Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12791	LG3	20403391	20407775	PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	positive regulation of cell division, gibberellin mediated signaling pathway, response to gibberellin, protein phosphorylation, protein phosphorylation, response to gibberellin, gibberellin mediated signaling pathway, gibberellin mediated signaling pathway, gibberellin mediated signaling pathway, protein phosphorylation
Cellular Component	is active in	plasma membrane
Cellular Component	located in	nucleus, nucleus, cytoplasm
Molecular Function	enables	transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity, transmembrane receptor protein tyrosine kinase activity

SNP	Position	Effect	Amino acid change
G/A	20403460	3_prime_UTR_variant
A/G	20403875	upstream_gene_variant
T/C	20403893	upstream_gene_variant
C/G	20404049	upstream_gene_variant
A/G	20404107	upstream_gene_variant
T/G	20404152	upstream_gene_variant
T/C	20404153	upstream_gene_variant
A/T	20404231	splice_region_variant&intron_variant
A/C	20404243	missense_variant	p.Leu573Arg
T/A	20404377	synonymous_variant	p.Pro528Pro
T/A	20404380	missense_variant	p.Lys527Asn
T/A	20404381	missense_variant	p.Lys527Ile
G/A	20404539	upstream_gene_variant
T/G	20404597	upstream_gene_variant
T/A	20404604	upstream_gene_variant
A/T	20404611	upstream_gene_variant
G/A	20404943	upstream_gene_variant
A/T	20404944	upstream_gene_variant
T/C	20405131	synonymous_variant	p.Ser405Ser
C/T	20405167	upstream_gene_variant
G/T	20405189	upstream_gene_variant
C/G	20405191	upstream_gene_variant
A/T	20405274	stop_gained	p.Leu389*
G/A	20405525	intron_variant
C/T	20405526	intron_variant
C/T	20405550	intron_variant
A/C	20406045	missense_variant	p.Val162Gly
G/A	20406124	intron_variant
G/T	20406153	intron_variant
T/A	20406167	intron_variant
G/A	20406170	intron_variant
A/T	20406192	intron_variant
G/A	20406200	intron_variant
A/G	20406366	downstream_gene_variant
C/T	20406553	splice_region_variant&intron_variant
A/G	20406591	downstream_gene_variant
A/T	20406625	downstream_gene_variant
T/C	20406732	downstream_gene_variant
A/T	20406807	splice_donor_variant&intron_variant
C/T	20406808	splice_donor_variant&intron_variant
A/G	20406894	synonymous_variant	p.His17His
C/T	20407309	5_prime_UTR_variant
A/T	20407410	5_prime_UTR_variant
T/A	20407422	5_prime_UTR_variant
A/C	20407553	splice_region_variant&intron_variant
G/T	20407696	5_prime_UTR_variant
G/A	20407706	5_prime_UTR_variant
G/A	20407728	5_prime_UTR_variant
C/T	20407773	5_prime_UTR_variant
A/T	20407774	5_prime_UTR_variant

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12791.2

MEVEKRFVLVGIRIDGHSRQLLDWALVKVAEPGDSVVAVHVVKNPDHVWKSNTLIDDYLEVYEGLCDAKKLDLTGQIFCGCSVRNILVREAKKHDALALVVGGRAGLAKYCAKRVPATTNVLAIQGSRIVYRSCTNEQQPGTLIKDPRPSLRTIGKNSSDRVNQSTFGDSTLEIEKPATKNSLDLKEEAFKGLAKCKTRSISMFAGDSAKQKLGWPLLRGANSGTSQTHHARDMSVVQWVMTLPDRSPSKSPCSSSSEDNPFERSISDIDDESSKFSSAPSVELPNGLEEMQRVNSIDCKWFSLELLQSCTRQFSSENLVGKGGSNCVYKGVLPDGKPVAVKVLQSSKEAWNEFALEMEITSSLRHKNIAPLLGICTEDNTLISVYDYLPQGTLEENLHGKSKLSWEVRFNVAVGIAEALDYLHREALKPVIHRDVKSSNILLSQGFEPQLSDFGLAVWGPTNSSFLTHDVVGTFGYLAPEYFMYGNVSDRIDVYAFGVVLLELISGREPISSAACKGQESLVVWAKPMIDSGDIKGLLDPDLEGKFDEVQLQRMVMAASLCIQRAARLRPKLNQILKILKGDEKVEYLLNSLGNNEDDSENGENIDDEVYPSSSAELHLSLALLGVDDDKASQTSTELSYSEHLKEQWSRSSSFN*

