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Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

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Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12583 LG3 18462664 18466553 PREDICTED: probable serine/threonine-protein kinase At5g41260
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Annotations  
category   relationship type   keyword
Biological Process   involved in   brassinosteroid mediated signaling pathway, response to abscisic acid, response to abscisic acid, brassinosteroid mediated signaling pathway, protein phosphorylation, response to salt stress, brassinosteroid mediated signaling pathway, response to cold, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, response to salt stress, brassinosteroid mediated signaling pathway, response to cold, brassinosteroid mediated signaling pathway, protein phosphorylation, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, protein phosphorylation, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway, brassinosteroid mediated signaling pathway
Cellular Component   located in   plasma membrane, plasma membrane, plasmodesma, plasma membrane, plasma membrane
Molecular Function   enables   protein binding, ATP binding, protein binding, protein kinase activity, protein serine/threonine kinase activity, protein kinase activity, protein serine/threonine kinase activity, protein binding, protein serine/threonine kinase activity, protein binding, protein kinase activity, ATP binding
SNP Position Effect Amino acid change
G/T 18464097 missense_variant p.Arg177Met
A/G 18464124 missense_variant p.Tyr186Cys
A/T 18464126 stop_gained p.Arg187*
T/G 18464182 intron_variant
G/T 18464547 intron_variant
A/T 18464577 intron_variant
A/T 18464585 intron_variant
A/T 18464704 splice_acceptor_variant&intron_variant
C/G 18464873 synonymous_variant p.Thr312Thr
C/A 18464874 missense_variant p.Pro313Thr
T/A 18465401 3_prime_UTR_variant
A/T 18465519 3_prime_UTR_variant
A/T 18465880 intron_variant
A/T 18466257 missense_variant p.Asp481Val

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12583.1
