Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12545 LG3 17972175 17975024 PREDICTED: scarecrow-like protein 34
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   nucleus
Molecular Function   enables   DNA-binding transcription factor activity, sequence-specific DNA binding
SNP Position Effect Amino acid change
G/T 17972181 5_prime_UTR_variant
T/A 17972403 5_prime_UTR_variant
C/A 17972565 stop_gained p.Ser39*
A/T 17972568 missense_variant p.Glu40Val
A/C 17972607 missense_variant p.Asn53Thr
A/T 17973051 missense_variant p.Asn201Ile
G/T 17973272 missense_variant p.Gly275Trp
G/A 17973282 missense_variant p.Arg278Gln
G/A 17973297 missense_variant p.Gly283Glu
G/T 17973307 missense_variant p.Lys286Asn
G/C 17973308 missense_variant p.Glu287Gln
G/A 17973397 synonymous_variant p.Gln316Gln
T/C 17973517 synonymous_variant p.Phe356Phe
C/T 17973518 synonymous_variant p.Leu357Leu
G/A 17973520 synonymous_variant p.Leu357Leu
C/T 17973527 stop_gained p.Gln360*
G/A 17973542 missense_variant p.Ala365Thr
C/T 17973558 missense_variant p.Ala370Val
C/A 17973572 missense_variant p.Leu375Ile
T/C 17973578 missense_variant p.Ser377Pro
C/T 17973580 synonymous_variant p.Ser377Ser
T/C 17973586 synonymous_variant p.Pro379Pro
C/G 17973616 missense_variant p.Asn389Lys
C/T 17973639 missense_variant p.Ala397Val
G/A 17973647 missense_variant p.Glu400Lys
C/T 17973652 synonymous_variant p.Thr401Thr
C/A 17973661 synonymous_variant p.Ile404Ile
G/A 17973679 synonymous_variant p.Leu410Leu
T/C 17973688 synonymous_variant p.Phe413Phe
C/T 17973689 stop_gained p.Gln414*
C/G 17973739 synonymous_variant p.Pro430Pro
G/T 17973755 missense_variant p.Gly436Trp
A/T 17973772 missense_variant p.Gln441His
C/A 17973778 synonymous_variant p.Gly443Gly
C/T 17973789 missense_variant p.Ser447Phe
C/T 17973836 missense_variant p.Arg463Cys
T/G 17974008 missense_variant p.Val520Gly
C/A 17974009 synonymous_variant p.Val520Val
T/A 17974852 3_prime_UTR_variant
G/A 17974855 3_prime_UTR_variant
T/C 17974866 3_prime_UTR_variant
T/A 17974869 3_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12545.1
MEPNFLSDDLFDESESISYLSESLGFARMDPPPEDNDFSETVKFISQILMEENVQLQNPFYDSLTLQVTEKSFYDTLVGNLSPNQHALVLSPQAETTTTTTNNNNSSFLDEYFPSPDSASASASALQFNPHTLSQPPSFTVCHGFSDLDSSIAKILAQNMFNDADSVSQFRRGLEEATKFLPFGPELVTGLHSNGEEQINNFGVNFKSRKNHERQERDTTEEEEGRSSKQSTLSLVDESDISDAIDRVFLSVENVGSEHNSLQSGAVKGEERDGGKDRSKKKGRKKETVDLRNLLQMCAQSVYANDIRAATELLKQIRQHSSPFGDASQRLAHYFANGLDARLVGAGSGGHEQFSFLNSQRITAAEYLKAYQVFLSSTPFKKFTYFFANTMIMEAAAKSETVHIIDFGILYGFQWPILIKFLSNREGGPPKLRITGIEFPQPGFRPSERIEETGHRLANYCKRYNVPFEYHAIASRNWETIQVEALKIESNEIVAVNCHMRFEHLLDESTVEVNSPRNAVLHLIRKINPDIFTQIIVNGSYSSPFFTTRFKEALFHFSAVYDLFDTVIPRENDWRMTIERELLGREAMNVIACEGSDRVQRPETYKQWQVRNTRAGFKQLPLKEELMAKFRTKLKDYHRDFVFDEDNNWMIQGWKGRIFNASTCWVPT*


