People Important Links Contact Us
Chickpea portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Menu

Genetic Resources

Genomic Resources

Agronomic Practice

Publications

Nutrition

Social Resources
  • Maps
  • Gene Families
  • Gene Search
  • MARKERs  
    • SSRs
    • SNPs
  • JBrowse
  • Download

Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12723 LG3 19691089 19693334 PREDICTED: transcription factor bHLH63-like
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/G 19691480 intron_variant
G/A 19691497 intron_variant
T/G 19691554 missense_variant p.Ser124Ala
G/A 19691571 synonymous_variant p.Lys129Lys
A/T 19692101 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12723.1
MLHCLNGSGNLGASCSDMTVLERQREATTKWQHHHHDNHPPYYSATEFHVNLVFSSSSSNLPQSQGLVMARERDDSALSQVLAHSLKPDPGLCPELDTGFGSSSGFLPKENDKKRKALNYKVASESDNKDKRVKVSGEEGESRVTNQTSNRNGKSNANKNNRETSADSSKNNSKGSEVRREKISERMKYLQDLVPGCNKIAGKAGMLDEIINYVQSLQRQVEAFPSCGQGLPNIGMVSDMSMCNNPSYVQLNSTQQLVSCCGGLINNVGMSPSNMGLRRNISTTHVPLPEAFIDSSCFTQILPSSNWDGDFQSLYNVAFDQGRAGAASFPSQPFTGVVETCNPKMEM*


CDS Sequence:
>Vu_12723.1
ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCACGAAGTGGCAACACCACCATCACGACAATCACCCACCTTACTATTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAGCAATCTTCCTCAGAGCCAGGGCTTGGTCATGGCGCGTGAACGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATTGGACACCGGATTCGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACGATAAGAAGAGGAAGGCGCTGAACTACAAGGTTGCTTCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTAAGTGGTGAGGAAGGAGAATCCCGAGTGACAAACCAAACCAGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACATCTGCGGATTCTTCGAAGAATAATTCGAAAGGCTCCGAGGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGGAAAGCTGGAATGCTTGATGAAATCATTAATTATGTTCAGTCTCTTCAACGACAAGTCGAGGCGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGTATCAGATATGAGTATGTGTAACAATCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATGAGCCCTTCTAATATGGGACTTCGAAGGAACATCAGTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTCAAATTCTACCCTCTTCCAATTGGGATGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGAGAGCGGGAGCAGCATCTTTTCCTTCTCAGCCATTTACAGGTGTAGTCGAAACTTGCAATCCGAAGATGGAGATGTAA