>Vu_12791.1

CDS Sequence:
>Vu_12791.2

ATGGAAGTTGAAAAAAGGTTTGTTTTGGTTGGTATTAGAATTGATGGCCATAGTAGACAGCTTCTCGACTGGGCACTTGTCAAGGTTGCTGAACCAGGGGATTCTGTTGTAGCAGTGCATGTTGTTAAAAATCCAGATCACGTTTGGAAAAGCAATACTCTGATAGATGACTATTTAGAAGTTTATGAAGGGCTATGTGATGCTAAGAAGTTAGATCTCACTGGTCAAATCTTCTGTGGATGCTCCGTCCGAAACATTCTTGTTAGAGAAGCAAAAAAACATGATGCTCTGGCTCTAGTGGTAGGGGGTCGAGCTGGCTTAGCTAAATATTGCGCCAAACGAGTACCAGCCACCACCAATGTTCTAGCCATCCAAGGCTCAAGGATTGTATATAGGAGTTGCACCAACGAACAACAACCAGGTACTCTTATAAAGGACCCAAGGCCAAGCTTAAGAACCATAGGAAAAAACTCAAGTGACAGAGTAAACCAGTCTACATTTGGTGACTCCACCCTGGAGATTGAGAAACCAGCAACCAAAAATTCCTTAGATTTGAAGGAAGAAGCATTTAAAGGATTAGCAAAATGTAAGACAAGGTCAATATCCATGTTTGCAGGTGATTCAGCTAAGCAAAAGCTTGGGTGGCCTCTACTCCGAGGAGCCAATTCGGGAACCTCACAAACCCATCATGCAAGGGACATGTCAGTAGTACAATGGGTAATGACGTTACCGGATCGTTCACCATCTAAAAGTCCCTGCTCTTCTTCTTCTGAGGATAATCCATTTGAAAGGAGCATCAGCGATATTGATGATGAGAGCTCCAAATTTTCTTCAGCTCCATCTGTTGAGCTACCAAATGGCCTAGAGGAGATGCAACGCGTAAATTCAATCGACTGCAAGTGGTTCAGCCTTGAACTTCTGCAGTCTTGCACTAGACAATTTTCTTCAGAAAACTTGGTTGGGAAAGGAGGGAGCAATTGTGTGTACAAGGGAGTCCTCCCTGATGGAAAGCCAGTGGCAGTTAAAGTATTGCAGTCATCCAAAGAAGCCTGGAACGAGTTTGCCCTTGAGATGGAAATAACATCCTCATTGAGGCACAAAAACATTGCCCCTCTACTTGGGATTTGTACAGAGGACAATACTTTAATCTCCGTTTATGATTATTTGCCCCAGGGCACCTTAGAGGAAAATCTGCATGGAAAGAGCAAATTGTCATGGGAGGTGAGATTTAATGTGGCAGTTGGGATCGCTGAAGCCCTGGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCTAACATTCTTCTTTCCCAAGGGTTTGAACCTCAGTTATCTGATTTCGGACTTGCAGTATGGGGACCTACAAATTCATCCTTTTTGACACATGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAATGTCAGTGACAGGATAGATGTTTATGCATTTGGTGTAGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCAGCAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGCAAAACCAATGATAGATAGTGGGGATATTAAAGGCTTATTGGACCCAGATTTAGAAGGGAAATTTGATGAGGTCCAATTGCAAAGAATGGTTATGGCAGCATCTTTATGCATCCAACGGGCTGCTCGACTTCGTCCTAAACTGAACCAGATACTGAAGATCCTAAAAGGAGATGAGAAAGTTGAATATTTGCTGAACTCCCTTGGGAACAATGAGGATGATTCAGAAAATGGAGAAAACATCGATGATGAAGTGTATCCAAGTTCAAGTGCTGAGTTACACCTGAGTCTTGCTTTACTTGGTGTGGACGATGACAAAGCATCACAAACTAGCACTGAGCTCAGCTATAGTGAGCACTTGAAAGAACAATGGAGCAGGTCATCAAGTTTCAATTAG

>Vu_12791.1

Promoter Sequence:
>Vu_12791::LG3:20407775-20409775(-)