CDS Sequence:
>Vu_12545.1
ATGGAGCCCAACTTTCTCAGCGATGACCTGTTTGATGAATCGGAGAGCATATCATACCTCTCAGAATCACTTGGTTTTGCTAGAATGGATCCTCCACCGGAAGACAACGACTTCTCAGAAACCGTCAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTTCAGCTACAGAATCCATTCTATGATTCACTCACCTTGCAGGTTACCGAGAAGTCCTTCTATGATACTCTAGTGGGTAACCTTTCCCCTAATCAACACGCCCTTGTTCTCAGCCCCCAAGCTGAAACCACCACCACCACCACCAATAACAACAACAGCAGCTTTTTAGATGAATATTTCCCTTCTCCGGATTCTGCTTCTGCTTCTGCTTCTGCTCTTCAGTTTAACCCCCACACCCTTTCTCAGCCACCTTCATTTACTGTTTGTCATGGATTCTCAGATTTGGATTCTTCTATCGCAAAAATCTTGGCACAGAATATGTTCAATGATGCTGATTCTGTTTCCCAGTTCAGGAGAGGATTAGAGGAAGCTACCAAGTTTCTTCCTTTTGGCCCTGAGCTTGTAACTGGTCTCCATTCAAACGGTGAGGAACAGATCAATAATTTTGGAGTTAATTTCAAGAGCAGAAAGAATCACGAGCGTCAAGAGAGAGATACCACAGAAGAAGAAGAAGGGAGAAGTAGTAAGCAATCGACACTTAGCCTTGTTGATGAGAGTGACATTTCAGATGCTATAGATCGGGTGTTTCTGAGTGTGGAAAACGTGGGTAGTGAACACAATTCCTTGCAGAGTGGAGCAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAAAGGGAGGAAGAAGGAAACTGTGGATTTGAGGAATCTTCTACAGATGTGTGCACAATCTGTGTATGCCAATGACATTAGAGCTGCCACCGAATTACTAAAGCAGATTCGGCAACACTCTTCTCCCTTTGGAGATGCATCGCAGAGGCTAGCTCACTACTTCGCCAATGGTCTTGATGCACGCTTGGTTGGGGCTGGTTCTGGCGGTCATGAACAATTTTCTTTTCTGAACTCTCAGAGGATTACTGCTGCAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACCCCTTTCAAAAAGTTTACATATTTCTTTGCAAACACAATGATTATGGAAGCTGCTGCAAAATCAGAAACCGTCCATATCATTGATTTTGGCATCCTGTATGGTTTTCAGTGGCCAATTCTTATAAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGCTTTCGTCCCTCTGAAAGGATTGAGGAGACGGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAATACCATGCCATAGCATCAAGGAACTGGGAAACTATTCAGGTGGAAGCCCTTAAAATTGAGAGCAATGAGATAGTTGCTGTCAACTGTCACATGAGGTTTGAACATTTACTGGATGAGAGCACTGTTGAAGTTAACAGTCCTAGAAATGCAGTCCTGCATTTGATCAGGAAGATAAATCCGGATATCTTTACTCAGATCATTGTTAATGGATCATATAGTTCCCCTTTCTTTACCACACGGTTTAAGGAGGCACTGTTCCATTTTTCTGCTGTTTATGATCTGTTTGACACTGTCATACCTCGTGAAAACGATTGGAGAATGACGATTGAGAGAGAGCTTTTGGGTCGGGAGGCTATGAATGTTATAGCGTGTGAAGGTTCTGACAGGGTTCAGAGACCTGAGACATACAAACAATGGCAAGTTAGGAATACAAGGGCCGGTTTCAAGCAGCTTCCATTGAAGGAGGAATTGATGGCCAAATTTAGGACTAAGTTAAAGGATTATCACAGAGATTTTGTCTTCGATGAAGATAACAATTGGATGATTCAAGGTTGGAAAGGCCGCATTTTTAATGCTTCCACTTGTTGGGTGCCCACATAA


Promoter Sequence:
>Vu_12545::LG3:17970175-17972175(+)
