Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12663 LG3 19218725 19222212 B3 domain-containing transcription factor VRN1
Map

Annotations  
category   relationship type   keyword
SNP Position Effect Amino acid change
A/C 19218771 missense_variant p.Gln16Pro
G/T 19218784 missense_variant p.Arg20Ser
G/T 19218785 stop_gained p.Glu21*
G/A 19218960 upstream_gene_variant
G/C 19218998 missense_variant p.Val46Leu
A/G 19219009 synonymous_variant p.Gly49Gly
T/C 19219147 synonymous_variant p.Asn95Asn
A/G 19219192 synonymous_variant p.Gly110Gly
G/A 19219226 missense_variant p.Gly122Arg
C/T 19219238 synonymous_variant p.Leu126Leu
T/C 19219241 missense_variant p.Cys127Arg
G/C 19219276 missense_variant p.Met138Ile
C/T 19219485 upstream_gene_variant
A/G 19219578 missense_variant p.Lys186Glu
C/T 19219776 upstream_gene_variant
C/A 19219829 upstream_gene_variant
A/T 19219904 upstream_gene_variant
A/T 19219907 upstream_gene_variant
G/C 19220040 upstream_gene_variant
A/C 19220313 upstream_gene_variant
G/T 19220353 upstream_gene_variant
G/A 19220392 upstream_gene_variant
G/T 19220455 upstream_gene_variant
C/A 19220496 upstream_gene_variant
A/G 19220529 upstream_gene_variant
A/C 19220531 upstream_gene_variant
G/T 19220663 upstream_gene_variant
T/G 19220844 upstream_gene_variant
T/A 19220851 upstream_gene_variant
T/A 19221080 missense_variant p.Val223Glu
G/A 19221131 missense_variant p.Ser240Asn
A/T 19221155 missense_variant p.Gln248Leu
T/A 19221198 missense_variant p.Asn262Lys
T/A 19221207 synonymous_variant p.Pro265Pro
G/A 19221220 missense_variant p.Asp270Asn
G/A 19221224 missense_variant p.Ser271Asn
T/C 19221225 synonymous_variant p.Ser271Ser
T/G 19221496 upstream_gene_variant
T/A 19221640 missense_variant p.Ser358Thr
C/T 19221789 synonymous_variant p.Phe379Phe
A/G 19221790 missense_variant p.Arg380Gly
C/T 19221807 synonymous_variant p.Gly385Gly
T/C 19221815 missense_variant p.Leu388Pro
A/G 19221839 missense_variant p.Glu396Gly
T/A 19221946 upstream_gene_variant
G/A 19221963 splice_acceptor_variant&intron_variant
G/A 19221967 missense_variant&splice_region_variant p.Val412Ile
C/G 19221974 missense_variant p.Thr414Ser
A/G 19222001 missense_variant p.Glu423Gly
T/G 19222179 synonymous_variant p.Val482Val
A/G 19222185 missense_variant p.Ile484Met

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12663.1