MGARCSKFSLCWWPSHVKSNLHDLSDNDDDGKRNEKDPWGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYKGRLEDDRTVAVKRFNKSAWPDSRQFLEEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVPSYVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAVHEILDKVGYKDDEDVANELSFQMWTNQIQDTLNSKKQGDSAFHARDFSTAIDCYTQFIDGGTMVSPTVYARRCLCYLMNDMAQEALGDAMHAQSISPTWPTAYYLQAAALFNLGMDNDAQESLKDGTTLETRKYRN*

>Vu_12583.2
MGARCSKFSLCWWPSHVKSNLHDLSDNDDDGKRNEKDPWGGFSEYSLDQLRVATSGFSPDNIVSEHGEKAPNVVYKGRLEDDRTVAVKRFNKSAWPDSRQFLEEARAVGQLRSERLANLVGCCCEGEERLLVAEFMPNETLSKHLFHWEAQPMKWAMRLRVALYLAQALEYCSSKGRALYHDLNAYRILFDQEGNPRLSCFGLMKNSRDGRSYSTNLAFTPPEYLRTGRITAESVVYSFGTLLLDLLSGKHIPPSHALDLIRGKNFLLLMDSCLEGHFSNDDGTELVRLASRCLQYEPRERPNVKSLVTALTPLQKETSVPSYVLMGIPDRSLSSKETVSLTPFGDACSRRDLTAVHEILDKVGYKDDEDVANEVIHRFNFFLYLDF*


CDS Sequence:
>Vu_12583.1
ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACGTCAAATCAAACCTCCATGATTTGTCTGATAATGATGATGATGGGAAGAGGAATGAGAAGGATCCTTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGAGTTGCCACCTCAGGATTCTCACCAGACAACATTGTCTCGGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGGAGGCTTGAGGACGATAGGACGGTTGCTGTGAAGCGCTTCAATAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAGGCACGTGCTGTGGGGCAACTGAGGAGTGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCTAAACACCTTTTTCATTGGGAAGCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACACCTCCAGAGTACTTGAGGACAGGAAGAATCACTGCTGAAAGTGTAGTTTACAGTTTTGGCACCCTATTACTTGATCTTCTCAGTGGAAAGCATATCCCACCGAGTCATGCACTTGATCTTATACGAGGCAAAAATTTTCTGTTGCTAATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCGCGCTGTTTACAGTATGAACCTCGTGAGAGACCAAATGTTAAGTCGCTCGTGACTGCTCTGACCCCTCTTCAGAAAGAAACTTCGGTACCGTCATATGTTTTAATGGGCATACCAGATAGGAGTCTGTCATCAAAGGAAACAGTTTCATTAACACCTTTTGGTGACGCTTGTTCCAGAAGAGATCTGACTGCAGTACATGAGATTTTGGATAAAGTGGGCTACAAGGATGATGAAGATGTTGCTAATGAGCTTTCCTTTCAAATGTGGACAAATCAAATACAAGATACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCTACAGCCATTGACTGCTATACACAATTCATCGATGGTGGAACCATGGTATCACCTACCGTGTATGCCAGACGCTGCTTATGCTATCTGATGAATGACATGGCTCAAGAGGCACTTGGAGATGCCATGCATGCTCAATCAATATCTCCAACCTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAACCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGAACAACACTGGAAACCAGGAAGTATAGAAACTGA

>Vu_12583.2
ATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACGTCAAATCAAACCTCCATGATTTGTCTGATAATGATGATGATGGGAAGAGGAATGAGAAGGATCCTTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGAGTTGCCACCTCAGGATTCTCACCAGACAACATTGTCTCGGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGGAGGCTTGAGGACGATAGGACGGTTGCTGTGAAGCGCTTCAATAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGAGGAGGCACGTGCTGTGGGGCAACTGAGGAGTGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCTAAACACCTTTTTCATTGGGAAGCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACACCTCCAGAGTACTTGAGGACAGGAAGAATCACTGCTGAAAGTGTAGTTTACAGTTTTGGCACCCTATTACTTGATCTTCTCAGTGGAAAGCATATCCCACCGAGTCATGCACTTGATCTTATACGAGGCAAAAATTTTCTGTTGCTAATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCGCGCTGTTTACAGTATGAACCTCGTGAGAGACCAAATGTTAAGTCGCTCGTGACTGCTCTGACCCCTCTTCAGAAAGAAACTTCGGTACCGTCATATGTTTTAATGGGCATACCAGATAGGAGTCTGTCATCAAAGGAAACAGTTTCATTAACACCTTTTGGTGACGCTTGTTCCAGAAGAGATCTGACTGCAGTACATGAGATTTTGGATAAAGTGGGCTACAAGGATGATGAAGATGTTGCTAATGAGGTAATTCATAGGTTCAATTTCTTTCTCTACTTAGACTTCTAA


Promoter Sequence:
>Vu_12583::LG3:18460664-18462664(+)
ATAAATGTATCTAAGTATCTGTAATAATATGCAACTAATGTTTTTACTTTGATAGTGACCCTTTTACGTGGCATACTTCAATATATAAGACATCAATAAAATATATATAAAAATTCCATATCGTTTATAAATAAAAAGTTTAATAAACAGGATTAGTAAGATGATCAATTAAATGCCTATTTTAAATTAGTCATGGAAAAAGTTGTCCTGATAAAAAAATAAAATAAAATTACCAGTAGTTAATAATGATTAAATCTTCGTCTTACTATTATTTATAATAATCCTTTTCACCGTAGCACCGAAGTTTAAAATAAAATCTAACATACGTTTTAATCTCATTAAACAAGTTAATTAATTACGTTAAACATAACTGTATTTCTATTGTTTTTAATAAAGACAGTTGGTAACTTTGCATCTTTTACAAGGAATTATATGTAAACTGATAAAATTATTACTAATTAAAAAAGTTATTATTTTTTAGTTGAAAAATTAAATATTCACTATCCAAGTTTATTTTACACTTTATTGATTAGAATCAGTTAGTTTTAAAAAAACTATTGTCAAAACACGTTGTGTTTTGACTGATATAAGTTTGAAATATTGCTGATGTCTCTTTAACTGTGAAATAAGTAAGGTTAGAAAGAAAATAAAGTATTTATAAATGTTTAAGGTCCTCGATAAATTTATATTTACTTCTCACGAAAAATATTTTATATCAATATTACCCGATAAACGATTAATAAAGTAACATTAATTTAAGGCAAGTAACTTGTTTAACTAAATTGTAAAATCAACCTAAATTTTTAATAAAAGAATTAAAAAACTGATAAAAAGTTAAAGAAAAAAATAAGTGTATAGTAAATCATCATATCAATGAAAATGGTTGATATAGTATCATCTAATTTTTAAATAAAATAAAACAAACTTAAAACATTTTTTTGTCTAAATAAATATAATCATGTTATTGATAACATTAATGTCAATTACTAAAACTTTTACTTAAATATTATATTTAATATTAATTTTGTGATACATTTTTCTAATATTTTCAATTAAATTATTATTATTATTATTATTAATTAAATATTTATTGTTTAATTTTTTATTAACTGATGATAAAACTATTATCTTATTTTATCATCAGCTTGTTTATTTAAATTTATATATTAAGAAATGTGAAAATTTGTTGTGAATATAAAATAATTTTGAAATTAATAAAACAATAAATAATTTTATTATTTCCAATACAAATATTTTGATAATAATAATAGTAAACAATAATTATAATGGTAAACATTTTCTTTCGTATTATACAATTTTATTATTCAATAAATTTGAATTAAAAAATTACTTAGGATTTATTTAAATATTGTTTATATTCATCACAAAATTTGAAATACTTAATAAACTAAAATAATGTATCAAGATTCAATTAATTTTTTTTGAAGGGGTGAAACTTAAAATTAAATATTATGATATATTTATATTAAATTTTTATATTTAAATATTCAAAATTTATACTGTCAATTAATATTATTTTTGTCATTTTATATTAAATTAATTTGTATTAATCATTAAGAAAAATGTAAATGATTCTCTTTATCGGTTTAATTTTAAAACTAAAAAACCGGACCAAGTTTATGAGGTATAATTTGCTTGATATATTTTGGAAAAACTATTTATTGTACTTTTTAACCTTTTGTTTATTTAAAAAAAATAATTAAAAATAATAGTGGTTTATCAAAGTACATTAACGTAAAATTATTTTAAAAAATACAGGGGATATATGAAATAAAAAGTAATGATTATAATGATAATCATATATATATATAATATTTATGTTTTATAAGAATGAGTTATTTTTTATTATTTTAATATGAAAAAACATCTTATTTTTAAAGTTAAAGAAAACCATCCTGTAGAGGAGATTTTATGTATGGTTGTGTCTCCATCCAAAACAAAGAAACCTTAAAAAGTAAAAATGTTAGAGACTAATAATA


Gene Sequence:
>Vu_12583(+)
AATGAAAATAATAATTGAAAAGGGTAAAAGCAAGGAAGTGCAAAGGTGTGTGAGAAGAAAGGAGGAATGATGAAGAGAAGAGGTGACTGATATCATTCATTCACTGCAGCAGGAGCAGCACCACCGCAGCAAACACACACCAAAGAAAAAAAGAAAACCTTTCGATCCCAAAAAAGTCATCTTTTTTCCCACCCCACTTTCTCTCTTCCCAAACACCGCCGTATTTCGCTTTCTCCTTTCTTTTATCCCTTCCATGCCATACTCCTCTTCAATTTCCCTTTTTTAATCTTATCTTTCTTCTCTCTAACCCCTTCTTCCATTAAACTGACACATCAAGACCTGTTGCTGTTGGAGAGCAAAAGGGTCTCATTTACTCTCTCTCTTTCTCTCTCTTTCTCTCTCTCACACACAACACACATACTCTTTTTTCTCTTCTGTGATTGCACTCTCTCCGATGGGAGCTCGTTGCTCTAAATTCTCTCTCTGCTGGTGGCCTTCCCACGTCAAATCAAACCTCCATGATTTGTCTGATAATGGTGACTTTCCTTTTCTACTTCACTGGGGACATACTAAAACAAAACCAAGAAGGTATTTTTAATTTGAATGCTAACTTCATCTTTGCTTTTGATTTGTGGGTAAAGATGATGATGGGAAGAGGAATGAGAAGGATCCTTGGGGAGGGTTCAGTGAGTACAGTTTGGATCAGCTGAGAGTTGCCACCTCAGGATTCTCACCAGACAACATTGTCTCGGAACACGGTGAGAAGGCTCCAAATGTTGTCTACAAAGGGAGGCTTGAGGACGATAGGACGGTTGCTGTGAAGCGCTTCAATAAGTCTGCTTGGCCTGATTCTCGACAATTCCTAGTTCGTGCTGCTGCTTCTGCTTCTGGTTTTTGCTTTTTCTTGCGGCGTGTGGTGTGAATGGAATTTTTATGTCTGATTTTGGTCTCTTGTTTGGTTGGACCTTTCAGGAGGAGGCACGTGCTGTGGGGCAACTGAGGAGTGAAAGATTGGCTAACTTGGTTGGGTGTTGCTGTGAGGGAGAAGAGAGATTGCTTGTTGCAGAGTTCATGCCCAATGAAACTCTCTCTAAACACCTTTTTCATTGTGAGTTTTCCATTTATTTTGTTTATGTGCTTTATTTTTATTCTGCAATCAACATAAGATAAGATCTAATGTTGATCTCATTTAGTTAAACCCTTTGTCATTTTCAATATTTTGCTTTAGAAGCTACATCAGGAGTCAAATTTGAGTGATGTGCTCTCTCAAATCTGTCCCCGTGTTTGTTGAAATATCTTTCCCATTTCATGCCCTGATTTTGTGACTTGAATGAACTGGTCTGCAGGGGAAGCCCAGCCTATGAAATGGGCAATGAGGCTGAGGGTGGCCTTGTATTTAGCTCAAGCTTTGGAATACTGCAGCAGTAAAGGAAGGGCATTGTACCATGATCTTAATGCTTATAGAATTTTGTTTGATCAGGTACTTCACCTTTTAACCTCTTTTTGTGCCTCTTTCGTTATGTTTTGACAACTTATGTGGTACCATTGGTGGACAGGAAGGCAACCCTAGACTCTCTTGTTTTGGACTCATGAAAAACAGTAGGGATGGCAGAAGCTATAGTACAAATTTAGCCTTCACACCTCCAGAGTACTTGAGGACAGGTGATATAGCCTTTTCGTTAATATTGTATTATTTGGGGCTAAAGGACCTTTTTTGTTAATTTCGTGCCTTCTGGTTTTTCAAATTTGGCAGGAAGAATCACTGCTGAAAGTGTAGTTTACAGTTTTGGCACCCTATTACTTGATCTTCTCAGTGGAAAGCATATCCCACCGAGTCATGTACATTCCCTCTTTCCCATTTGGTGTTCATTTTAATTTACGGCGGCATTTTTGTTTAGTAAACTTTGACCTTTACAATGTCAGTTCTTTACGGTTGGATTTCACCAGATTTGCAGTAACATCATTGTTGTTTTGGTTTAAAATGATTATATTCTATGTAATGTTTCATAAACAAAGAGGTATAATAACCCCTTTACATGCAGGCACTTGATCTTATACGAGGCAAAAATTTTCTGTTGCTAATGGACTCATGTTTGGAAGGTCATTTTTCAAATGATGATGGAACTGAGTTAGTGAGATTAGCTTCGCGCTGTTTACAGTATGAACCTCGTGAGAGACCAAATGTTAAGTCGCTCGTGACTGCTCTGACCCCTCTTCAGAAAGAAACTTCGGTATGCCCTTCTTTTTCCCTCCTGCTGTTTTTTTTCTTTTCTCAAGTTATTCTATCAATTCAATCAAGGATCAAAGCTTACTTGGCTGATATGTATATATCAATGAAGGCATTTGGAATCGTAGAAACGTACTTGGTTTGAAGCTTGTGGTATTTTGCAGGTACCGTCATATGTTTTAATGGGCATACCAGATAGGAGTCTGTCATCAAAGGAAACAGTTTCATTAACACCTTTTGGTGACGCTTGTTCCAGAAGAGATCTGACTGCAGTACATGAGATTTTGGATAAAGTGGGCTACAAGGATGATGAAGATGTTGCTAATGAGGTAATTCATAGGTTCAATTTCTTTCTCTACTTAGACTTCTAATCAGCGAGTATAGGGGCCTTCCATTTTTGTCTACACAATTTTGAAACTTGCTTGATGCAGATCTAGTTGTTTGACGCTGGTCATGGGTAACTAAAGACATCACGTTGTAAATCTTTCATATCCATGACAGTTTACCTTTTGCATTTCTTCATTCTAATGCCAACTTCTGGTTTTGGTTCTGCTTTTCCAATGCCAGAAACAAATTCTGTAGTATGACAAACAAAGTGTTTTTTGCTAATTCTTTTGTACTTCATAGCAGAACTGGACCTCCCTTGTATAATGAGATTTATGGATTTGTATTTTGTCAACTTTCATGTTGTCACAGCTTTCCTTTCAAATGTGGACAAATCAAATACAAGATACTCTAAATTCTAAGAAGCAAGGCGATTCTGCTTTCCATGCTAGAGACTTCTCTACAGCCATTGACTGCTATACACAAGTAAGTCAGCTTGAAAAATAAGATCTTCAATGCATCCAAACTTAAACACTTTGTAACGTCAGAGTGTCTACCCTTTAACACTGCAAGATTGATAATTACTTTGTTAATGAAGTATTTACTGGCATGTCTACCAACAGTTACTTTTCTAGATTGAATGTTTTGGCTATTACAATTTTGGTAGAATAATACTTGGGGAAATTTAAAATGATACTTTATATCTTCGAAGTTGCAAGAAGAGGGAGGCATTACCCGCAAAGCATTGAAAATGAAGATTCATCTATATAGTTAATGGATATGCATGCCAACTTTCTTTTGCTAGACCGAGTTTCACTGTTCTTGTTTTGTGTGTAGTTCATCGATGGTGGAACCATGGTATCACCTACCGTGTATGCCAGACGCTGCTTATGCTATCTGATGAATGACATGGCTCAAGAGGCACTTGGAGATGCCATGCATGCTCAATCAATATCTCCAACCTGGCCCACTGCATACTATCTTCAAGCAGCTGCTCTCTTCAACCTTGGCATGGACAATGATGCACAGGAAAGTCTTAAAGATGGAACAACACTGGAAACCAGGAAGTATAGAAACTGAAACTGTATAGTCTTTTTCTCTCTTCTACTTCCCCTCATTGATCAAGCGAAATTTTTACATATCACTGTTAGTTGTATGTAATTTATATATGCTTTTTAGACTCCTACGATGACTCTATGGCCTCCCTGCATTCTCTTGTATTTTTGGTCCAATGATGTGAATCTCATTGCTCAGATTCTCATTAAAGATTTCCTATTTCCAACCTAAATACTTAACAAATTCACGAACTAGTAAATATTAGTATTTGATTCACGTCTTC

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