Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12845 LG3 20916889 20920533 TMV resistance protein N-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
G/A 20917114 synonymous_variant p.Arg613Arg
C/T 20917115 missense_variant p.Arg613His
T/G 20917170 missense_variant p.Ile595Leu
G/T 20917267 missense_variant p.Asn562Lys
G/A 20917273 synonymous_variant p.Asp560Asp
G/T 20917292 missense_variant p.Thr554Asn
C/T 20917312 stop_gained p.Trp547*
C/T 20917313 stop_gained p.Trp547*
A/T 20917330 missense_variant p.Asn541Lys
C/T 20917338 missense_variant p.Glu539Lys
G/A 20917342 synonymous_variant p.Phe537Phe
G/C 20917350 missense_variant p.Gln535Glu
G/A 20917354 synonymous_variant p.Thr533Thr
A/G 20917387 synonymous_variant p.Asp522Asp
C/A 20917390 missense_variant p.Glu521Asp
C/T 20917411 synonymous_variant p.Leu514Leu
G/C 20917422 missense_variant p.Leu511Val
T/C 20917425 missense_variant p.Asn510Asp
G/A 20917431 synonymous_variant p.Leu508Leu
G/A 20917456 synonymous_variant p.Phe499Phe
C/T 20917468 synonymous_variant p.Arg495Arg
C/T 20917475 missense_variant p.Arg493His
G/A 20917495 synonymous_variant p.His486His
C/A 20917506 missense_variant p.Val483Phe
C/T 20917521 missense_variant p.Gly478Ser
A/G 20917529 missense_variant p.Ile475Thr
C/T 20917539 missense_variant p.Asp472Asn
G/A 20917583 missense_variant p.Ala457Val
T/A 20917596 stop_gained p.Arg453*
A/T 20917612 synonymous_variant p.Pro447Pro
C/T 20917632 missense_variant p.Val441Ile
C/G 20917638 missense_variant p.Asp439His
G/A 20917649 missense_variant p.Pro435Leu
A/G 20917651 synonymous_variant p.Ile434Ile
A/G 20917657 synonymous_variant p.Ser432Ser
G/T 20917664 missense_variant p.Pro430Gln
T/G 20917685 missense_variant p.Lys423Thr
T/A 20918070 stop_gained p.Lys369*
A/G 20918420 missense_variant p.Leu252Ser
T/A 20918632 missense_variant p.Arg181Ser
A/T 20918638 missense_variant p.Asn179Lys
G/A 20919069 missense_variant p.Thr81Ile
A/T 20919071 stop_gained p.Cys80*
T/A 20919206 downstream_gene_variant
A/G 20919226 downstream_gene_variant
C/A 20919333 downstream_gene_variant
T/A 20919459 downstream_gene_variant
G/A,C 20920101 downstream_gene_variant
A/T 20920107 downstream_gene_variant
C/A 20920178 downstream_gene_variant