CAAGCTAGGATCTTCCTTTCTTGATTTAGGCATTGCTAAACACAATTTTAATGAATATAATTGGTTATAAATGCTCTGTATACATGTTTCAATATTGAACTGTGAAACTTTATTTGCAGACTTTATGTTGATGAAAATAATTATAACATCAATAAATTATTATTCAAGGTCAACGATATTTACTGCACTCTATTTAGAACAAAATTTATATATACTTTTGTATGTTTTCAAAATTGAAATAAATGTTACTAATTTGTAACATTTTAAAGAAAGTTGAAAATACAATGCAAAACAAGGCTTCACTTAACTCAGTCAGTAAAAATATGAACGCATTTTTTATGCTATTAATTAATCATAATATTACCTCGGAACTTTTAATTGTTTTAGAATCAAACTAGTACTATTTATAAATTTTATTACCAAACAGATTGATTGGGTAAATAAATTTTGAAGATTATTTTAGGTTGTGTAAAGATATATATATTATATATGTAAAAATCGAGATAACTTAAATAATAATATACATCTCTAGAAAAATATTATATACTAATGAATTTGTACAAAGAAATTCAAGTTTTAGATTGTATTTATAGAGAATAAAATTTTCGATAAAAAAATTAAGATTGGTAAAGGTTGATAAATTCAAACTCTAATTTTATTCTGTATAAGGTTTCCAGATTTGTTCTATTTTTCTTTAATTTAATTTTTACCTTTTTTACTATGATTATCTTTTCTTTATAATTAAATATTTGTTTTTACGATGTTTATATTATAAAATGTATTCATAATAGAAGTTAACTTGTGATAAAGTACATGTGTAAACATGGGCATATTAATAATTGTTTAGCATCACAAACTTTTACTGTTTCAAAAATGTTTTTTCATTAAATTTTAAAAACAAAATAATAAAAGGCATCCCAGAAAAATGAAACAAAAATCAAAATAATAACATTTTCTTAGCAGATTTTTATTCAACCACATTCTTTAAAAATTGTTGTTATTTAATTTTTTTTTCCGGTAACACGTTAGCACTTTGAAGGAAATTTTTTATATTGACAGCATTTACCAAAATCGAATTGGTATAATGCATAAAAAATAAATTTTGATGATTAAATATTCATAGTTAAGTGAAAATATACACATCCAGGGTTTAGTTAGATATCAATATTGCTGATCAAATTAGTTACATATTTTATCACTTAACTATCAATATTAAAAATTCAATTTAGTGACAGGAAAAATTCAATTTTTAAAAACATTAGACTAATGCTAGGTGCCCAAAATTACACATCCAGCATTCAAAAGAATATAATATATATATATATATATATATATATATATATATATATATATGTATATATATATATACATATATGTATATATGTATATGTATGTATACATATATGTATATATGTATATATATGTATATATGTATATGTATGTATATATGTATATGTATGTATATATGTATATGTATGTATATATGTATATGTATGTATGTATATTTTCTGCAGATAATTTGATTTCAGAATATACTATAATCTAATGGATTTACTTGTAAAAGGAGTGTGAGTTTGTTTGTTTGCCTGCAATGTTATAAAGTTGTATATGAAATATAACATGATTAAAGTTATATTGTTCTGATTAAATTGTGATTGTTTTTTCATATTGCAATGTTTGTTGTTTGATTCTGGCTCTGTCTTGCACATGTCTATCAATCAATGATGGTGAGTCTTCAAGATAAAAGAGCCAAAAGTGCTACTGCTTACTTAACAACCTGCTACTTAATATGTTGATTCCAAGAATATTGTGAAACCTGCATTAGGCTCATGAGCTGGTGTTAGCAGCTATAATGAGCTGGTGTTAGCAGCTATAACGGTACCATTTTAGAGTATACATTCTTCCCCATTCTAGATAACTTTCAAGAATTAGCATCGTACATGAGTTTCTAGGATTGGCCCTTCTACAACATCTACTCATGAAAATAGAAAGTATTTTGA


Gene Sequence:
>Vu_12545(+)
ACAACAGTATCAAAAAATCTAGCTATGACTGGTCATGCTCATGACCATGATAGTCAAACTTCAAAGGGCTGCTGCATATGGTTCTGTTTGGAGCTTTGTGACTGTTAACACAACCTCACCATCCCCCCATGGCCTTCCGTCACACCCAATTCTTCATATTTAGTTTTCTAAACCATAAAATCCTCATCGTTTCATCATGTTCTGTGAATTGTATGAATGAATTCCCCCTTTTTCTTTCTTCTTTCTCTTTCTGAGCACTGCAAAAAGCCTCAACGATGGAGCCCAACTTTCTCAGCGATGACCTGTTTGATGAATCGGAGAGCATATCATACCTCTCAGAATCACTTGGTTTTGCTAGAATGGATCCTCCACCGGAAGACAACGACTTCTCAGAAACCGTCAAGTTCATAAGCCAGATCCTCATGGAAGAGAACGTTCAGCTACAGAATCCATTCTATGATTCACTCACCTTGCAGGTTACCGAGAAGTCCTTCTATGATACTCTAGTGGGTAACCTTTCCCCTAATCAACACGCCCTTGTTCTCAGCCCCCAAGCTGAAACCACCACCACCACCACCAATAACAACAACAGCAGCTTTTTAGATGAATATTTCCCTTCTCCGGATTCTGCTTCTGCTTCTGCTTCTGCTCTTCAGTTTAACCCCCACACCCTTTCTCAGCCACCTTCATTTACTGTTTGTCATGGATTCTCAGATTTGGATTCTTCTATCGCAAAAATCTTGGCACAGAATATGTTCAATGATGCTGATTCTGTTTCCCAGTTCAGGAGAGGATTAGAGGAAGCTACCAAGTTTCTTCCTTTTGGCCCTGAGCTTGTAACTGGTCTCCATTCAAACGGTGAGGAACAGATCAATAATTTTGGAGTTAATTTCAAGAGCAGAAAGAATCACGAGCGTCAAGAGAGAGATACCACAGAAGAAGAAGAAGGGAGAAGTAGTAAGCAATCGACACTTAGCCTTGTTGATGAGAGTGACATTTCAGATGCTATAGATCGGGTGTTTCTGAGTGTGGAAAACGTGGGTAGTGAACACAATTCCTTGCAGAGTGGAGCAGTGAAAGGTGAGGAGCGAGATGGAGGGAAGGACCGATCAAAGAAAAAAGGGAGGAAGAAGGAAACTGTGGATTTGAGGAATCTTCTACAGATGTGTGCACAATCTGTGTATGCCAATGACATTAGAGCTGCCACCGAATTACTAAAGCAGATTCGGCAACACTCTTCTCCCTTTGGAGATGCATCGCAGAGGCTAGCTCACTACTTCGCCAATGGTCTTGATGCACGCTTGGTTGGGGCTGGTTCTGGCGGTCATGAACAATTTTCTTTTCTGAACTCTCAGAGGATTACTGCTGCAGAGTACCTGAAGGCATATCAAGTGTTTCTATCTTCCACCCCTTTCAAAAAGTTTACATATTTCTTTGCAAACACAATGATTATGGAAGCTGCTGCAAAATCAGAAACCGTCCATATCATTGATTTTGGCATCCTGTATGGTTTTCAGTGGCCAATTCTTATAAAGTTTTTATCAAACAGAGAGGGTGGTCCTCCCAAGCTGAGGATCACAGGGATAGAGTTTCCCCAACCAGGCTTTCGTCCCTCTGAAAGGATTGAGGAGACGGGTCACCGTCTTGCTAACTATTGTAAGCGTTACAATGTTCCCTTTGAATACCATGCCATAGCATCAAGGAACTGGGAAACTATTCAGGTGGAAGCCCTTAAAATTGAGAGCAATGAGATAGTTGCTGTCAACTGTCACATGAGGTTTGAACATTTACTGGATGAGAGCACTGTTGAAGTTAACAGTCCTAGAAATGCAGTCCTGCATTTGATCAGGAAGATAAATCCGGATATCTTTACTCAGATCATTGTTAATGGATCATATAGTTCCCCTTTCTTTACCACACGGTTTAAGGAGGCACTGTTCCATTTTTCTGCTGTTTATGATCTGTTTGACACTGTCATACCTCGTGAAAACGATTGGAGAATGACGATTGAGAGAGAGCTTTTGGGTCGGGAGGCTATGAATGTTATAGCGTGTGAAGGTTCTGACAGGGTTCAGAGACCTGAGACATACAAACAATGGCAAGTTAGGAATACAAGGGCCGGTTTCAAGCAGCTTCCATTGAAGGAGGAATTGATGGCCAAATTTAGGACTAAGTTAAAGGATTATCACAGAGATTTTGTCTTCGATGAAGATAACAATTGGATGATTCAAGGTTGGAAAGGCCGCATTTTTAATGCTTCCACTTGTTGGGTGCCCACATAATTTCTGGACTTGGTGTAGAACTCATACTAATATGATTCTAATGTTGAAGCTTTGATTTATAATCGTGCTAACAAATCATGGTTATTTGAGATATTTAAGCAGGAATGGTTCAATGTTGAAGCTTATTTTGCTCGTTGAATAAAAAGTTGCTGTGATGAAGATTGCACCAAGCTTTGCACAAGTTACTTGGTAAATTCATGTTACCAATTTATTGGTAAATCCAATGAACTTTTAAATTTAACTCAATTTTATATATACAGATTGTGATTAAGGTAAGTTTTGAACCAATTTTCTTGTTTACACACAAGACAATTCTGACCATCCAATGAACTTTTAATAATTGTATTGCTAGCATAGTACAACAATACATAATCTAAGATAGCTGCTACTGCTACTTTGCTATATATAGTAATGTAAACTCAGCTTCTTTTTCCCTTTTCGAGCCATTGTATCCTATTCTTTCCACACATCTCATTCTTCATAGATACTCCACTCATTCATCCAAGTGAAAGCCAAAAAGTGGGTTATTCTGAATTTTTATTATATAAAATACTGTGTATATCTTGTG