CCTTTGATAAATTATTCTTTAATTTATTGAGTAGTTGCAGCTTTTATAATTTTTTTTCACATAAAATTTAGATATTTTTTTATTACAATTGTATACTAAAAATAATTAAAACTAATAAAACTATATATATGCACTAAAATTCAGCAATGAAAACTATAGACATGAAAGCCACTATAATACACCAAACTAAAAGGCGAAAAATACAAGTTTTACTGATTCTACATGTTTAACAAAAGAAAGTCATCCCATGAATTCATAAATATAATAGTTTTTGTGTTCTTGTAAAACATTCGCAAACAGTTCAGACCTCTAACTTTTACCAGAAATTCTTAATCCCTTTCCATTAAAAAACTATTAAAATGTTTTGACTTTCTTATTCTCTTCAATAAATTTGTTTTCTTTTCGATTTAATTGGATTTATTGAAGAGATCAGATAATTAAAAACATAAAAAAATAGAATTTTTTTAATTTCAGTTAAAAACTGAAGCGAAAAAATGGAAGATTTTGCTTTAATGGTAAAAAAATCAAAACAGTTAACTGAAAAAAAAATGAATTTTTGAATCGGATGTTATCATATCCTGTTATGTTTTGATTCATTGAAAACCAATATGAAAGGTTATTTTATTCTAGTGATTAGTGTTTCATACCACAGATGAATATATATAATCTTATTTATTAATATGTTTAATGGATTAAACTGTGCAATGCTTTTTCTTTTTTTGGTTGTTATGAAGGAGAAATGACAACCTAAATGTGACAGAGAAATGGACAGAAAAATGAAAAGAGAAAAGGTGAAAGTCCAGTTAGAACAAACCAAAGCAGAGCATACCAATTTCTGTTGTACCTAATATATCAGATAAGGCAGAAGATTTGTCAGCTCATTTCTCACCAAAGAACAACCTCGCCTGACAACATTATATGTGACATGTATTGAGGTTGAAAGTTGAAAGGTTATGTTTTAGACTTTGAATTTGTGGGGCCTACTCAAGAATCAGAATTTTAACGTGTTCAACTTTTATTTCATTGTCAAGTTCAATTTCTTCTGGCTAAGCAACTGTAATAGATTAATACACACTACGTGACAACGTTCGTGTTGCTGAGTTAGGGCTGCTATATTCTGCTAAGGGTGGTGAAAACAGAACACTGTACAAAATTTCAATGGAAAACGTGCGCTCCCAGAATTCTAGAGTCTAAAATAAATTCATCATCTTTTTATAAGTTAAAAGTCTTATAGAATAAAAATAAATAAGATGATTAATATATAAGTTGATGGTTTACGTACTTATTTTTTTAAGATTTTGAATTGAAAATTGTGTTGCAGTATGATTATAATTGTTATAAGTTTGTGATAATTAACATAAAATAATTTCTTATTTACTGATATTACAAATAAAAGATACTGAAGCGATTATATATTACTATAATAAGGGTTTATAGTTTTTTTTTATTGAAGATATTTTCTTCGCAAATTAGGGTTTCGTATGGAGCAGTTAACCAATCGATTTCTTAAGATTCTAAAGAAAGCAAAGGAGACAAAATGGATTTTGTAGGCACAACGATACTGCGGGCACGTAATATCATTTGGTTGTGTTTATCCCCTTTGGACGATATTAATTATTACATAATTATGAATCATCTTTGTCATAGCAATTATGTCATGGGAAGAAATTATGATTATTAGAAAATCAGATGGAATGTTCATAGTTAATTTCTGTAAAATTCAATAGGTAGCACTTTTGTCTCATTTTTTTTTCTGAAATTTCAAAACAATTAGATGAAATTTATGATTTAATTTCTTCCTTGGATTCCATTTCACTTAGCATATATGTCATGTATAACAGAAAATATAAAAAAAAAACCCGTTATGAATAAATGAAAAAAGAATTCAATAAATGTAATAGTTATGATTTCAAATTATATATGCTATGCAATGACATGATGTTATGGAATTGAATGAAATTATATTGATTTAAATGTTAATAAAATGGTTATTAACATTT

Gene Sequence:

>Vu_12791(-)

