Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12637 LG3 19036755 19039166 PREDICTED: B-box zinc finger protein 24
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   photomorphogenesis, vegetative to reproductive phase transition of meristem, photoperiodism, flowering, photoperiodism, flowering, response to salt stress, regulation of transcription, DNA-templated, photoperiodism, flowering, regulation of transcription, DNA-templated, photomorphogenesis, photomorphogenesis, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of shade avoidance, response to salt stress, vegetative to reproductive phase transition of meristem, photomorphogenesis, photoperiodism, flowering, vegetative to reproductive phase transition of meristem, response to light stimulus, vegetative to reproductive phase transition of meristem, positive regulation of shade avoidance, positive regulation of shade avoidance, seedling development, photoperiodism, flowering
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus
Molecular Function   enables   transcription coregulator activity, protein binding, protein binding, DNA binding, zinc ion binding, protein binding, DNA-binding transcription factor activity, protein binding, protein binding, protein binding, protein binding, protein binding, protein binding
SNP Position Effect Amino acid change
G/A 19036764 3_prime_UTR_variant
A/G 19036892 3_prime_UTR_variant
A/G 19036967 3_prime_UTR_variant
C/T 19036980 3_prime_UTR_variant
C/T 19037300 downstream_gene_variant
A/G 19037453 downstream_gene_variant
T/C 19037462 downstream_gene_variant
G/A 19037474 downstream_gene_variant
C/G 19037543 downstream_gene_variant
G/T 19037725 splice_region_variant&intron_variant
G/A 19037815 missense_variant p.Pro134Ser
G/A 19037882 synonymous_variant p.Thr111Thr
A/G 19037885 synonymous_variant p.Cys110Cys
C/T 19037895 missense_variant p.Gly107Asp
A/T 19037922 missense_variant p.Leu98His
C/A 19038084 upstream_gene_variant
G/C 19038086 upstream_gene_variant
A/G 19038177 upstream_gene_variant
A/T 19038196 upstream_gene_variant
G/C 19038207 upstream_gene_variant
T/C 19038221 upstream_gene_variant
C/A 19038257 upstream_gene_variant
A/T 19038258 upstream_gene_variant
C/A 19038386 upstream_gene_variant
T/A 19038397 upstream_gene_variant
T/A 19038504 upstream_gene_variant
G/A 19038604 upstream_gene_variant
G/A 19038697 synonymous_variant p.His42His
G/A 19038745 synonymous_variant p.Ala26Ala
G/T 19038915 5_prime_UTR_variant
T/A 19038963 5_prime_UTR_variant
A/T 19039161 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12637.1
