Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12564 LG3 18291996 18294370 PREDICTED: transcription factor PCL1-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of gene expression, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, positive regulation of circadian rhythm, circadian rhythm, circadian rhythm, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   DNA-binding transcription factor activity, DNA-binding transcription factor activity
SNP Position Effect Amino acid change
C/T 18292201 5_prime_UTR_variant
G/T 18292317 synonymous_variant p.Gly2Gly
A/T 18292494 synonymous_variant p.Ser61Ser
G/C 18292590 missense_variant p.Glu93Asp
C/T 18292596 synonymous_variant p.Asp95Asp
G/A 18292692 synonymous_variant p.Glu127Glu
C/T 18292761 synonymous_variant p.Phe150Phe
C/T 18292907 missense_variant p.Ser199Phe
G/A 18293092 missense_variant p.Gly261Ser
C/A 18293106 synonymous_variant p.Ala265Ala
T/A 18293479 downstream_gene_variant
A/T 18293571 downstream_gene_variant
G/T 18293613 downstream_gene_variant
T/C 18293846 downstream_gene_variant
T/A 18293971 3_prime_UTR_variant
A/G 18294052 3_prime_UTR_variant
G/T 18294057 3_prime_UTR_variant
C/A 18294281 3_prime_UTR_variant
A/G 18294290 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12564.1
MGEEVKTGEYDEERVMEWELGLPTANDLTPLSQPLIPPELATAFSICPEPHRTALDVNRASRNTLSTLRGGGSVHQAFSSSNNHQHHEEDEEEEDEDTDRDGSGSDSRKHRKIECVAEEADSAVRTENSAERTAVKRPRLVWTPQLHKRFVDVVAHLGIKNAVPKTIMQLMNVEGLTRENVASHLQKYRLYLKRMQGLSNEGPSSSDQLFASTPVPQSLHDSAPPSAHSHGQSHGHANAHLPVPMMSMPYPPPMMSMLVLGTPHAHGHMGIPMPTSSATSAYHPYNMLHQRDWTHLAPNDK*


CDS Sequence:
>Vu_12564.1
ATGGGGGAAGAGGTGAAGACGGGCGAGTACGACGAAGAGCGGGTCATGGAGTGGGAACTGGGTCTCCCCACCGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATTCCGCCGGAGCTCGCCACAGCATTCAGCATATGTCCGGAGCCCCACCGCACCGCCCTAGACGTCAACCGGGCCTCACGCAACACGCTCTCCACGCTGCGCGGCGGTGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACCACCAACACCACGAGGAGGACGAGGAGGAGGAGGACGAGGACACCGATCGCGACGGCTCGGGGTCGGATTCTCGGAAGCATCGGAAGATCGAGTGCGTGGCGGAGGAGGCGGACTCGGCGGTGCGGACGGAGAACTCGGCGGAGCGGACAGCAGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTCGACGTGGTGGCTCACCTTGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAGTTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTGGCGAGTCATCTTCAGAAGTATCGGCTTTACCTGAAGCGGATGCAGGGTCTCTCCAACGAAGGTCCTTCTTCATCGGATCAGTTATTCGCTTCCACACCCGTGCCTCAGAGTTTGCACGACTCTGCTCCTCCCAGTGCCCATTCCCATGGTCAATCCCATGGCCATGCCAATGCTCATCTTCCTGTTCCCATGATGTCCATGCCCTATCCCCCTCCCATGATGTCCATGCTTGTCCTCGGCACGCCCCATGCCCATGGCCACATGGGAATCCCTATGCCTACTTCATCCGCCACCTCAGCTTACCATCCTTACAACATGCTGCACCAAAGGGATTGGACTCACCTTGCTCCCAATGATAAATGA