Promoter Sequence:
>Vu_12723::LG3:19689089-19691089(+)
AAGGATTTATTTTTATTTTGACTCGTAATAATTAAAACTTTGGAATTTATTTGTTTTATGTGAATGAAAATTTAGATTAAGGAAACTTGTGTTGATAATTCAAATCTTATTTTTGATAAAAAAATGACAAAGATACAATATATAAAGGTAAAAATCATTAATTGTTGTCTTAAGATTTTGAACAGAGGATGATGTCAATTACTTATGTGATTGAACTCATATCTTATTAGTGTTGTATCTTCAGTGAACATCCTTCTTTATAAATCTAATTACTTATTCAAACTTTCAGATCACAATAACTCGCATACTAAATAATTTTAAATTATTGAAAACATGGATTAAGAAGTGAATTTGGCGGAATGCAAGGAAGTGTGTGGTGGTAGAACTTTTGTTGCATGAAAAACAAGTTAAGGTAGTGATGTTTTTCATCATCGACACATTAGTTGGAGAAAGAAAACTCTAATGAGGTGTGATGAAACCAAAACATTTGAAGCTATAGAGAGTGTAATAAGGTTGGGTTGATGATATAAATGCAGTGTGTATGGGGAGAGTTAGTGAAAGAGAATAGAGAATATAAAAAAGATGGAAAGCACTTGAGGAACTAAAAAAAGAAAGAGTGAGTATAGAAAAACAATAGTATTGTGTTGATGTAAACCACAAAAAAAGGTGATATGATAGAGGAAATGAGATTGAGATGGAGGACCCATTTTGAAGTGTATGTATGCAAATGGTACATAGGTAGAGAGATAGAGATGAAAGAGACATGAACCAAAAATAAAGTTAGAGAGATTTTCAAAAGAGGACCCATTTCGTCATAATGGAAGTTGCCTTCATCCTCTCTGGACTTGTTCCTCACCTTTACCTTCCGCTATTGCTTCAAGCTTCAAATCGCAGCATAAATTTGCAAGCAAAGCATGATTTAGACAATGCTGTTAATGTCAACTGCCTGCTTCGAAATGACACTCTTGCTAAACATTCTCCTCACATTTTACCAACAACTCGCCTATCCTTAACATTATTTTCACTGCTTAATTTGTCCCATTACAATAACTAAACATCCTCAAAACCCACTAAAACAAAAAAATCTCTCATGTTTAACAACTAAGCATGTGCTCAATTATGCAGACACCCATCAATCCCTTTCCTTAAAGTGGAACCTCAAATATTATTAGATTATATGGTTTTGTTTATCAAACATAAGTAACTGGTTCGAATAGACCTCTATGACCTATCCATAATTCAACATGCTAGAACTTTCTCTCATCTATTGCTTTTTTTTTAGGTACATTCTTATCCACCGGAATAAACTAAAAACGATAGTTTATTTACTGTTTCTATATCCAATTTAAATAACATGAAGACACATAATTCTGTGTAATTTATGCTTGAATTCAATTTTTTATTTGCTTGTATGTTTGAAGCGAGATGCAAATCATACATTCTTTGACCATACAACCACCAGAAGTACTAATAGAAGAGATTAGAAAGAAACCATCATTATGAAAGTACTGTTATTGTACAGTTTAATTAATTAGAAAGTTGATTAGTTGAGAGAAGAAAGGGAAAAAAGAAAAGAAAAAACACTGCCGTTTCGAAGCGTTGGACACGCCCACGTGGCGGTCATATCAGTGGACCCCAAGGCCACAGCCTCGGTTATGGTTACATCAATAGACCTTATGTCCCACTCTCTCTATCTTAATTATTCCGGTCATATTTTTATTTCCTTGTATTAGTTATTAGTATTATTGAAATAAAATAAATAAATAGAGAAATTAATTTCCCTCCGTTTATATATACCCACCCTATCTCTCTGCACTTCCTTAACACTATTCCAGTGTTTCTCCCACACCGTGTACTCAACTTCCCCGTGACCCTACGTCGTTTTTTCTTTTTGTTTTCCACACACACCGCGTGGCGCGTACTTTCGGATCCACTCCTAGCCCAACAACGTAGCGGTGCCTAATCCTTAGGAATAACGAATAACCTTAACAACCTCAACA