MTMRDFSFYQKALIVQGNGREMWQMDYYRGNPVFFVIINNSKLQKVPEGFLKHLNEDFQNAVLIGPSGDNWQVTILKKGNNIYLYNGWPQFLTDNSVMLDDFLLFTYHGGNCFHVQIFGKNGLERLCFKQTRQDQVLMPSLVRTKKNTHRRTSSSPFLHQAKSYKKGLSFSSKFSFSKLKSSVKIESSEACYLADSFTSRNPHWKHLMTKCNVEDHCTLKVPKVFLKKLNEDLSSNAVLSSSSSGDKWQVSVLKKGNEVYMQNGWPKFVTDSSIVLHDVLLFTYHGENCFHVQIFDKNGVERLCLKETTQEKKDMPCRNKGFIFTGSETMKTGQKQTATPSLARTKKKKERHFSPGKSHQEDLSLPKDFPAPQHSVEIESSEALKLAESFTSSKPYWKHLMTKCHVEGRCILPVATKFARKYIPEEVKQIHIGNSEGTLWKVHVSWSKGYAHFSTGWANLVRDNKLMRGDTCIFELEENLHLRVHIFRTRCAPS*


CDS Sequence:
>Vu_12663.1
ATGACAATGAGAGACTTTTCATTTTATCAAAAAGCTTTAATCGTACAAGGAAATGGCAGGGAGATGTGGCAGATGGACTATTATCGGGGCAATCCAGTCTTCTTTGTTATCATCAACAACTCCAAATTACAGAAAGTGCCAGAGGGATTTCTGAAGCATTTGAATGAAGACTTTCAAAATGCAGTTCTTATTGGTCCTTCTGGTGATAATTGGCAAGTGACTATTTTGAAGAAAGGAAATAACATTTATCTGTACAATGGTTGGCCACAGTTTCTGACCGACAATTCAGTGATGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGAAACTGCTTCCATGTTCAAATTTTTGGTAAGAATGGATTGGAGAGGCTATGTTTCAAGCAAACAAGACAAGATCAAGTTCTGATGCCAAGTTTGGTGAGGACAAAGAAGAACACACACAGAAGAACTTCTTCCAGTCCATTCCTCCACCAAGCCAAGTCTTATAAAAAAGGTCTGTCTTTCAGCAGCAAATTCTCATTTTCAAAGCTCAAGAGTTCAGTTAAAATTGAAAGTTCAGAAGCATGCTACTTGGCAGATTCTTTTACCTCTCGCAACCCTCACTGGAAGCATCTCATGACTAAATGCAATGTAGAAGATCACTGCACACTGAAAGTTCCAAAGGTGTTTTTGAAGAAATTGAATGAAGACTTGTCGAGTAATGCAGTTCTCAGTAGCTCTTCTTCTGGTGACAAGTGGCAAGTAAGTGTTCTAAAGAAAGGAAACGAAGTGTATATGCAAAATGGTTGGCCTAAGTTTGTGACAGATAGTTCAATTGTGCTTCATGATGTACTGCTTTTTACATATCATGGAGAGAACTGTTTCCATGTTCAAATTTTTGATAAGAATGGAGTGGAGAGGTTATGCCTCAAAGAAACAACACAAGAAAAAAAAGATATGCCTTGCAGAAACAAAGGCTTTATTTTTACTGGTAGTGAGACAATGAAAACAGGGCAAAAACAAACTGCCACCCCAAGTTTGGCAAGGACAAAGAAGAAAAAAGAAAGACATTTTTCTCCTGGAAAGTCTCATCAAGAAGACTTGTCTCTTCCTAAGGACTTCCCTGCTCCTCAGCATTCAGTTGAAATTGAAAGTTCAGAAGCATTGAAATTGGCCGAGTCCTTTACCTCTAGCAAACCTTACTGGAAGCACCTCATGACAAAATGTCATGTGGAAGGTCGTTGCATATTGCCTGTTGCTACTAAGTTTGCCAGAAAGTATATTCCTGAAGAAGTGAAACAGATCCATATTGGAAATTCCGAAGGAACACTTTGGAAAGTTCATGTGAGTTGGTCTAAAGGTTATGCTCACTTCAGTACAGGATGGGCAAATTTGGTTCGTGATAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAAAACCTTCATTTGAGGGTTCACATATTCAGAACCAGATGTGCACCAAGTTAA


Promoter Sequence:
>Vu_12663::LG3:19216725-19218725(+)
AAGGTGAAAGCTGTGGGCCATTATCCGGGGAGAAAACTAGCCTATCCGAAAATGCAATACCAAATGTAAAACCATCTCCTTTCTGAACTTTAGCATCGAGGCATGGACTATAGACATCGTTTGTATCAGCTGCATCAACAACAAACATAGCCATCACAGCCATGATCACTACCCGTTTCACCAAATCTTCCCTCCTTATCTTGGACATGGCAAAAGCTTCACCCATCCCCATCTTCAAAAGCATGATCTTTTTCTGAGAAAAAACGAAAGGTTTATTTTTCCAGGTCAATGCATGATGACAGAAAATTAAAGAACAAATTTTGTGGTGATAGAAACAAAGTGGTGTCAACTTTTGCATCTTAATTTATAGAAACAAAAAGAACTTTAACAAGATTTGTGATTCGAGGATTTGTCTGTGGGACAGTGATGGAGATTATGGGAAAATGTATTTAAATAAAAAGACAAAGATAATTACAACAATTATTTACAAAGCAATAAACTACTCTGGATACCTCGAAATTGAAGGTTTTGAATTGAAGAATGTTAAAGATGAGGGTTGGTGTGTCTGTGTTTCCAAGACATGGCAAAAGGCTAACTAATCCAGGGAGAAATGGTGAATTTCTCACAAACTTGTTTCAGAAGCGGTTATGGAGGTTGGCTTTTACCAGATAATAGATTTTGGTAACTAAAATAATTATCTGTTTGGCACAGGGAAATGCCAATTTCTCCGGAGAAAACTAGAACAAACAAATATTGTCTTACCAAGAGGATGCATAAATTTAGAGAATGTGAAACTGTTAGTTTTTTCTGACAGATTGGCTTACAAATGTATTTGTACTTATGTTATATTTGCAACAGAAGTAAATAAAAAAATACAAAATACGAATATTTTTATTTAATAAAAAAATAGATAAAACAAATATTTTTTTGATAAATATTTCAATAACACCATCTCCATTCATATGGAAGATCTTTTTAACGCTAACAAGAAGTTGATATTGATTGACCTTTCAAAGTGTTAGTAAAATGCCAAAGTTTTCTTCAATTTTCCTCTTAATAAATATTACATTAGGAAATACTTAATGATATTTTTAAAGTAGTAAGAAAAAAAGTGTAGGAATATTTTAATAAAATTGGCTATTAATAAAAACTTTTATCTTGAAGTGATTATTATTTTTTAATGTGTGTAAAAGATCTTAAATTTTAATCACCGTGTAACAGAAAAAAATGTATGTTAATTCTCTATATAAACAAATTGTATAATTTATTTAATTAAATCATCAATTAGTGTTCGCATAATTTGGGAAACATTGTGATAATTGTTTAAAATGAGGGGATTATGATGATTTTTCGTATTATATATTGGCAGTTGTTTATATCCCACCCTTACAAAACACTGTTACAGAGTGACCACAACATAATTATTGTAAGTACTTAAGCTTTTTATATTTTTTAAATTTAATTTTTTATCAATTAAGTAACTTGACTATTACTTTTTATGAGATTCTAATTTTGTAGTTAATATATAACGATATTAAAATTATTATTTCTCTAAACTATCACATTTAATAGTTAATATATAACTTGAAATTAATGAAAATATTGTAAATAATTTTTATTCATTAAAAATATGTTGAATAATATATAAAATTAGTAAGACATAATTCCATTAGTACAATGCATTACTTTGTTATATTCATTATTATTGATTTATCTCTCCGATTTTAGTCAAATGAGAGTATAATAATATCTTCTATATATGATTGCCTTTTCTCTTTCTTTTTCTCAGACTGAACTCATCTCTACTAGCACGCAGTATACATGTATGGCTTTCTTTTCCTCTCTCTCTCAATGCATGTCTTCTAACATGGAATGTACATGTTTTTTTCTTATTTTCATAAACATGAACTACTTGTTACTGTTATCAGATTTCTGGTAGATTATATATATACCTTTACTATTTCAATTTTGTATTTTGATTCTATTCTTCTGAGAAACTA


Gene Sequence:
>Vu_12663(+)
ATGACAATGAGAGACTTTTCATTTTATCAAAAAGCTTTAATCGTACAAGGAAATGGCAGGGAGATGTGGCAGATGGACTATTATCGGGGCAATCCAGTCTTCTTTGTTATCATCAACAACTCCAAATTACAGGTGATGTTCTTGTTTCCTTTTTATGTTGTTCTTATGCTACACGCTTTTATTAATTTTACTTGTGCTAGTGAGAAATCTCTGCATTTGTAGAATGTGGTATACTGGTTTGAAGCCTATGTTATTTGTCATAACTTGCAGAAAGTGCCAGAGGGATTTCTGAAGCATTTGAATGAAGACTTTCAAAATGCAGTTCTTATTGGTCCTTCTGGTGATAATTGGCAAGTGACTATTTTGAAGAAAGGAAATAACATTTATCTGTACAATGGTTGGCCACAGTTTCTGACCGACAATTCAGTGATGCTTGATGATTTCTTGCTTTTTACATATCATGGAGGAAACTGCTTCCATGTTCAAATTTTTGGTAAGAATGGATTGGAGAGGCTATGTTTCAAGCAAACAAGACAAGATCAAGTTCTGATGCCAAGTTTGGTGAGGACAAAGAAGAACACACACAGAAGAACTTCTTCCAGTCCATTCCTCCACCAAGCCAAGTCTTATAAAAAAGGTAACTCTTATACTTTCTCACAGATATGTGGTAATTACAAACTCAAAATGTTTTGAAAAGGAAGAACATGCAAACAACATTGTAGATTTGCCCTTTGTTATTCCCTCTAGCCCCCAAAAATATCTCATTTCTTAAATTTTGTTTTATGTATGTCATAGGTCTGTCTTTCAGCAGCAAATTCTCATTTTCAAAGCTCAAGAGTTCAGTTAAAATTGAAAGTTCAGAAGCATGCTACTTGGCAGATTCTTTTACCTCTCGCAACCCTCACTGGAAGCATCTCATGACTAAATGCAATGTAGAAGATCACTGCACACTGGTAAATATGAATTGAGTGACATTCTTATTTCACAAGCTAAAATCAAATCATTTTTCTTGATTCGAATGTCAGTTTATCTGAGTTATATCATACATTTCCTAGTCACAGTATACTTTAGAACAAGTATTAATGTGGTATAAATTGGGATTTGCATGCAGCCAATTGCTACTGAGTTTGCCAGGAAGCATATTCCTGAAACAGTGAAACAGATAATTCTTTGGAACACAGAAGGAAAATTTTGGGAAGTGGTAGTGACTTGGTTTGGATGTCAAAATAAGAGGTATACTCGATTTACAACAGGATGGGGAAGATTCGTTCGTGATAACAGACTTATGAGGGGTGACACTTGCATATTTGAACTTGAAGATCAAAACCATTTGAGTGTTCACATATTCAGAACAGGATTTTGTGCACCAAAATTGTTTTAAAAATCAGTTTGAATTCAGTCTTTGAGTAGGTTGTATTGATTTGATTCATGTCATAAACACAGTTAAATCTTAGACATTATTATTAATCTTTCTAGTATAAAAAGTTCATTACAATGTATTATAAGATGAATTAGAATATAAAAATCCATGATTAAAGTATCCATTTCTAATTCAAGTAATTAATTTAACAATAGGTAGTAATAACATACTCTTAAAAAACTGTTTTAAACTTCAAACAGAACTTTTAGTTTTGTTAAGAGAACACATAATTTTCTTGCACTCAAAGGAATGCATTTATGCAAACTATCTAGCATTAACGTTTAGGAATGTTAACATGAATTTTCAAACAGAAACTGAGATATAAGGTACTCTGTTTCATTTCAAACATATCTTTATGCCACTCACAACAGAGTACATAAAACAACACAAGTGGTTGTGCTTTGTGCAATAACACAAATGATGACCAAAAGTGGGATGTGGATGGAAAATAGTGGGCCTGTTTCCATTGATGAACATAACTTGTGCAGAGAAGGCATTGTCGTTTTATTCTTTTATAGGGAGAGCTTTAAATGGGTGGCTCTGCGTTTGTTTCCCCAGCGGGTAACTGATAATCAAAGGAGAATCAAAGGTCCAAAGGCAAGAAATGTCAAAAACAAACCCGTGTTCCAATATCCTAGCATAAAAGCTAAACAAAACACACGGGGTTTCAGGATTTGCAATAGTTTTGAATATACAGTTTGATGGCTGGTGGTGTGAAAAAATACCCTCTCTTCTTCACAATCTTCGTTCCAGAGCAACACTCTCAAACTATGGTAATGGTATTTTCTTGACTACTAATTAATATTTATCTTCAAGTCTATTTTTTTCATTAATTTCATTGTTTTATGAGTGTTGCTACCACTCCTTGTTTATGGTAATCTGGTTTCAAGACTATCCTAGTGTTTTCTGTGATAACCTGCAGAAAGTTCCAAAGGTGTTTTTGAAGAAATTGAATGAAGACTTGTCGAGTAATGCAGTTCTCAGTAGCTCTTCTTCTGGTGACAAGTGGCAAGTAAGTGTTCTAAAGAAAGGAAACGAAGTGTATATGCAAAATGGTTGGCCTAAGTTTGTGACAGATAGTTCAATTGTGCTTCATGATGTACTGCTTTTTACATATCATGGAGAGAACTGTTTCCATGTTCAAATTTTTGATAAGAATGGAGTGGAGAGGTTATGCCTCAAAGAAACAACACAAGAAAAAAAAGGTAAGTAACCTGTGTTAATTATCTGGCAAATTTGATTTCTCCAAATGTTTTGAAAGGAACAATATGAAACAACATTGCAGATTTGATGTTTGTGTTCTCCCTTCCCCCAACATATCTCATTTTCTTAAACTTTTGTTTGAGGTTTTTGGAACAGATATGCCTTGCAGAAACAAAGGCTTTATTTTTACTGGTAGTGAGACAATGAAAACAGGGCAAAAACAAACTGCCACCCCAAGTTTGGCAAGGACAAAGAAGAAAAAAGAAAGACATTTTTCTCCTGGAAAGTCTCATCAAGAAGGTAAACATGATGTTTAAACATTCACGTAAATGTGGTTACAAACTCAAAAATGTCTCATTTCTTAAGTATTTGTTTCTTTAACAGACTTGTCTCTTCCTAAGGACTTCCCTGCTCCTCAGCATTCAGTTGAAATTGAAAGTTCAGAAGCATTGAAATTGGCCGAGTCCTTTACCTCTAGCAAACCTTACTGGAAGCACCTCATGACAAAATGTCATGTGGAAGGTCGTTGCATATTGGTAAATGTCAATCTATTTTCTTTACTAGTGCATTATAGAATTGTGTGATATGAATTGTGGGTTATGATCATTGCTTGCAGCCTGTTGCTACTAAGTTTGCCAGAAAGTATATTCCTGAAGAAGTGAAACAGATCCATATTGGAAATTCCGAAGGAACACTTTGGAAAGTTCATGTGAGTTGGTCTAAAGGTTATGCTCACTTCAGTACAGGATGGGCAAATTTGGTTCGTGATAACAAGCTCATGAGAGGTGACACTTGCATATTTGAACTTGAAGAAAACCTTCATTTGAGGGTTCACATATTCAGAACCAGATGTGCACCAAGTTAA