLTSQVSKLKDEYAALHEESCELAREKNDLREEKASLKSDIEKLNCQYQQQLRTVSPWTAMDHSVMVVPPSYPYPVPMPIPPSPIAMQPYPFYANQHSAIIPNPCSTYVPYLVPNTLVEQQSIQHIAPPLHPGFQSHMSGKQESRNKCKESMVEKREDSNDVTANRTSGFSADQDLSSGQIKSSELSRKQSSCTEVISLDRCSSPRSIQESSSSSVVHEHKG*


CDS Sequence:
>Vu_12891.1
ATGGATTGTACAGCTGCAAGAAGGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGGGATCGACTCAATGAACAATTTATAGCGCTGGTCAACATTTTAGATCCTGATAGGCCCAAAAATGACAAAGCAACCGTTATAGATGATACCATTCAATTGCTACAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATGCTGCACTACATGAAGAATCTTGTGAGTTGGCTCGCGAGAAAAATGATCTTAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTAATGGTAGTTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTTCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAACCCTTGTTCAACATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAGCACATAGCCCCACCTCTTCATCCAGGTTTCCAGTCCCACATGTCGGGTAAACAAGAGTCCAGAAACAAATGCAAGGAGAGCATGGTTGAGAAACGTGAGGATTCAAATGATGTCACTGCAAACCGGACTTCCGGGTTTTCTGCAGACCAGGATTTGTCATCTGGGCAAATAAAATCTAGCGAATTGTCAAGGAAGCAAAGCAGTTGCACTGAAGTGATTTCGTTAGATAGGTGCTCATCACCTAGGAGCATTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGGATAA


Promoter Sequence:
>Vu_12891::LG3:21219053-21221053(+)
TAGGTTGAAGTTGTCATGTTCGTTTCTCAGTTGCCCCTCTTTGCTACCAAGTATTGCATGTTGGCTGTAGCCCATTTTAATAGGTTTTGCTATTGTGGTTAGATGATATTGAGTGACATGCTTAGTGCACTAAGTTCTAGCCTACACATTTGGCTAAATTGATGTGTTGTTCGATTTTGGTTGAGTATGATGAGTTGCTTGTGGAAAGCCTTCAATTTGACTTAATACTAATTTAACTCAATGAGATGCTAGTTTTGCAAGGGAAGAGTTTTAGGTATTTGTCGATTTTGTTATGTATGCTACTTATTGCAATTTGGAGATTCTTCTTATTCTTTTAAAGGAAAGTTTTCATATGTGTCTTTAGGATTATGACAATCGATGCACCCATTTTAGGATAAACGACGATGATACAACAATTATGTTTTTAGTAAGTATTATGAAACTTGTGACAATGTAAAGATTTTTTATACAACTATGTCAAATATTTTTATTTGAAATAAGAGTGATTCTATTAAAGGATTAAAAAAAATTCACAAGAAAGAATTTATATTTTACAAAATTAATTTTCAAATTGCTTATGAAAATCGATAACATATATATTTTTAAGAAGATTTTTCAATACTCAAATCAATAAAAAAAATAGAAAAATTATGGAATATGTGAATGTTAAAAAATATGGTGAGTATTTCCTCAAAAGTTAATATATAAATGATTACTTAGTGTTTGAAATTTGTTACATTGTGATAATGCAAATATGTCCAAATTGTCCGGTTAATATATAGAAGTGTAATAATAATGATTAAGACATATAATAAAAAATTATATACATACATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTTATTATGTATTTTGTTGAATATAAATTTTGTTTGTTATGTGAATTTTATATGGACGATCTCACTTATATTTGAAAGGTTAAAATCAGGAGGGGCATGTATGCATTGCGATCCCTGCAAAATTCTGTAACCAAAAGCAGAATTGCGAAATACATCAACCCTAAAGAATATGCTTATGTAGGTATCTCCTCTCTAACACAACCCATTAGGAATAGTAGAATGCAAGCGACCTTTACACTAAAAACAATGCCAGTCACTTGCATTTCTGATTAGGAACCGATTCCAATTTTTCTTTTTTTGTCAAGAAGAGACAGCAAGGGAAAGTGAAGAACAGTAGATTTTACCCGTCGATTTAGCAAAATTATAGATCATCGAACATAGATAACGAGGTAAAATCTCTGATCATAGCTTCTCTATCTAGCTATGTTTTTTTTTTTTTTTTATTATCTAACGTTCTACACATATCCTTTTTCTGAATTCCTTCCACGAATTTGAGCTACCCCGTTCTTGTTTCCAACCCAATTACGGGTACATCATTTTTATCTCACTTTGTTGTTTCCATAGGATTTTGTTCTGTACTCCTGTTGCAACACTATGCAGTAAATTGATTGTACATTGTGAGATATTGTTTAAAGGCCCAAAGTGACTCTGTTGTTGTGCTTTGTCTTATAAGAAAAATTAAGTTCAGTTTGTCAATTATCATTGTACTGTTTGATAATAGTTTCAATGCATATTGTCATTAGATAATTTTTTAGCTGGTAGCAGTAATGCATGTCGACAATTTTGCTTGTTCCTAGATCCTATTCTTCCTTAAGCAGTAACTGAATAACGCTAGTATTGAATTAAGTGAAGAAAAATAAAAGCTCCCGAGAGTTGTTGAACTGGAATGACTCTGCAGGAGTATTAGTTACTGAGAATTTAGATCATACTTATATAAAATTAGTACCTATATCTAAACAATGTGTTGAAAACTGAAATGCGTGTATTATGTTTGATAATTTTGGTTTTTGTTATTCTGCAAAGCTGAAATCAATGATAGAAACTTTGATTAAACTAAATTTCTTAAACTTATGTACCTCTGCCAAAGGTTTGAAGTTGAACCAA