Gene Sequence:
>Vu_12723(+)
ATGTTGCATTGTCTGAACGGTTCGGGGAATCTAGGAGCCAGTTGTTCGGACATGACAGTGTTGGAAAGACAAAGGGAAGCAACCACGAAGTGGCAACACCACCATCACGACAATCACCCACCTTACTATTCCGCAACGGAGTTTCACGTTAACCTCGTTTTCTCTTCTTCTTCCAGCAATCTTCCTCAGAGCCAGGGCTTGGTCATGGCGCGTGAACGTGATGATTCCGCGCTCTCTCAGGTGTTGGCTCATTCTCTCAAACCCGACCCGGGTCTCTGCCCCGAATTGGACACCGGATTCGGATCCTCTTCCGGTTTTTTACCCAAGGAAAACGATAAGAAGAGGAAGGCGCTGAACTACAAGGTACTAGGGAATGCTGATAGAGGATTATATATGATTCGGTGTGGTGTGGACTATGGTAAGGCAACCGTGACGTTTTTTTTTTTCGATTTTGTTTAGGTTGCTTCGGAGAGTGATAACAAGGACAAGAGAGTCAAAGTAAGTGGTGAGGAAGGAGAATCCCGAGTGACAAACCAAACCAGCAACAGAAACGGCAAATCCAACGCAAATAAGAACAACAGAGAAACATCTGCGGATTCTTCGAAGAATAATTCGAAAGGCTCCGAGGTTCAGAACCAGAAGCGGGAGTACATTCATGTCCGAGCGCGTCGTGGTCAAGCCACTGATAGTCATAGCTTAGCTGAAAGAGTGAGTGAAAAAAAGAAGAAGCAAAACCAACTACCATATTAAACGACGCGTTTTGATTCTATTTGTGCTTGTTTAATGCGAGCGTTTTGTTTTGTTTGATGCAGGTCAGAAGGGAGAAAATTAGTGAGAGAATGAAGTATTTGCAAGATTTGGTTCCGGGTTGCAACAAAATTGCAGGGAAAGCTGGAATGCTTGATGAAATCATTAATTATGTTCAGTCTCTTCAACGACAAGTCGAGGTTAGAGTTTGTCGGTCCCTCTGAAATTAATTAGGCTATTCACTGTTCATGTTGGAATATGTTGAATTTTTTATGCTTCCAAGTCTAAGGACACTTGAATTAAAGTCCGCGTGACTTATTTTATAATGTTTATCACTGCATGCAGTTCCTATCAATGAAATTAGCGGCTGTAAATCCAAGCATTGACGAACTGTTTGCCAGAGAGGTATGCACATGACTCAACTTTTTTCTCCTTTTAGCTGGATTCAATATGGTAACAGCTATTCTTGACATATGTTTTGATATTCGGAAAATGACAAATAATCACAAATACAGCATATATACTAGGAGACTTTACTTGAAAACCTTGGATTATGTCCAGAATATTGGAATTTAATTAGAACTTGCATAAGAAATTATGTTTATGACATAACTCTCTATGTTTGATTCCCACAGGCGTTTCCTTCATGTGGTCAAGGTTTACCCAACATTGGGATGGTATCAGATATGAGTATGTGTAACAATCCCTCGTATGTTCAGTTGAATTCGACACAGCAACTTGTATCATGTTGTGGTGGATTAATAAATAACGTGGGGATGAGCCCTTCTAATATGGGACTTCGAAGGAACATCAGTACTACACATGTACCTTTGCCCGAAGCGTTTATTGACTCGTCCTGTTTCACTGTAGGTTTCCCTTATGTAGTGTTGTTCTTGTTCTGTAATGATTACTCTTGTAGTGTCTAATAACTACGTGCACTGCAGCAAATTCTACCCTCTTCCAATTGGGATGGTGATTTTCAAAGCCTTTACAACGTTGCTTTTGATCAAGGGAGAGCGGGAGCAGCATCTTTTCCTTCTCAGCCATTTACAGGTAGCTACAAATTTATGACTTGTCAAATCACTGTTTTTTTTCTAAGCCTGATATCCTTAAAGTAGAAAGTAGAAGCACAGCAGAGTGGATTTTAATGGGTGATCGAGACACGAGAGTCCCACAGACATTGATAAGTCCTTTTTTTTTATCAAAATGAAGAAATTTTTTAAAAGGGTATTTTAATCATTCAGCCATCAAGCCAGTTGTCTCTTTTATTTGTTTCTTACATCACTTTCCCACAACATTCACACCTACAGAGTGGTGGCAAAGTTCTTTGCAGCCTGCTCAATAACATTTCATAGATCAATGCTAATTGCTATATATAACAAGTTGTTTTGATACTTTTCGAGATTGTTCTTAGTTGTTTGGACGATGAATTGTTTTAAAGATGGTTTTATGTATCTGCAGGTGTAGTCGAAACTTGCAATCCGAAGATGGAGATGTAA

NIPGR © 2020

This project is funded by the Department of Biotechnology
Ministry of Science and Technology
Government of India

Visits: 1322691