MKIQCDVCEKAPATVICCADEAVLCAKCDVEVHAANKLASKHQRLLLQCLSNKLPRCDICQDKAAFIFCVEDRALLCKDCDEPIHVAGSLSANHQRFLATGIRVALGSNCTKGNEKGHMEPSNPNAQEVPVKVPSQQVPSFTSSWAVDDLLELTDFESPDKGQKQSLEFGELEWLADAGLFGEQFPQEPLAAAEVPQLPVTHTSNVASQKASKSFMSYKKPRIEVLDEDDEEHFTVPDLG*


CDS Sequence:
>Vu_12637.1
ATGAAAATTCAGTGTGACGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAAGCAGTTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGCTTATCAAACAAGCTTCCCAGATGCGACATATGTCAGGATAAGGCAGCTTTCATATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGATGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCGAACCACCAGCGGTTTCTTGCTACTGGTATTCGGGTGGCTTTGGGTTCTAATTGTACCAAAGGCAATGAAAAGGGTCACATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGGTCAGAAGCAGTCTCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAACAGTTCCCTCAGGAACCTTTAGCAGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACCAGCAATGTTGCCTCACAGAAAGCTTCTAAGTCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGAGGAACATTTCACTGTTCCTGATTTAGGCTAG


Promoter Sequence:
>Vu_12637::LG3:19039166-19041166(-)
ATTCCTTAATTAAGTTAACATACAATTTGTATTAAGATTAGGTGTTTAGAATAACAGAATGATTAAATCTATCTCCAAATTCTAATTCATTTTCCACTTACTAGATATTTTTATACATCATGATGTTTCATGATATATAATTATAATCTAGATAGAACATATGAACATGATGAGATTATATTGAACAAGAAGATTTACATCAATTTAAGTTCATTACATCCAATTTTAATAAAATAGGAGTTTAAGTACTCTTATTTGTCCAATCCTAATGAAATAGGAGTTATTACATTCATTGCACAAAGTCTTAATGTCTTAGAGTTGCCTTTGACCAAAATTATGAGTTCTTTTATGTTTTCATACTTTGGAACTACCTTATCTCTTTAATTTACCACATAATAACTACTTCTGATTTGTTTTTAACTACTCCGTCTAACTGTGCAAATATTTTTATATTTTCATTTTCTTACACAATACTTTACAAAAAGACAAAATAACATTTAACTTGAACTAAATAGAAAAACATTACACCTTTTAATAAGAAAAACACTAAATACATAAATAAATACAAATTTAAAATAAAAATAAATATGAATAATAAATATTAATCACATTTATCGATAATCAACCAACCTTCGTACGTTAATTTTTTTCATGCCAGATTTCAAAGTTTGTACCATCAAATTGTCCAACACTTCACATGCACATTCCAGTAACTACCTTCAACTACCTAAACATTAAACAATTCTTAGTATTATTTTCTCCATGACAGATTCTAAAGTTTGTCCCATCAAATTGTCCAATACTTCACATGCACATTCCAATTACTCCCTTCAACTACCTAAAAATCAAATTCATTCTTAGTATTGTTGCTTTCCATTTGAAAAAATAAGTGTCTACTCTTCTTCAATACAATGAACTTTTTAACCAATATATATATAATATATATATATATATATATATGTGTGTGTGAGAGAGAATTAAAAACATCAAACGTGTTAAGTGGCATGTTTTTAGCAAGAGGATATGTTAAAAAAAATAATAAAACATGTGATCAAATACATGTTTTTTTCTTTAAAAGAATATAAAAAGAATGCTTTTAATGAAAAAAATTGCCAAACACTTGATGTAAAATATTATAATACATTATGAGTTTTTATAATTTAGCAACAAAAAAAAATGGTGCTTGTCCTATTGTGAAGGGTGATTTCTTTTATTCCAAACTTTTGTTTCGATTGGACGTCAAGCATAGCAAAAGATAGTTCAATTTAAAGTGAAGAAAGAAAAACAGTATGATATGTTAGATTTTTAGAATAGAAAATTAAAATTTGATATACACAAATTTTTATATTTATTTGATATAATATTTCTTTTCTTTTAAAAATATAAAAATTTACTTCTTTTTTTATAACTATTTATTCTTATAATAGAAGTGAATATCTATGGTAAGAGAAAAAAAAATTATTGTTGAAGAAAGAACAACACTATGGACAAGATTAAAAACTCAAACCATCACTATCTATATTATTCTTGTTTATCTCTTACCTACTTTTATTACTACCATTTTTCTTTTGTGTGGTCTCTGTCATTTTTCTTTTTGTGTTAAACATTTTGTAAAATAAAAGTGGTTTTGGTTTCATCAGAGATTTAAGTGAAAACAACATCAATGAGGATGGTCGTTATTACTAAGTATACACCCTTGGTTGATTTATACACCTCCAAATTGAGGTGTAACCACGTAATTTTTTTGTCATTATTATGAAAAGTTTAGCAAAATTTCAGTATAAAAAAGCAATTTTGTATTGATTAGAATCAGATGCATTTCCCTTTGTTCATTTTGCAGAACATGTAAGTCACAGTCAGCAATTGTAGGACAAGGACCACACATAAGAATATCTAAAACTCCAACTTGACGCATTCGATGTGGAACTTCCACAGCCACACGCATGTCAAGCTGACCCCACTCTTCATTATTCACATACGTAAGATCTCATGAAATCTCC