Promoter Sequence:
>Vu_12564::LG3:18289996-18291996(+)
GTAATTTACTTTGTATGTTAAATATTTATTGAAAGCCCTTGTTATCATGTTGAGGAGACACATTATTTGTTAAAATCCTAGGCAGTTACTATATAATTTAAATACGTTGATTAATATTTAAATTTGTTTTGGTAGATATTTTGTTGGTAGATATTTTGTGGTGAATTTGAAGAATTTTGGTTCTTAGTTGAATATTTAGTTAATAATTATCACTATTGAGTATTTAGAAGTGTGAGTCGGAACATACTTGGCTTTCGGTTTTGTATTTATAATTTACCTGATGGATCCTGAGCTGATACAAGTCCAATAAAATATAAACAGAATAAAATATAAATAGATTATCTGAAAATCCGGTTGGTTGTTTATAACCTGCTTTATCAATATCTTTAATTAGATATTCTTTGATTATTTTATCATCTACTAGACTGTTGATCTAACAATAGCTTAAGTACTGACCCAATTACGACCCAATCTTTGAACTGAGTAGATGGACCGAACGATGCTGATTGTTAATCGTTCGACCTTTACTAGGTACTATACTAAACTTAAGTGGTTAGTAGTTTAATTAAGAGCCTAAGGTTAATTTTGTTATACTATCTTCAAAATATTTGGAAATTTAATACATAAAAATATAAATTAGTCTGCTTTATTTATTAAAATACTAATATACACCAAAAGAAACTCAAAATTTTCTAAATTCTACTTTCACAGTACCGTGATATAAACTTGTATTTATGGAATATCATATTAGTTTATAATTATTTATTTATTTATTTCAACAGTATCTTTTTCTATTGAACGTAAAAGGCGACTGTTAGAACGTGAGTAATGAAATTTTACAATGATGTAAAAAAATAAAATCTTAAAAAAGGCAAATTAAAAATTAATGTAATAATCTTTATATTGAAGAACAGCCAAAAAGTAAAATACTCTTTCAATGAGACCTCTGGAGATTATTTTATACCGCAGTTGTGTTTTCTTAATTTCCGTCACTTCAAATTTATAGTTAATGTCGGTTTCTTGTTATCGTCACTATATTTAAGGTTGTGGATAAGCCAACCGTCCATCTCATCATGCCTAAACTTTAATTAGTGTATTAGGTCTAATTTTATTTTAGCTTTATACTTTAGATAAATGTTAATAAATACTTTTATTAGAATCAAAAGATAATTTTAAAGTTTGAAGTAAATAAGTAAATATTTTGCAGAAAAAAAGTCAATATATTTATAATATAAAAAACAGATTGTCATTGAATATATAAATTTTTTAAGGAAAAAACTTGTCATAATAATAATAATAATTAAAATATACACTACACTACACTTCTATTTATTTTGAAATCTAATATTTATAACTTTTAGGATTTGGATTTACATTAAATACGCCTTGCCATTTCAAACTCTTGCACGTAAAGTTAAACTACGTGCGTGATTTAATTTATTCTTAACCCCATTAAATTACGATTAACGGAATCAAAAACTATATAAAGTTACAATTTTAAAGATAAATTCAAGTTATAATTATGTTGTAAACGAAGATGAAGGATGAATTGTAGTTTATATTATATTAATTTTTTCAATTAACACATTCGTATTGATGTGTATAACTTTGTTAAGTACAATGCCTTCAAATACGGGAGAAATGAAGAATATTTATTTATTTATTTATTTATATATGACGTGGGCTGTGAGTGGTGGCAATGGCAGCACGAGGAGGAGGGCACTTTGGTGAAGGCGGAGGCACGTGTGTGTGGTTTCATTTGTGTGGTTTCATTTGAAGCGAGGTTAAATTTTAATTATGTACAAATAATAATAAATAAATAAAAAGAGAAGAAAGGAGGAGAGATAGATATTTAGAGGATCAAAAATATCTGGCTAAGTCGTCCACGTTGGCATCAACCCAACACCCATCTGGAATAAGATATTGCACTTTTTCTCTCCTTTTCACAATTTTTCTGAAATTAAAATTCATAAAAAATATAAGCAGCATTATTTCATTCA


Gene Sequence:
>Vu_12564(+)
