Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12586 LG3 18492150 18494075 PREDICTED: transcription factor MYB46
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   defense response to fungus, positive regulation of secondary cell wall biogenesis, positive regulation of transcription, DNA-templated, defense response to fungus, positive regulation of transcription, DNA-templated, regulation of secondary cell wall biogenesis, positive regulation of transcription, DNA-templated, plant-type secondary cell wall biogenesis, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, defense response to fungus, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated, positive regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, transcription cis-regulatory region binding
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
G/T 18492179 missense_variant p.Phe279Leu
T/C 18492276 missense_variant p.Glu247Gly
G/A 18493518 intron_variant
T/C 18493562 intron_variant
A/G 18493749 intron_variant
G/T 18493788 intron_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12586.1
MRKPEVSAKNSSNINNKLRKGLWSPEEDDKLMNYMLNSGQGCWSDVARNAGLQRWSQIAARLPGRTDNEIKNFWNSTIKKRLKNMSANTSPNGSESSYEPNKDLNMAGFTTSNTHQDQHADFMPMFNSSSSPSPSMHATVLNSIIDRLPMLDHGLNVPVSGGFFNTTGPCFSTQSGVDHKGLYLENGGVFGSVNIGAEGDMYVPPLESVSTTSDHNLKVESTCNTDTNNSYFDDINSIILNNCSNKRTENRAGVENLFQQELTMGEWDLEELMNDVSSFPFLDFSNIQ*


CDS Sequence:
>Vu_12586.1
ATGAGGAAGCCCGAGGTGTCTGCAAAAAACAGCTCCAACATTAATAACAAGCTTCGAAAGGGCTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGCCTTCAAAGATGGTCTCAAATAGCGGCGCGCTTGCCTGGGAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACATGTCAGCCAACACCTCACCAAACGGAAGCGAGTCCTCATATGAGCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCATCAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCATCTCCATCACCATCCATGCATGCCACAGTTCTCAATTCCATTATTGACAGGTTGCCTATGCTAGATCATGGACTAAACGTGCCAGTTTCGGGTGGATTCTTCAATACTACTGGGCCATGCTTCTCAACGCAAAGTGGAGTTGATCACAAAGGTTTATATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACCTGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGCATCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGGCTGGAGTGGAGAATTTATTTCAACAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAACGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA


Promoter Sequence:
>Vu_12586::LG3:18494075-18496075(-)
GGATCTTCTTTCCTCGTGCAGAAGTGGGTCTCTACTTTATCCCTTATACTGAAAAGATTTTCGTTGTTTTGATTTGATGCATTACGATTATCTTAGTGCTCACACCAGTTAAGCAGCTCGCAATTTATCTTTCTATGCTTCTTCCAATCATCGAACGAGCTTTTGAGAAGTGTTTAGGCTCCTACATGCTCCACCACTTCAACTACCACAACTCCTCTCAGCATGGTTTTGCTTCAAGCTTTCATTTTAAAATAAAGAAAATAGATTAATTAATTAATTAATTAATTAATTAACCCTCATGGCTAAGATATTATCACAGGTACGTCAGCAGAATGCTATAACCTCCAAATAAAAAACGAGGTAAATTTGGGGTCTCCATGTCAACTTGTTTTGAAGGTTGTAATGTTAATTAGTTTATTATATAAGGAAACTGCTACTGTCCATATGTATGAAATTGTCCTTGCTGCTTTAAAAAGATGGTCCAAAAAGTCAATTATCTGTTGCACCATTTCTTTCTTCTTTTTCTAGCATGATTCACCTTTATGTGGAGGAATATGCATGACAAAATCAAAGAAGGCTAAAGTGAACACTTCCTTCAATTGCAATTTACTAATCTCCATCTTTTCATTTACTATTAATCAAAGTCAGCATTTCTCTGCAAAAATAGTAACCCCTTGGCTGTATATATATCTCTTAACCATTCCGCAGCCATATACTCGGACAATACCTTGACATGAATTATTTCAAGTAACTTTTCTAATTAGAAATTTTTAGTCTACCAGGAAATTTTGAAGCACTTTTACTACCTCTTAATCTGATAAGATTTTCATTTTCTTTTTCAATAGTGTATTATGCAAGAATGAAACTCAATTTTTTTAGTGGCTTGTGGCCAACTAATTGTCATTGGGTCCCTTGCTAGGAAGTTTATAAACAATATAATTAAACATATTATTAACGAATCTTTATTTCTATTTGGTTGGTGAAAGTAACAGCTACATAGTATTTGGCTTAAAATCAATTAAGATCAAAGTCACTTCTATCAGATCATCAAACGGCACTGATAAAACCTTCCCTCATCAGCTGATTATCATGGACTCCTTCTGATGTTAGCGTACATCCAGTGTTTTTTTATACAAGATGTGTTGATTTAACAATACTATATAGGGAAAAGGTTAAGAGAGAAAGAGACTTAAAAATTCTTCCTTCGTCGCTTTTCACGAATGTTCAAAAGCGTATATAATATATATTCGTACATATATATTGAGTCTGTTTTACTTCTTTTTATGTAATAATGAAACTTAGGCATGTGGATGTTATGCAGAAAAAGTAATTAAAAATATAACTTACATACATTATTTTTCCCAGAATGTGCCGTCATATATAAAGCTTAGTTTTATAATATCTTCAAGAACACGTGTGGGGGTAGAGAGGAAGAGATTATGTGAAGTGGAAGCAAATATCTTGGCTTGGTTACAAAACAAAGTTTCTTGTATCTACATTTTTTGTTTATTCATTTATGTTTTGGTGCGTATGTGTGTGTGGCATCCTATGGTTCACGTATGATGACTCCCTTCTGAGTGAAGAAAAAATTAGAAAAGAAAAAAGACAAGGCCATGGAGTCAAAGACAAGAAGACACCATCTTTCTCAATCTCTCATGTCCCTCTCCAAACCGTTTTCTACTGACTCATCAACCAATTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTGACTCTTCCCTATTTTGTAAGCAAACCCCACAACCATCACCATCATTATCATCATCATTCCCACCCTATGAAGCTTCTTTGTTATCTTTCTCTCTCTATAAATCCTTCTCTTATCTTACATCACACCCGTTGGAGAGCAAATTGCTCATCAGTGGAACACTGCTTCTGGGGTCCGGATCATACAGTAGTGCACA


