Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12507 LG3 17659589 17660624 PREDICTED: transcription factor MYB59-like
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   is active in   nucleus
Cellular Component   located in   cytosol, nucleus, nucleus, nucleus, nucleus, nucleus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, sequence-specific DNA binding, sequence-specific DNA binding, transcription cis-regulatory region binding, DNA-binding transcription factor activity
Pathway   B 09182 Protein families: genetic information processing   C 03000 Transcription factors [BR:ko03000]
SNP Position Effect Amino acid change
C/A 17659611 stop_gained p.Gly250*
A/G 17659766 missense_variant p.Val198Ala
T/C 17660006 missense_variant p.His118Arg
T/A 17660242 upstream_gene_variant
T/C 17660274 upstream_gene_variant
G/C 17660381 missense_variant p.Pro54Ala
T/A 17660382 missense_variant p.Leu53Phe
C/T 17660394 synonymous_variant p.Thr49Thr
T/C 17660617 missense_variant p.Gln3Arg

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12507.1
MVQEEMRRGPWTEEEDLKLVYFVNMFGDRRWDFIAKVSGLNRTGKSCRLRWVNYLHPDLKRGKLTSQEEHLVMELHSKWGNRWSRIARKLPGRTDNEIKNFWRTFMRKKKALEKKRASPSSSSSSSSLSSINHAVDSHASKEVGEESFYDTGGYGYDDVTGLISAGEEFSLDDIWKDIVLSEDDTIQQQPLYELQSQEGCNFSSPPAMIYSPSSWEYNSSHPLWVMDEEESSKMLFPASSDQYYYSCYEQGNAFLTG*


CDS Sequence:
>Vu_12507.1
ATGGTTCAGGAAGAAATGAGAAGGGGTCCGTGGACAGAAGAGGAGGACTTGAAACTGGTGTATTTTGTAAACATGTTTGGAGATCGTAGGTGGGACTTTATAGCAAAGGTATCAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCACCCTGATCTCAAACGAGGGAAGCTGACATCCCAAGAAGAACACCTCGTCATGGAGCTTCATTCCAAATGGGGAAATAGATGGTCAAGAATTGCTCGGAAGCTACCAGGCCGTACTGACAACGAGATTAAGAATTTCTGGAGGACTTTCATGAGGAAAAAGAAGGCTCTAGAGAAAAAACGAGCATCGCCATCCTCCTCCTCGTCATCATCTTCACTGTCCTCAATCAACCATGCTGTGGATTCACATGCTTCCAAAGAGGTTGGAGAGGAGAGCTTTTACGACACAGGTGGATATGGATACGATGATGTAACAGGGTTGATCAGTGCTGGAGAAGAGTTCTCTTTGGATGATATATGGAAAGATATTGTTTTGTCAGAAGATGATACTATTCAGCAACAACCTCTGTACGAATTGCAGAGTCAAGAGGGTTGCAACTTCTCTTCTCCACCTGCAATGATTTATTCTCCATCATCATGGGAGTACAATTCTTCTCACCCCTTATGGGTGATGGATGAAGAAGAAAGTAGCAAGATGTTGTTTCCTGCATCAAGTGACCAATACTATTATTCCTGCTACGAACAGGGGAATGCATTTCTAACTGGCTAA