ATGATTTTAAATCTTGAAAAACATATAATTGTTGTCGTGTAATTACACTTTCTATTGTAGTTCATCGAGCTAACATCTACGTACATTTGTACCAAATGTGATGAGGTGGTGTTCGGCGCAATAATCGTGGAACAGTGTTTCGTTTTCATGGAGCCATGTACCAGAACCGGATATTAAGGGTTTCCCGCGAAAACTCTCTGTTAGGACTAAAATTTTTCAGGTTCATATATCATCATTTCGTAAAACACAACCTTCTACCCTTACTTTTCGCATCATTGTTTTTTCCTTCCTCGCGCCTTAGAGTTTTTTACTTCTTCTTTCCAATTTTATCAACCCCTTTCATTCAAGAACACACTTTTTTATTTTTCAAATCTCAAATTTTCTGCATGTGTGTTCTTTCATTCCGTTCTTCCACAATGCCTAGATGCAGATTCACTCGTCTTTACGATTCTAGTTTAAGTTGGTTGTTTAAAATAAACATGGCTGCTTCCAACAATACTTAGGTACACATTTATTCGCCTAATCTTGTTTTATTCGACATATGTTTAATGCCACGATTTGTTTTACGAGGATATTATATTAATTATGAGTCGTGTGACTTTTATGTTATTCTTCTTCTCCCGTTTTAGATTTAAATATTTTTCTAATAGGACGCCGTCTTTGTCATGGGTGCTGCTATTTAATATTCAACTATGGTATATCCTGGTGTGCCGAGTATTGGGCATGATGTTCGAGTCCCAACCATGAAAGTAACAGATGCTCTGTTTTGCAGAGGATGAGATGGTTCGCTCAACAAGGAAGGCGAGGTGTTTGATGTAAAGGCAAAACGCAATGGAAGTTGAAAAAAGGTTTGTTTTGGTTGGTATTAGAATTGATGGCCATAGTAGACAGCTTCTCGACTGGGCACTTGTCAAGGTTGCTGAACCAGGGGATTCTGTTGTAGCAGTGCATGTTGTTAAAAATCCAGGTAAAAGAATTCACAAAGCTTCCACGCATATTATAGCATATGTATTTTTTTCACGCGTGTACCTGTTGAAAGAGTTAATTTAATGCAGATCACGTTTGGAAAAGCAATACTCTGATAGATGACTATTTAGAAGTTTATGAAGGGCTATGTGATGCTAAGAAGGTAGATAGACTTTTCTGTACTTTTTAACTTTTTTTTTCCCTTTCGTTCTCGTCGTTGGTAAATGTCACAGATTTTTATTGACGGGTATGGTTGGATTTCAGTTAGATCTCACTGGTCAAATCTTCTGTGGATGCTCCGTCCGAAACATTCTTGTTAGAGAAGCAAAAAAACATGATGCTCTGGCTCTAGTGGTAGGGTATGTGGAGCTTAGAGAACAAAATGAATTCTGTAATATTTCTTGTTGCGTTTAGTTTATCTGACTTCCTTTGCCTCCTCTGATTGGTTAAAAGACTAAAGCAGATTTCACTTGCAGGGGTCGAGCTGGCTTAGCTAAATATTGCGCCAAACGAGTACCAGCCACCACCAATGTTCTAGCCATCCAAGGCTCAAGGATTGTATATAGGAGTTGCACCAACGAACAACAACCAGGTTTGTCTGGTGGAGACCATGGTTTTGTCTAGTGGGAAAAGTATTAACATAAGTGAGTCAGTGACAAAAGCGAAAAAAGAATGAAGATTGTTTCTTCCTCTTGTGGCAGGTACTCTTATAAAGGACCCAAGGCCAAGCTTAAGAACCATAGGAAAAAACTCAAGTGACAGAGTAAACCAGTCTACATTTGGTGACTCCACCCTGGAGATTGAGAAACCAGCAACCAAAAATTCCTTAGATTTGAAGGAAGAAGCATTTAAAGGATTAGCAAAATGTAAGACAAGGTCAATATCCATGTTTGCAGGTGATTCAGCTAAGCAAAAGCTTGGGTGGCCTCTACTCCGAGGAGCCAATTCGGGAACCTCACAAACCCATCATGCAAGGGACATGTCAGTAGTACAATGGGTAATGACGTTACCGGATCGTTCACCATCTAAAAGTCCCTGCTCTTCTTCTTCTGAGGATAATCCATTTGAAAGGAGCATCAGCGATATTGATGATGAGAGCTCCAAATTTTCTTCAGCTCCATCTGTTGAGCTACCAAATGGCCTAGAGGAGATGCAACGCGTAAATTCAATCGACTGCAAGTGGTTCAGCCTTGAACTTCTGCAGTCTTGCACTAGACAATTTTCTTCAGGTTGGACCACTATGGCTTGCAATACTAACTGTTACGATTTTTTTTAGTTTGTAAGCAAATATAAGTATATAACTCTGTATTTCATTGCAGAAAACTTGGTTGGGAAAGGAGGGAGCAATTGTGTGTACAAGGGAGTCCTCCCTGATGGAAAGCCAGTGGCAGTTAAAGTATTGCAGTCATCCAAAGAAGCCTGGAACGAGTTTGCCCTTGAGATGGAAATAACATCCTCATTGAGGCACAAAAACATTGCCCCTCTACTTGGGATTTGTACAGAGGACAATACTTTAATCTCCGTTTATGATTATTTGCCCCAGGGCACCTTAGAGGAAAATCTGCATGGTAAAGTTTCTTTCTATTTTTTCTTTTACTTTTCATCCATAATTTCAATTGTCGAAAGATGTAATTGCTGATATGAACTTGGAAATGGATATAGGAAAGAGCAAATTGTCATGGGAGGTGAGATTTAATGTGGCAGTTGGGATCGCTGAAGCCCTGGATTACCTACACAGGGAAGCTTTGAAGCCTGTTATACACAGAGATGTCAAGTCTTCTAACATTCTTCTTTCCCAAGGGTTTGAACCTCAGGTAATCAAAAAGTTTTGAGATTCTTACTATTGAAAAGAATATCTAGTACTATCAGTATTCAAATGAAGCAACATTTGTGAGAATTTCATTGTAACTCACTATGGTCCATGATGCAGTTATCTGATTTCGGACTTGCAGTATGGGGACCTACAAATTCATCCTTTTTGACACATGATGTAGTAGGAACATTTGGTTATCTTGCTCCTGAATACTTCATGTATGGAAATGTCAGTGACAGGATAGATGTTTATGCATTTGGTGTAGTTCTACTTGAACTAATATCAGGAAGGGAACCAATCAGCTCAGCAGCTTGCAAAGGACAGGAGAGCTTGGTCGTGTGGGTAAGATCTAACCCCATTTACAATAATGAATTTTGACTTCTCTTAATCATATAAAAAAAATGTAAGAATGGCATTATTCTTGCTATACCTTGTTACAGAGATGGAAAGAGAAGCACAAAATAAGATAAATGATTTGACTCAAAAAATGAATTTGTTGAAAAGTATATCAGACAGAACTTGTGAAAACAGCGTCAGTCAAAGTATAAATCTTTATTTGATACATCATAGTTTATACACCTAGGAATCCTAAACAATGATTTCATTTTCAGGCAAAACCAATGATAGATAGTGGGGATATTAAAGGCTTATTGGACCCAGATTTAGAAGGGAAATTTGATGAGGTCCAATTGCAAAGAATGGTTATGGCAGCATCTTTATGCATCCAACGGGCTGCTCGACTTCGTCCTAAACTGAACCAGGTAATACCAAATTACACATTAAAGTTGTCATGTTCTTAATGATAATCACGTTTAATTAAGAAAATTAGAGGTTTGAAAAAAAAAACACCTTTTGAGGAAAATCAAGCCGAATCACTTTATAAAAATCATTTTTCTTTAATTATCTGAACTGTTTTTACAGAGTTCTTCATTCTGATTTTCTAAATTGAACTGTGCATTAGTGTAACAGCGATAACTAAACTAAATGTGTTTAAAAGAAAAATACATTCTTTAAAAGACTGAACCAATTCCCTTTATAAAAATGGCTTGATTCCATTTTTCATTGAGGTTATGTAAAGTTTATTTATGAGAGTCATAGAAAAAATATATACTTTTAGATCTTAAACTCTGTCATTTACAGATACTGAAGATCCTAAAAGGAGATGAGAAAGTTGAATATTTGCTGAACTCCCTTGGGAACAATGAGGATGATTCAGAAAATGGAGAAAACATCGATGATGAAGTGTATCCAAGTTCAAGTGCTGAGTTACACCTGAGTCTTGCTTTACTTGGTGTGGACGATGACAAAGCATCACAAACTAGCACTGAGCTCAGCTATAGTGAGCACTTGAAAGAACAATGGAGCAGGTCATCAAGTTTCAATTAGTTTTGTTGAATCCTAAGTTCCTAACCCTTGTATTTGTCCTTAGTTTGTGCATGTACAGTTACGTTAAAAAAACAAAGAAAGAAGACAGAGATTCAGCACCCTTGATGAGGTGGTTTGTAGATGTAGAATGGCAATTTTGTTTTTAATTTACCCTGAGAATAATGTACTAAATTTTGGTTTTATGAATGCATCTTAGGCAATGGTTGAATGCATCTTACTC