Gene Sequence:
>Vu_12586(-)
ATGAGGAAGCCCGAGGTGTCTGCAAAAAACAGCTCCAACATTAATAACAAGCTTCGAAAGGGCTTGTGGTCACCTGAAGAAGATGACAAGCTCATGAACTACATGCTAAACAGTGGACAAGGTTGTTGGAGCGATGTAGCCAGAAATGCTGGCCTTCAAAGGTGTGGCAAAAGTTGTCGCCTTCGATGGATCAATTACTTGAGGCCTGATCTCAAACGAGGTGCATTCTCTCCACAAGAAGAGGAACTCATCGTCCATTTGCATTCCCTTCTCGGAAACAGGTTCACCTACTCTTCCTTCTTTTCTATGCCATGTTTAATTTGAACTGATCAAAGTATATATCATTAGAATTACCAAGTGCTGTTATTAACTGAAATATGTCATAATGCATTTTAAACTTGATTCTATATATATGATCTTAAAGAACTTCTGTAGTACTTTTTGTACGTGTATTATGTATTTCTGAATCCAAACATACTTATACCAGCGTGTGTATGTACGCATACATCTCAAATATTTATCAAGCAAATCAATGTTTGACATGTTACACCCACTAGCTCCTTCTAACTTTAGCTATGTTGTCTTTATTGGAAAGGTGGAAAGCACGATAGAGACATGATTAATGTTTCAAAATTATTTACTTGGTGCAGCCATTGGATGGGGTCAATATAAATGAAAATTTATGAAGAATAATCAAATGCCATGTGCCAAAATCTCCTATAAAAAATGCCTTTATGGCTGTAACTTAAACTATGCAAGAAAGTTCACACATATGCATATATACCATTCCAAACTTACTATTTGAAACAGTAGCAATTCTAAGATACCTAGCCTTTACAATATGATCGACAAGATTTTAAAATGGTTTCATTAAGACTTTGGTTGCTAAAATCTACTTCCCCTTGTCTAAGAAATGGCACCAATATTCAAAGTTAAAAAATACATGCACAAAACATGCATAAATATAATATACATACATATTTATAAGTCTAGGCGGCTCCTTGTAGATGACAAAAGGACATATGAAAATAACATAAATCTATATGTGGACTTCGAGTTGAAGGCACTCTATAATTTGAATCAACTTAACAAAAGACTACATATACATTAGCCTCCATGAAAGCATGCACTGTTTTTAATACGGACACAGCCACCAAACACAATTAGTTTGTGCCATGTATTAACCTGACAAATATTCATTTTTGTTCCACTTTTTAAAGATGGTCTCAAATAGCGGCGCGCTTGCCTGGGAGAACTGACAATGAAATTAAGAATTTTTGGAATTCAACAATAAAGAAAAGACTGAAGAACATGTCAGCCAACACCTCACCAAACGGAAGCGAGTCCTCATATGAGCCTAACAAAGACCTTAACATGGCAGGGTTTACTACTTCTAATACCCATCAAGATCAACATGCTGATTTTATGCCTATGTTCAATTCATCATCATCTCCATCACCATCCATGCATGCCACAGTTCTCAATTCCATTATTGACAGGTTGCCTATGCTAGATCATGGACTAAACGTGCCAGTTTCGGGTGGATTCTTCAATACTACTGGGCCATGCTTCTCAACGCAAAGTGGAGTTGATCACAAAGGTTTATATTTGGAAAATGGAGGAGTATTTGGGAGTGTAAATATTGGGGCAGAAGGGGATATGTATGTTCCTCCTCTAGAGAGTGTTAGCACTACTTCTGACCATAACCTGAAAGTGGAGAGCACCTGCAACACAGATACTAACAATAGTTACTTTGATGACATAAACAGCATCATCCTTAATAACTGCAGCAACAAGAGAACTGAAAATAGGGCTGGAGTGGAGAATTTATTTCAACAAGAGTTAACCATGGGAGAGTGGGACTTGGAGGAGTTGATGAACGATGTTTCATCCTTTCCCTTTCTTGATTTTTCAAATATCCAATAA