Promoter Sequence:
>Vu_12507::LG3:17660624-17662624(-)
ATGGTTGCGGCCGAAATCCCATATCATGTTTGTTGCAGGGACACCAACCCGACATTTGGTATTTCTTTAGTACAATACGAGTGACAATATATAATTTTTCATCTGAATTATTAACAAAAACCTATCAGATTTTCACTTTGTACTATGAGAGTAAAGATCGGACATAAAACATCTCAATGATTTCTTTCCATTCTCCACTTGTAAAGTTTGATTTGTCCAATTCTCTTTCTTTTATTGAAAAACCTGGGCCTCCTCTTTTCTAAAGTCAAGGAGCGCATCGATTCATCAATTTGAATAAGAAAACCCCAAGTTGCTTCCTAAAGTCATTTTCCTCCACCCATTCATGTTACCACACTTCTTCTAAAATTCTATACCTCACAAACTATATTTTTTTCCCATTAAAATAGTCACAAATCCAATTTGGATTCTCAGCTGGTTTTTCTTTGTAATTTTTTTTATTTATCTCTAAAAGGTTAAATATATTTTTAATTAATTGACTTTTAATAAAAATTGAAATTAGTCTCTTTTCGAAACTTTGAATCAATTCAGTTTCTTATCTTTAGAATTGTATGAATTTAATTTTTTCAACTAAATTTTATTAAGTTTATATGATATTTCAAACACAATTCTTATTAAAATTTGAGTATAAATATGTCAAATAGTGTAAACAATTCAAATGTTAATATAAAACACGTTTGAAAGGTCAAATAAATCAAACAAAATTTAATTAAAATAACTAAATTTAGACATTTATAAAATCAAAGAACTAAATTGGATTAAAATTTTAAAAATAAACTAATTCGAAATTTTAGTGAAAGTTAAGAATAAAAAACATATTTAACTTCTCTTTAAAATATATTCATGAACACCAGTTTTGATATTTTGAAATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATATTAAATATCAACAATATTATTAACGTTCACACCAAAACACTTAGAAAATTTTATTTCTCACAAATTTAACTTATGACGATAAAACATTTCAGAAAACTTAGTCGTGTTGAAGATATTGACAAATTATAAAAAAAACTTCTTCAATCACGTAGATTCATTGTTTTAAGAATTTATCCATGTTGTGTTACATAAATTCTTTAAGACACAATAAGTACTTTCCAATTTTTTTTTAAGAATATTAGAATTAAAAAACTCTAAACAATAGTAAATATAATTAAAATAATACAAGAAGAAGAAAATATAATAAAATAGGTACGAGAGAGAAAAATAACAACAATTTTGCATACCTGTAACTACAATTATCTAGATCTTGGAAAGGAAGCATCGTCCAACAATAAATTTGTTACAAATAATTCTATCAACAAACAAAATCAACCAACATAAATTTAATTGAATACAAACTCAGCCAACTCAAACTCGATTACCTGAAGTCTGTCGTATAAAAAGAATAATAATATTTGGCAAAATTTCTAAAATAATTTTAGATCAACAGTGAAACATAAATAATATTAAAATATTATCAAAAAAAATTATGAAATGTTGTCGGAATATCATTATTTATAAAAAAAAAAAATCCGACAGACTTTTACTATATAAGAGATGTTTCGTAACACGTTGCAGCTTATTAACCGCGACAGTAATATGATCCAAAACAGTAATTAACCAGAAGAACCCCCTTATGCAAATCTGTAAGAGTGAGCATGATTGGTGCAAATAAAAAGTAATTGAGAAAGTTAGAATGAAAGATTGATGCACTTCCTTTATTATGTAGTCGTGATGGGTGACGTCAGCATCCTGAATTGGCGACAGAAAAGTTAACGATGAATGAGCATGCGTGCACCACATGGACGGTGGATATGCAGACTTGCTTATTATAAAAATGAAGCGAGAGAATTAGGAAGAGTGGGAAAACCACATATAAATAGTGGTAGTAGGGTGGTAGAATCCGTAAGTTATCAAGCGAAGAGTTAGAAGAGGAGAAAAAA


Gene Sequence:
>Vu_12507(-)
ATGGTTCAGGAAGAAATGAGAAGGGGTCCGTGGACAGAAGAGGAGGACTTGAAACTGGTGTATTTTGTAAACATGTTTGGAGATCGTAGGTGGGACTTTATAGCAAAGGTATCAGGTTTGAAGGTGGAGGGAGACAGTGAATAATAGGTATGAATATTTCAATCTAAGCACCCTTTAACCACGTCACTTTGTTGTAGGTTTGAATAGAACAGGTAAGAGTTGCAGGTTACGGTGGGTTAATTACCTCCACCCTGATCTCAAACGAGGGAAGCTGACATCCCAAGAAGAACACCTCGTCATGGAGCTTCATTCCAAATGGGGAAATAGGTTTGAGAACCATGCAGAAATTCATCTATAAGCTACCTGCTTATGATCACTCCAAATTTTCATCTTTTCCTACTCTATGCAACACCACCACTCATCATTCCTTTCATACTGTCAATTTTTTCACTTATTTTGTTAATTGGTTACTTCGATTGCGTTGCTCACTTTCATGGTCCCTTGCAGATGGTCAAGAATTGCTCGGAAGCTACCAGGCCGTACTGACAACGAGATTAAGAATTTCTGGAGGACTTTCATGAGGAAAAAGAAGGCTCTAGAGAAAAAACGAGCATCGCCATCCTCCTCCTCGTCATCATCTTCACTGTCCTCAATCAACCATGCTGTGGATTCACATGCTTCCAAAGAGGTTGGAGAGGAGAGCTTTTACGACACAGGTGGATATGGATACGATGATGTAACAGGGTTGATCAGTGCTGGAGAAGAGTTCTCTTTGGATGATATATGGAAAGATATTGTTTTGTCAGAAGATGATACTATTCAGCAACAACCTCTGTACGAATTGCAGAGTCAAGAGGGTTGCAACTTCTCTTCTCCACCTGCAATGATTTATTCTCCATCATCATGGGAGTACAATTCTTCTCACCCCTTATGGGTGATGGATGAAGAAGAAAGTAGCAAGATGTTGTTTCCTGCATCAAGTGACCAATACTATTATTCCTGCTACGAACAGGGGAATGCATTTCTAACTGGCTAA