Gene Sequence:
>Vu_12891(+)
ATGGATTGTACAGCTGCAAGAAGGACACAAAAGGCTGACCGAGAAAAGCTGAGGAGGGATCGACTCAATGAACAATTTATAGCGCTGGTCAACATTTTAGGTAAATCAAATTTCACAATCTTCCGTGAAAAAATTGTCATGAATTTTTATGTTTGTTGCTATTCCTGACTTACTAAAGGTATCCAACTGCCAGGTTCACTTTTGTTGAATGACCAATTGATAATAACTAAACCGTTGTAACTAACAGTACCCAGATTGTATTTGTTATGGCAAGTGTTAGCATTGGTTTGGATATTGTTAATGTCTTTAGTTTGGGAATTGACCTGATTGGAGTTTAATTATTTTCAACCACACGTCTCAGTGATTACTTTAGGTTATACATATGGTGATAGTTTGGATCTAACAAGTTGTTCCTCAGATATTCCTTAATATTTATCCGTGTGTTTGTCACTTGATGAGAACTGTTAAATCAGTACTTCTATTAAATTACTCTGCCTGTGGCGACTCTGAAGTGCAGATCCTGATAGGCCCAAAAATGACAAAGCAACCGTTATAGATGATACCATTCAATTGCTACAGGACCTTACTTCTCAAGTTAGTAAACTTAAAGATGAATATGCTGCACTACATGAAGAATCTTGTGAGGTAATATTTTCTCTTCTCTCTTTGATAAATCACCATGATGCTTTGGGACATTAAATAATCAAGGAAGTAATGACATTTTATTACTTTTCAGTTGGCTCGCGAGAAAAATGATCTTAGAGAAGAAAAGGCTTCTCTTAAATCAGATATTGAGAAGTTGAATTGTCAGTATCAGCAACAGCTCAGGACTGTGTCTCCATGGACTGCAATGGATCATTCAGTAATGGTAGTTCCACCATCATATCCATATCCAGTGCCAATGCCAATACCTCCTTCTCCAATTGCTATGCAGCCATACCCCTTCTATGCTAATCAACATTCTGCTATTATCCCTAACCCTTGTTCAACATATGTTCCTTATTTAGTCCCTAATACCCTTGTTGAACAGCAATCCATCCAGCACATAGCCCCACCTCTTCATCCAGGTTTCCAGTCCCACATGTCGGGTAAACAAGAGTCCAGAAACAAATGCAAGGAGAGCATGGTTGAGAAACGTGAGGATTCAAATGATGTCACTGCAAACCGGACTTCCGGGTTTTCTGCAGACCAGGTTAGTGTTGCTTTGCTTTTAAAGAAATCTAGTAACCTATAGGCTATAGCTGTGATAAAAGAGGTATGGATTCAACTGGTGTTTGTGTTTTGCGTTTTGCAGGATTTGTCATCTGGGCAAATAAAATCTAGCGAATTGTCAAGGAAGCAAAGCAGTTGCACTGAAGTGATTTCGTTAGATAGGTGCTCATCACCTAGGAGCATTCAGGAGAGTTCATCAAGTAGTGTAGTTCACGAGCACAAAGGATAA