Genomic Resources - Ricebean Portal

Integrated genomic strategy for accelerating domestication of
ricebean (Vigna umbellata) under genetic enhancement of minor pulse

Gene Details:

Gene ID	Chr. No.	Start Position	End Position	Function	View on
Vu_12510	LG3	17679025	17679456	hypothetical protein PHAVU_011G066800g	Map

Annotations

category	relationship type	keyword
Biological Process	involved in	regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component	located in	nucleus
Molecular Function	enables	DNA-binding transcription factor activity

SNP	Position	Effect	Amino acid change
C/A	17679085	missense_variant	p.Leu21Ile
G/A	17679126	synonymous_variant	p.Gln34Gln
T/C	17679303	synonymous_variant	p.Ser93Ser
C/T	17679320	missense_variant	p.Ser99Leu
G/T	17679342	missense_variant	p.Leu106Phe
C/T	17679343	missense_variant	p.Pro107Ser

View accession wise SNPs

Sequence Details:

Protein Sequence:
>Vu_12510.1

MTNCLMLQAKVEEDPLREKVLKSGEFKCKTCNKQFLSFQALGGHRASHKNLNRMASNLSSSMVTPRLHQCSICGLVFGLGQALGGHMRKHRVSSNDALSTIHDQDLPESNVTKKLRLWLDLNLTPYENYLTLNSMTPVLHLFL*

CDS Sequence:
>Vu_12510.1

ATGACTAATTGTTTGATGTTACAAGCCAAAGTTGAGGAAGATCCACTAAGAGAGAAGGTTCTAAAGAGTGGTGAATTTAAGTGTAAGACATGTAACAAGCAGTTCCTTTCGTTTCAAGCCCTTGGAGGCCACCGAGCTAGCCACAAGAACCTAAACCGAATGGCTTCAAACCTTTCGAGTTCGATGGTGACGCCAAGATTGCACCAATGCTCAATTTGTGGACTTGTGTTTGGTCTTGGACAAGCTTTGGGAGGACATATGAGAAAGCATAGAGTTTCTTCAAATGATGCCTTGTCAACTATTCATGACCAAGATTTGCCAGAATCTAATGTCACTAAAAAGCTTCGTTTGTGGTTGGACTTGAACTTGACACCGTACGAGAATTATCTTACCCTCAATTCAATGACACCTGTTTTACATTTGTTCTTGTGA

Promoter Sequence:
>Vu_12510::LG3:17677025-17679025(+)

TCACAAAATTGACCAGAATTTAATATACTCACGTTTACAAAGCAGTCATGGAAATGCAACCATGTAGGATAAAATTGGTCACATGAAAGTAAAAGTACTTCTAGCTTGTCTTTTCATGTTAAAGCTGATGTATGTTATGTACGTAATTTCCTTTTTCCTTTCGGCCATGATTAAATGAATGGGTTCCTTGCAGTAAAAGACTTGTTTACACGTAATTTCCCATTTGCAGTTTGATAAGGTACTGGTTGAATCACACTCAGAGGTTCATTTTCAATGTAAATTGGACCATGCTTGTTCCATGACCTGCCTAAATCTGGTGTTACCTATTGCACACAATAAGCAATAAATGTCAACATGCTACCATTTCTAACCATCACTGAAGCGAACCGCTCAACTAGGATGAGTTCAGTTAACACCTCTACCCAGGCGTCCCAGGAATTCCAGTTTTCAATAGATGATCCACAAATTAAATTACCATTTTCAAGTACCATTTTCAAGCATAATAGGTTGAGAAATAGTAAGGAAAATCAATAGTAAAGTATAAATTTAATATATGAATTTTGAACTGCCATTGAAAAAATTCAGTGAAACAGAGAAGTAAATTAAGAAGAAAAAAGCTAAAAATTGTTTTTAGCTGAAGGATGAAGAATCCAATTAAGTAGAAATAGAAGCTTGATTTTGGTGTTGCAAAGTAATCAATCAAAGGGAAATGCTTGTCTGTGCAGCGAGCGTAGGTGTGACTCACACTCCTCCAATTCAGTCAGCCTCCCTATCACGCACAACGACAACCCTACCTCCGATTCTGATGACGCCTTCTGCCTCATCGTGCCTTCTGTCGCCGCTGTTGCCTTCGCCATTCGCAAGGCCTCCACCTTCCCCTTCCAGTTCATCCAGACCCTCCAGATCGATCGCCAAACCGGACTCGTGCTTCCCAGCACTGACTTCCATCGACTCTGTCTCCACCAGCTTCACCTCTTTTGCAGGATCGTTCCCGAACCCCTACTCTCGATTTGCGTCTCAGCGGCAATGTCTCTTCGGCGACGAGGGTTTTCGTCCTCCGGCGTATCACGGTGCGAGGCTCTCAGTTTCGATTGGGGATCTTTGGGATTGTTCATCTAAGCTTCTCTGCAGGTTAGGGATCTGATACTGGATGGTCCACTGTTGTGTTTGGATGATGCAAGGATTGATCGTAAACTGTGGTTGAAGAGATGGTGAAAATGGTGACCGCTAGCGGTGGCGGCCATGGTGGACCCTAATATGAAGATAAGTAAAACCCTTTTGTCATGTTATAATGTTTTAAATTAAATAAAATTTCTACATAATCAAATATTTGACATAAGCGTGTAACATGTCATCCGCTATTAACGATGTTTGTGAAGATTTAACGGACAGGATTTAATTGACTAAATTTTTCAAATATTTGAACCAATATTTTATAAATATTAAGATTTAATTGAGACAATTACCAATATGAGGAGTCATTTGATATTCTCGTATAAATAAGAGGATTTAAAAAAAATGGTGGAAAATGTGGAATCAACTTGCATAGGGAAGAAACATGGTTTCCATAAGTTCCTCCACTTTTTTTCCCATTTTCTCTTTAAGCCAACTTTACTCACTTTTTAGCCTCCATTGCCGTTGCAATAAATTACTTAATTTATTTATATTTATATTAAGTAATTCAAATATATGGATAGTCTAATTTCGTTTTCCACCAAACATTATTTCTTGGAAATGCTGCAATAGAAAAACTGTGGGAATATCATTTTCTTTTATTTCATCTGATTCATAACTTTCCTGTCTTTGACTAGGAGTTTCAGTCCGAATCTTAAACAAAACAAAGTGCATCAATTCGTGTCACCTCGTGTTTCGACCAACATTCACGATTAACACACAATATATTGTTCATTTCCTTCATCACAAAGACACTATATATACACTGTTCAATGCCCTTAAGGTCCAAAATATTTTCTCATTTAACAACATTTTTCTCTCAACCA

Gene Sequence:

>Vu_12510(+)