ATCTATATCATTATTTATTCATTATCCCTCTTCCTCCTCCCCTTCACTTTCTCTGTCGCCACCACACACGGCCGAATCTGCCAAATATCTTCACCACACAGTTGCAACTAATTTTCGTTTTCCTTTTCGGGAATCTTCTATCTTCTGTCTATTATCTAATTCTATCTTCTCAAATTTTTACTCTTCGGATCTAAATCCAATACACCTTTTTGGGTTTTCAGAGAGAGATATTTATATATCTGTGTTTGTGTTTGGGTCGGGGACATAGAGTGTGTCAGAAGCGGTTAAATTTGTTTTGACAGTTACAACTAACTGAATGGGGGAAGAGGTGAAGACGGGCGAGTACGACGAAGAGCGGGTCATGGAGTGGGAACTGGGTCTCCCCACCGCCAACGATCTCACGCCTCTCTCTCAGCCGCTGATTCCGCCGGAGCTCGCCACAGCATTCAGCATATGTCCGGAGCCCCACCGCACCGCCCTAGACGTCAACCGGGCCTCACGCAACACGCTCTCCACGCTGCGCGGCGGTGGGAGCGTGCACCAGGCCTTCTCCTCCTCCAACAACCACCAACACCACGAGGAGGACGAGGAGGAGGAGGACGAGGACACCGATCGCGACGGCTCGGGGTCGGATTCTCGGAAGCATCGGAAGATCGAGTGCGTGGCGGAGGAGGCGGACTCGGCGGTGCGGACGGAGAACTCGGCGGAGCGGACAGCAGTGAAGCGGCCGCGGCTGGTGTGGACCCCGCAGCTGCACAAGCGGTTCGTCGACGTGGTGGCTCACCTTGGGATCAAGAACGCGGTGCCGAAGACGATTATGCAGTTGATGAACGTGGAAGGGTTGACCCGCGAGAATGTGGCGAGTCATCTTCAGAAGTATCGGCTTTACCTGAAGCGGATGCAGGGTCTCTCCAACGAAGGTCCTTCTTCATCGGATCAGTTATTCGCTTCCACACCCGTGCCTCAGAGTTTGCACGACTCTGCTCCTCCCAGTGCCCATTCCCATGGTCAATCCCATGGCCATGCCAATGCTCATCTTCCTGTTCCCATGATGTCCATGCCCTATCCCCCTCCCATGATGTCCATGCTTGTCCTCGGCACGCCCCATGCCCATGGCCACATGGGAATCCCTATGCCTACTTCATCCGCCACCTCAGCTTACCATCCTTACAACATGCTGCACCAAAGGGATTGGACTCACCTTGCTCCCAATGATAAATGAGCCTCTAAGGTCAGCTATCACTGATTGAAATTTCAACACTCTTTATGGAACATGTTATGTGTTTAACTTGCATCTTGCTTGAGAGTAAATTGAATGCTCTGTTTTCTACGTGGCTTGTTAATTGTGTTAGAACTTAGCAATACGTGCGTTTGTTTGTGTTCTCCTCTGGAGGTACTGAATCTTTATTACATCAACTTCAAATCAAATGATTAATCGATGGCTCTCCCTCCATGGAGAAATTATTTTGTGATCTTGTACTACTTGCTGGAGAAATTATTACATGATCTAAGACTACTATGATCTTTAAATGATCTGCACATGGTTAAGTTTATTTGCTCTTTTTCATTAATTGAAATATTCAGTTACCTGTCACGTAGAGATTATGTGAAATCACAGAATGTAGTAGTTCTGGTTCATGTAATAATTTGTCCTCACAAACTGGCCATGAGTCTCGAATTTGTTGAAATGTGAACTAGCTTTATGGTGTTTGAACTTATTTTTAAGGGTAGAAATATGTACTGTGATGTGGGAAGTATATTTCGTTGGATCTTCCTGTAATACTTTCTTTTTCGTTTAGGATGTTTGATGTGCATATCTTCATTTCAATTTATATTGCACTGCTAGATTCTACGACATTATCAGTTGGTGGTGGTGGTGAATGGTTGTATTTTTAATACCATCAAATTTGCTTTTATGGCCATGAAATATACTTATGAATTTTCTTTTTGTAGATTGAACCGCTTGATTTTTTTCTAGTAGCTTTCCGAGAAGGAGAATAGCTGCATTGACTGTTACCCTGTAATTCATACAAATGGAATATTGAGGAAGTATATGAAGAAGACCATGTGGAGCTAGATTACAATCTGATTCAGTATTGTGTACCCTGTGCACAGATTTGCAAACTTCTTGGCACGCATATCTAATTCCTGTCACCTAATTACGAGAATTCTGGCTTATTTCTTCTGGTCTGCCTAGACAGCTGTTTCTAAAGTAAATTCTTAACTAGTTCTTGATTCATAAATTATAGGTTCTATTATTGTGTAATCCTGAATGTTTTAAATCTCTTTTTCAGAACCACTGAATAAAAGAGACTGAACAACAGACAGCAAACATTTATACCATGCTCTGGCATTAAATGTTTTTGCTTTATCTT