T/G 20920180 downstream_gene_variant
G/T 20920206 downstream_gene_variant
G/T 20920245 splice_region_variant&intron_variant
A/T 20920333 missense_variant p.Met34Lys
A/T 20920387 downstream_gene_variant
C/T 20920520 missense_variant p.Gly5Asp
G/T 20920523 missense_variant p.Thr4Lys

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12845.1
MFGTGSEKVLQWRSTLNVIADMTGEHLKSEQGRDESKFIEELVSKIFMIVSPKYLSSDEHIGSGKIQGLMLDPPHREEINCTETVFEKMKNVRILIVRNTSFSHEPSYLPNNLRLLDWKNYPSQSFPSEFYPRKIGAFNLSRSPVLALEEPFKRFQLLTYMNISYCNMVTEFPDVSGAKNLRELRLDGCEKLVTIHESVGLLANLVFLSASECILLSKFVPTMYLPSLEYLSLNLCIKLAFFPEISGTMNSKLKINMLDTAITELPESIEKLTGLNYLDMTDCKELQHIPGSLFMLPNFVTLKIGGCRRLRESFTRFKGSHSVRPKLETLHFDNADLSEKDVRTIIYHFPNLKDLNISCNPVVYLPACIKESTNLTSLHLRYCDVLQEIPELPSRVQKVDAKYCYSLSSKSSNILWSQVRKEMKRLEVGMPESDIPEWFDHVNEGGFPVFTARRKFPAVVLALVFGVVDAKADREIMEGRWRTVGMHLFIEGERRRYHNFSVAENHVLLCNLRVLFSLEEWEDVGFGVDEDWKTVQVFCETNLSLCSWGVYVYKTETNMDDINFMTQHPSSSLVLSRHKMISDMDKIESKIISLNIPQMHREFHMWSTAARKLRSFKGESSRVLEKASRRVMALRGEEGRSGMNIEDERDKELDAQLDMLATAELDKHFHYPNNHTAEPFTSQYCRIL*


CDS Sequence:
>Vu_12845.1
ATGTTTGGAACAGGCTCAGAGAAGGTGCTCCAATGGAGGTCAACCTTGAATGTCATAGCCGATATGACAGGAGAGCATCTGAAATCTGAACAAGGGAGAGATGAATCCAAGTTTATAGAAGAACTTGTTAGCAAGATTTTCATGATAGTGTCTCCTAAATATTTGTCAAGTGATGAGCATATAGGAAGTGGGAAGATTCAAGGACTAATGCTTGATCCCCCTCACAGAGAAGAAATTAATTGTACTGAAACTGTATTTGAGAAGATGAAGAATGTTAGAATTCTCATTGTTCGTAATACGAGCTTTTCACATGAGCCTAGTTATCTCCCAAATAACTTAAGGCTACTTGATTGGAAGAATTACCCTTCACAATCCTTCCCTTCAGAATTTTATCCCAGGAAAATTGGGGCATTCAATTTAAGTAGAAGTCCTGTACTCGCACTGGAAGAACCATTTAAGAGATTTCAGCTTTTGACTTATATGAATATATCTTATTGTAATATGGTTACTGAATTTCCCGATGTGTCTGGGGCCAAAAATTTAAGAGAATTGAGACTCGATGGATGCGAGAAACTGGTTACTATTCATGAATCAGTTGGACTTCTCGCTAACCTTGTTTTTCTAAGTGCTTCAGAATGCATCCTACTCTCAAAGTTTGTGCCAACAATGTATTTGCCTTCTCTCGAATACCTTTCCTTAAACCTCTGCATAAAACTAGCATTCTTCCCAGAGATCAGTGGAACGATGAACAGCAAATTGAAGATTAATATGTTGGATACAGCTATTACCGAGCTTCCAGAATCAATTGAGAAACTTACTGGGCTTAACTATCTTGACATGACAGATTGCAAGGAACTTCAACATATACCAGGTAGCTTATTTATGTTGCCAAATTTTGTCACATTAAAAATTGGAGGATGTCGTCGGCTTCGAGAGTCATTTACAAGGTTCAAAGGAAGTCATTCAGTTCGCCCAAAACTTGAGACATTACATTTCGACAATGCTGATCTATCAGAGAAAGATGTTCGTACGATTATTTACCATTTTCCTAACTTGAAAGACTTAAATATATCGTGCAACCCAGTTGTGTATCTCCCAGCATGCATTAAAGAATCTACTAACTTGACAAGTCTTCACCTGAGGTATTGTGATGTGCTTCAAGAAATTCCAGAACTGCCGTCAAGAGTTCAGAAAGTAGATGCAAAATACTGCTATTCCTTAAGTTCGAAGTCATCAAACATCTTGTGGAGTCAGGTCCGTAAAGAAATGAAAAGATTAGAAGTGGGGATGCCAGAAAGTGACATTCCAGAATGGTTCGACCATGTTAATGAGGGAGGGTTTCCTGTTTTCACTGCCCGTAGAAAGTTCCCAGCTGTTGTTCTAGCTTTAGTGTTTGGTGTAGTGGATGCCAAAGCCGACAGAGAAATAATGGAAGGTCGCTGGAGAACTGTCGGAATGCACTTATTCATTGAAGGTGAACGCAGACGGTACCATAATTTCAGCGTGGCCGAGAATCATGTGTTGCTGTGTAACCTACGAGTTTTGTTCAGTTTGGAGGAATGGGAGGATGTAGGATTTGGGGTTGATGAGGATTGGAAGACCGTACAAGTTTTCTGTGAAACAAATTTGAGTCTATGTTCATGGGGAGTGTATGTCTACAAAACTGAGACCAACATGGATGACATCAACTTCATGACTCAACATCCAAGTTCCTCTTTGGTGTTGAGTCGTCACAAGATGATCAGTGATATGGATAAAATAGAAAGCAAGATAATAAGTTTGAATATACCACAAATGCATAGGGAGTTTCATATGTGGAGCACTGCAGCTCGAAAACTCCGCTCTTTTAAAGGTGAAAGTAGTCGAGTGTTGGAAAAAGCATCGAGAAGGGTCATGGCCTTGAGAGGGGAGGAAGGAAGATCAGGAATGAACATTGAAGACGAGAGGGACAAGGAGTTGGATGCGCAGTTGGATATGCTGGCAACTGCAGAACTTGATAAACATTTTCATTATCCTAACAATCACACTGCTGAACCCTTTACTTCACAATATTGCCGTATACTTTGA


Promoter Sequence:
>Vu_12845::LG3:20920533-20922533(-)
AAGAAAATAATGTGCCGCGGGTTCTGATCAGATTCCAAACTGGATGGAAGGAGTGAACGGTACCAACCAAGCAAGTCCTTAGACCGAAGAGAATCACCACCCTCATCAGACCTTTCAACGCAAACAATGTAAGTTAGCAAGCTGTTTTGAACATTGATTTCTTTAGTTGGAAGATAATGTTCCTCTATTGCTTTGGCGAATTCTGGATTTTGGTGTGCTGAAGTTGTTAGACATACACTAATCAGCGCGAAAATAAGAGCAAGAACATCAACACGGGGAAGAAGAAGTGGCAATGGAGGATTCTCCATAATCTCAGTCCCTGTTGCAACCCCAAGAACCCTAATTGCCCAATTAACTTTTCCCCAATTAAACACTTAAAATCTCAGTTCAGCACTTAAACATCCCACGTGGCAGAGAGTGAAGGCAGAGATCAGTGATCACGTGGCATCGCCCTTTGTCACATCCACAAAAACTTAACACCGTCCATTTTTAAGGACTAATACTCAGAGTTTCAAAACAATAAGGACTAAAAACCATCAAAGTTCTGAGTAGGGACTAAAAACAAAATCGTCTGATACTTCAGGGACTAAAAACATATTTAACCCAAATAAAAAATCAAAATTGACTTAGAATATATTTTTTAATATAAGATTATTTTTATAAATTTACATTTATATTTACTTAATATGTAATTTATTTAGGTAACAGAGGATAAAAATAAACTATTTAAAAAAATGAATTCTTATGCCGAAAAGATGAAAAACAAAAAATAGTGCTATTTATATAAATATTTGGTACAACATGTCATTGGAGTAAATAGTCAAAATTCCCATTTGTATTTTTATTTCTAACACCACAAAATAATACTTGGAACAAAGATAAAAAGAGGACATGATGAGTAATGGTTTATGAATATAAAAGAAGAGAGATAAAAAGAAAAAGATAAGTGTATAATAAATTTAGACAAAATGAAGGTTTTGATAAATATTTATTTATTTATTTTTGGATATGAATGTAATTAGAAACCACTTTATGTACTTTTGTATTTTGCTGATAAAAAAAAAGTAAAAAGAAAATTACTTCAAAAAGACTACGCGCTGGTAAACGAAAACCACCTCGACGGGATCAGAGTAAGCAACAATGTCGAATCAGGCCGCTCCTTGCCGTGGATTCACAGGCGGCCACCAGCTTTCTCAAAATCAATAAGAGGAGATCTGGTGCACTATAGTAAAGTCGTCCACATCCTGATTCAGTTTTCAATAAACATTTTAGATGTTCAAAGGCATAATGCGAGATGAATTTTATTCTTTCTCTATCATATTTATTACTTATTTTATAAGTAATTTATTCAATGATCATGCTTCATTATGTTATACTGTTTATATTATAGTTGTACAGTGATTTTGAATTAATCAAATGATACGTCGTGCATACCACGTTTTCATTATTTTAAATAAACTATTTTAGGCATAACTTGAGATGAGTTTTTCTCTTTTTATTATTCTTATTACGTAAAACCAACATTACTTTTCTTATATAAGTTGTAGCATGTAGTGTTTGAAATGCAGGATAATTGTATTGAAAGCTCATATATTGAGAATACAATGATGGGAAATGATGGTGCAATGTTTGAAACCAAGTGTAGGTATGATGTTTTCCTTAGTTTTAGGGGAGAAGACACTCGTCTCACATTCACTTGTCATCTCTATCATGCTTTGTGTCGGAAGGGAATTATCACCTTCATGGATGATGGAGAACTCAAGCTTGGAGAGCAGATTGGTCCAACACTTCTTAGGGCAATTGAAGAATCGAGCATCTCAATTGTTGTTTTATCAGAAAATTATGCAGATTCTTCATGGTGCCTTGATGAACTCGTGAAGATCCTCGAGTGTAAGGAGTCAAAAAACCAGCTAATTTGGCCAATCTTCTACAAAGTGAATCCCTCAGATGTGAGACATCAGAATGGAAGTTATGGTGAGGCCATGACTAAGCATGAAAAA


Gene Sequence:
>Vu_12845(-)
ATGTTTGGAACAGGCTCAGAGAAGGTGCTCCAATGGAGGTCAACCTTGAATGTCATAGCCGATATGACAGGAGAGCATCTGAAATCTGAACAAGGGTAAGTAATACGACATGAAGTAGCCTTATTCTATTAAATGATTATAAAAAATATATATTTACTGATGAATGTATATATGGATGATTGTTCATGTATTAGGAGAGATGAATCCAAGTTTATAGAAGAACTTGTTAGCAAGATTTTCATGATAGTGTCTCCTAAATATTTGTCAAGTGATGAGCATATAGTAGGACGAGAGTATCGAGTTAAAGAACTGAAATCACTTCTAAACCTTGAGTCTCCTAATATCACATTGTTAGGGATTCATGGAACAGGTGGAATTGGCAAAACCACACTTGCCAAAGCTTTGTATGACTCCATTTACAAGCAGTTTGAGCGTTCATGTTTTCTTTTCAACGTTAGAGAAAATTCAAATCAAATTAATGGTATAGAATTTCTGCAACAAAGGCTTCTATCAGAGATCCTTGAGGACAGTAAAATTCAGCTGGCAAGTAAAGCAGAAGGAACCAACAGAATAAAACGCAGTCTATATTCAAAAAGAGTTCTCATAGTTCTTGATGATGTTGATGACATTGAACAGTTTAAAAATTTGGCAGGGAAAAGATTTTGGTATGGTAAGGGGAGCAGAATCATTGTAACAACAAGAGATAAACAATTACTTGATGTTGGTAGGATCAACAACAGATATGAAGTGAAAGTGCTAAACAACCAAGAGTCTCTGGAACTCTTCTGTCAAAGTGCCTTTGGAAACAGTTGTCCCGAAACAAACTATGAAGATCTGTCAAATCGTGCAATAGGCTGTTGCAAAGGCCTTCCACTGGCCTTAAAAGTTCTGGGCTCCCATATGATTGGAAAAGATTTTGTTGGATGGGAGGATGCGTTAAAAAGATATGGAAAGAGTCCACATCGAGATGTTCAAAAAGTTCTCAGAATAAGCTATGATAGCTTGCCCTTCAATGAGAAAAACATTTTTCTCGACATTGCATGCTTCTTCAAAGGGCAAAGATCAGAATATGTAAAGAGAGTATTGGATGCATGTGACTTCAACTCAGGAGATGGAATTGATACATTAGTTAATAAATCTTTATTAACTGTTGACAGCCAAAACAAATGTTTGGAGATGCATGACCTGATACAAGACATGGGTAAAGAGATTGTCAAAGAGGAATCATGGACTGAAATTGGTGAACGCAGCAGATTGTGGTTTCACGAAGATGTTCTTCAAGTACTTGCTGATGATATGGTAAGTGATAGTTCCCAACTTTGTTTCTAGATTTTTATCATTTTCAAACATGTTAGCTTAAAGTTTTGACAACATATTTAATGTAACTTGTGATTATTTTAAAGGGAAGTGGGAAGATTCAAGGACTAATGCTTGATCCCCCTCACAGAGAAGAAATTAATTGTACTGAAACTGTATTTGAGAAGATGAAGAATGTTAGAATTCTCATTGTTCGTAATACGAGCTTTTCACATGAGCCTAGTTATCTCCCAAATAACTTAAGGCTACTTGATTGGAAGAATTACCCTTCACAATCCTTCCCTTCAGAATTTTATCCCAGGAAAATTGGGGCATTCAATTTAAGTAGAAGTCCTGTACTCGCACTGGAAGAACCATTTAAGGTACAGGTGGTTTTTGTTTAGATTACTCGATCTAACTGTAGATAAACATTTGTTCTTTCAATCATCTTCCTCGAAAACAATTGACATGATGTGGATGAATTGTTGTTAATTAATTGATTTACTTACGTTTTTGCAGAGATTTCAGCTTTTGACTTATATGAATATATCTTATTGTAATATGGTTACTGAATTTCCCGATGTGTCTGGGGCCAAAAATTTAAGAGAATTGAGACTCGATGGATGCGAGAAACTGGTTACTATTCATGAATCAGTTGGACTTCTCGCTAACCTTGTTTTTCTAAGTGCTTCAGAATGCATCCTACTCTCAAAGTTTGTGCCAACAATGTATTTGCCTTCTCTCGAATACCTTTCCTTAAACCTCTGCATAAAACTAGCATTCTTCCCAGAGATCAGTGGAACGATGAACAGCAAATTGAAGATTAATATGTTGGATACAGCTATTACCGAGCTTCCAGAATCAATTGAGAAACTTACTGGGCTTAACTATCTTGACATGACAGATTGCAAGGAACTTCAACATATACCAGGTAGCTTATTTATGTTGCCAAATTTTGTCACATTAAAAATTGGAGGATGTCGTCGGCTTCGAGAGTCATTTACAAGGTTCAAAGGAAGTCATTCAGTTCGCCCAAAACTTGAGACATTACATTTCGACAATGCTGATCTATCAGAGAAAGATGTTCGTACGATTATTTACCATTTTCCTAACTTGAAAGACTTAAATATATCGTGCAACCCAGTTGTGTATCTCCCAGCATGCATTAAAGAATCTACTAACTTGACAAGTCTTCACCTGAGGTATTGTGATGTGCTTCAAGAAATTCCAGAACTGCCGTCAAGAGTTCAGAAAGTAGATGCAAAATACTGCTATTCCTTAAGTTCGAAGTCATCAAACATCTTGTGGAGTCAGGTTAAGTAGCACTTTTTACTAATATATATTTACATAGCCAACAACGTATCTTGGTCTTTAGGAGATCTTTTTGTGCCTAGTTCCACAATTTCCTCTGCATATTATTTCATTCTAACAAAACAAAATATATAAGAATGGAAAACTCAAACCTATGTAGTTTACAGTGGAGTTTATTAAAGGACATATGTAAGTTTCTTTTCTGGTTCGTGGGATGTTTCACAGGTCCGTAAAGAAATGAAAAGATTAGAAGTGGGGATGCCAGAAAGTGACATTCCAGAATGGTTCGACCATGTTAATGAGGGAGGGTTTCCTGTTTTCACTGCCCGTAGAAAGTTCCCAGCTGTTGTTCTAGCTTTAGTGTTTGGTGTAGTGGATGCCAAAGCCGACAGAGAAATAATGGAAGGTCGCTGGAGAACTGTCGGAATGCACTTATTCATTGAAGGTGAACGCAGACGGTACCATAATTTCAGCGTGGCCGAGAATCATGTGTTGCTGTGTAACCTACGAGTTTTGTTCAGTTTGGAGGAATGGGAGGATGTAGGATTTGGGGTTGATGAGGATTGGAAGACCGTACAAGTTTTCTGTGAAACAAATTTGAGTCTATGTTCATGGGGAGTGTATGTCTACAAAACTGAGACCAACATGGATGACATCAACTTCATGACTCAACATCCAAGTTCCTCTTTGGTGTTGAGTCGTCACAAGATGATCAGTGATATGGATAAAATAGAAAGCAAGATAATAAGTTTGAATATACCACAAATGCATAGGGAGTTTCATATGTGGAGCACTGCAGCTCGAAAACTCCGCTCTTTTAAAGGTGAAAGTAGTCGAGTGTTGGAAAAAGCATCGAGAAGGGTCATGGCCTTGAGAGGGGAGGAAGGAAGATCAGGAATGAACATTGAAGACGAGAGGGACAAGGAGTTGGATGCGCAGTTGGATATGCTGGCAACTGCAGAACTTGATAAACATTTTCATTATCCTAACAATCACACTGCTGAACCCTTTACTTCACAATATTGCCGTATACTTTGA