Gene Sequence:
>Vu_12637(-)
ATCTTTGCATCACTCTTTCACCAACTGTACCCTCCTCCAGTCACTTCCTTTTCCATGGCCAAACATTTTCTCTCTACATTAATTACTTAGCACTGTCACTGTGAATGCTATCTTTTGTTTTCGATCCCATTTTTGTGTTCATCTTCGGCTTGATCTATTCTATTGCTCATATTCTCGGCTTATAACCGATAAAGCTGTTCACAATACAATAGGAAGGTTTGTCTTGTCAGGTAGTGGCTGCAGTGGAGGTTCTCCTGTTTTGTGCGGATATTGATATTGGCATGGTGTTTTTCTGAACCCCATTTTCCGAAGAAAGTGAGAGAAGAGACACTGCTAGGAAGAACATGAAAATTCAGTGTGACGTGTGTGAGAAAGCCCCGGCAACAGTGATTTGTTGCGCAGATGAAGCAGTTTTGTGTGCCAAATGTGACGTTGAAGTTCATGCTGCAAACAAGCTTGCAAGCAAGCACCAGAGGCTTCTTCTTCAATGCTTATCAAACAAGCTTCCCAGATGCGACATATGTCAGGTATTTCTTCTCTTTTTCTACTTTTGTGATATCATCAAATACTCTCACAAATCGTTATACTTGGAGGGATGGATTTGTTTCATTTTGCCCAAAATTTTTGTGTGTGTTTGTTTCATATGAGAAGCAACAGTTTAAACATCAAACACAGATATGCATGTAACAAAGAAGATCAGATCTAAGTTCTAGTAAATTGAATCTGTTCGGCATGCATGGTTATGCTTTTACTTGTGTCAATTACTGTCATGGCACATGAGAATTTATTCCGGCAGAGGGTGTTTCAGAAAACTTCAAAGCATTTATGAGCAAGGATTGTAGAATCTGATTCCAAAAACTTTATATTTAAACTTGTATTGTCTTAATGCTATGGTATTTCTTTATGAATGTTGAAGCCAAAAGTTTGTGGTGATTTAAAGCACTAAGTTTACGAAAAGACCTAACTGGTCTGTATAATTGTCTGATATCTGTGATGTATCGTTCTACCAAAACTTCATTCATCTTTGACTATTTATGTTAAAGAATCATCCTTATGTAATGTTATGAGTAGGATTTGAAACCGGTGTTGAACATGGATAACTTTATTAACTCTGTGATGTGTGATATAATTGTAGGATAAGGCAGCTTTCATATTCTGTGTTGAGGACAGAGCACTCTTGTGTAAAGACTGTGATGAGCCAATTCATGTAGCTGGTAGCCTTTCTGCGAACCACCAGCGGTTTCTTGCTACTGGTATTCGGGTGGCTTTGGGTTCTAATTGTACCAAAGGCAATGAAAAGGGTCACATGGAACCATCTAATCCAAATGCACAAGAAGTTCCTGTGAAAGTTCCTTCTCAGCAAGTGCCTAGCTTCACATCCTCTTGGGCAGTTGATGACTTGTTGGAATTAACAGACTTTGAGTCACCAGACAAAGTAAGGCAGCTTTGTTTCACTACTGTAGTTACATGTATCAGCTAAGAAATTAGAGTGATTTCGATAGAAGAATCTAGTATGATTAAGAGCTACCATTTTTTTCTGTTACCTCCAAATATCCGTTTTGAAATAGCATACAATCTTGCCTCACCTTGCATATGCACACAAATTTTTGTTTGTTGGTGTGAGGGATGAATTGAGAGATTAAGGTTTATGAGGTTAGAGTTTTATTCTCACATTGCAGTATATGAATGTTTCCTTTGCACATGATTGAGCACTGAATTCTATATGTAAAAAAGACTCATCGCATTGAAGGTAGGTTTGCTTCTATGTAGCACATTCTGGCTCTTGATTCTGGTTTATATGACTTTCTTTAAACAAATGATGTATCATATTTGCACCATAAACTGTGTGGAGAATTATGGTAAGGAGTTGTGGTCACTTAATTATGCTGTTGCCCTTTTGTGTTGTTATAATGTTTGGAACTGATTCATCTTTTTCAGGGTCAGAAGCAGTCTCTGGAGTTTGGAGAGCTTGAATGGCTAGCAGATGCAGGTCTTTTTGGTGAACAGTTCCCTCAGGAACCTTTAGCAGCTGCTGAAGTTCCCCAGCTTCCAGTGACACATACCAGCAATGTTGCCTCACAGAAAGCTTCTAAGTCCTTCATGTCTTACAAAAAGCCTAGGATTGAAGTTCTAGATGAAGATGATGAGGAACATTTCACTGTTCCTGATTTAGGCTAGAACACATGGTCATGTAAACAATTGCATACAATTGATGAGTTGTATATGCATTCTAGATGGAGATGTTTATGAACTCTTGGATATGCATTATCTAGCTGAAGCTCAGGACTAAGAGGACAATTTCATGTATCTGTGTAGATTGATGAGTTGTATATGCATACTTCTCCTAGGACCTTGAGTAATGAAGTATGTTAACTAGTTCTATGGAGTTGATGAATATCTCACTTTAGGAGC