Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12457 LG3 17079103 17080585 hypothetical protein
Map

Annotations  
category   relationship type   keyword
Pathway   B 09132 Signal transduction   C 04016 MAPK signaling pathway - plant [PATH:ko04016]
SNP Position Effect Amino acid change
T/C 17079400 stop_lost p.Ter72Argext*?
A/G 17079464 missense_variant p.Lys93Arg
C/T 17079469 missense_variant p.Arg95Cys
C/T 17079473 missense_variant p.Ala96Val
T/C 17079507 synonymous_variant p.Cys107Cys
T/C 17079526 missense_variant p.Ser114Pro
A/T 17079543 synonymous_variant p.Pro119Pro
C/A 17079602 missense_variant p.Pro139His
C/A 17079638 missense_variant p.Ser151Tyr
G/C 17079658 missense_variant p.Gly158Arg
G/A 17079666 stop_gained p.Trp160*
G/A 17079676 missense_variant p.Gly164Arg
C/T 17079703 upstream_gene_variant
T/C 17079711 upstream_gene_variant
G/A 17079813 upstream_gene_variant
G/A 17079846 upstream_gene_variant
C/T 17079935 upstream_gene_variant
G/C 17079939 upstream_gene_variant
C/A 17080003 upstream_gene_variant
G/A 17080041 missense_variant p.Cys175Tyr
C/A 17080123 missense_variant p.Ser202Arg
G/A 17080125 missense_variant p.Ser203Asn
T/C 17080130 stop_lost p.Ter205Glnext*?
A/C 17080135 stop_lost p.Ter206Cysext*?
C/T 17080167 upstream_gene_variant
C/T 17080180 upstream_gene_variant
C/T 17080264 synonymous_variant p.Asn220Asn
C/A 17080287 missense_variant p.Pro228His
C/T 17080344 missense_variant p.Ala247Val
C/T 17080421 missense_variant p.Pro273Ser
T/C 17080431 missense_variant p.Leu276Pro
T/C 17080432 synonymous_variant p.Leu276Leu
C/T 17080449 missense_variant p.Pro282Leu
T/C 17080473 missense_variant p.Val290Ala
G/T 17080537 missense_variant p.Gln311His
T/C 17080543 synonymous_variant p.Cys313Cys
G/A 17080550 missense_variant p.Asp316Asn

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12457.1
MDLIVYFFVQWFSQGRAAVLCLIVGTIILLAMVTVALYRSTQSMELIKGSRGTEQGPSILVILHMGLAIHTFDDIMRVTENLSEKYIVGYGASSTVHKCVLKNSRPIVIKRLYNQRQHNQGSLRQNLKLLESIRHRNLVPLHGYALTPNGNLLFYDYMENGSLWDLLHGYIDPEYARSSRLNEKSDVYSFGIVLLELLTEKKAVDNDSNLHHLILSKADNNSIMETVDPEVSITCMDLTHVKKTFQLALLCTKRNPSERPTMHEVARVLASLLPAPLSNIFAPPSKTIDYVQFVIQKGNNLHPPHMERLQSQKCSNDQWFVGECCIK*


CDS Sequence:
>Vu_12457.1
ATGGACCTTATTGTGTACTTCTTTGTTCAGTGGTTTTCTCAAGGGCGGGCTGCAGTTCTTTGTCTCATAGTTGGTACCATCATATTATTGGCGATGGTAACTGTTGCTCTCTACAGATCAACCCAATCCATGGAATTGATTAAAGGATCCAGGGGAACTGAACAAGGGCCATCCATACTTGTAATTCTTCATATGGGCTTGGCCATCCACACCTTTGATGATATCATGAGAGTTACTGAGAATCTCAGTGAGAAGTATATTGTAGGATATGGTGCCTCAAGTACCGTGCACAAGTGTGTTTTGAAGAATTCCCGGCCAATTGTAATTAAACGACTATACAATCAGCGTCAACACAACCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGAAAGCATCAGACACAGGAATCTTGTCCCTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTCTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTACATGGATATATTGACCCTGAGTATGCCAGAAGTTCTAGGTTGAATGAAAAATCTGACGTGTATAGCTTTGGTATTGTTCTACTTGAGCTACTAACAGAAAAGAAAGCAGTGGATAATGATTCCAACTTGCATCACTTGATATTATCTAAGGCAGATAACAACAGTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAAAGAAACCCTTCTGAGAGGCCAACTATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCACCTCTTAGCAACATCTTTGCTCCTCCTTCAAAGACCATTGATTATGTACAATTTGTGATTCAAAAGGGAAACAACCTCCATCCCCCACATATGGAAAGGTTACAATCTCAGAAGTGTTCTAATGATCAATGGTTTGTTGGAGAATGTTGTATCAAATAA


Promoter Sequence:
>Vu_12457::LG3:17077103-17079103(+)
AGATTCCTGTGTCTGATTCCTTTCAATAGTTTCAGGTTCTGTCTCAAACTCCCTTGAGTTGTGTTGATGCTGGTTGTATAGTAGTTCAATTGCAATTGGCCGGGAATTCTTCAAAACACACTTGTACACGGTACCTGAGGCACCATATCCTACAATATATTTCTCACTGAGATTCTCAGTAACTCTCATGATATCATCAAAGGTGTGGATGGCCAAGCCCATATGAAGAATTACAAGTATGGATGGCCCTGAAGAGAAGGAAGAGAAAGAGAAAAACAAATGAGAATTTCGCTCACATAACAATACTAAACAGTATCATCTTGAACATACCTTGTTCAGTTCCCCTGGATCCTTTAATCAATTCCATGGATTGGGTTGATCTGTAGAGAGCAACAGTTACCATCGCCAATAATATGATGGTACCAACTATGAGACAGAGAACTGCAGCCCGCCCTTGAGAAAACCACTGAACAAAGAAGTACACAATAAGGTCCATTATTAACATTGTAGTCAGATAAATTTTACCCCTCACAAACCAATCCTATGTATAAATATAGTCATCATACATATAATTGTAACTATCAAGTCATCTCAGAATGTCACACACCTCTGGATTTTGGTACGTAAGGATCACATATGGATCCTAACCAATTTCCGCATAACAATGGATTTCCAATAAAGCTGCAACATATCACATTACAAGTCGTTGATAAATGAATTAAGAAACCAAGAAAATCCTACAGTTTCCCTCAATAGCTGTCAGCTGAAAACCGAGAGAAGTTCTTCATTAGAGGAATGACCCCGGATAAGTTATTATATGAGAGATTCCTAAGAAATGAAATAAACATTTAGACCAACCACTCAGACACAAATCTGAAGAAAATAATCAGAAAGGAGGCATTGGCTAGCTGCTAGGAATACACACAGGAAGTTAAGACTTAAGCAATTTGTAACCTGGTCTGGAATCTTCCCGCAAATCATTGTTGTTTAAAATCTTATTAGAATTATAGTGAAACGAATAGTACGTTATTTAGAATATGAGTAGTTTCAAAAAAATCAACTAGGAAATACATCATTGCTTAACATACAAAGACACAAGATTCTGCAGCTGACCAATTTCTGAAGGTACACTACCCAACAGATGGTTGAATATAGCCAATATCTGAAACCTATGTTAGGCTATAAATCAGGTAGGTGATTATTGCTGGATCTGCCTAAAGCTATCCTGTGAATATTAGCACAGAATATTCAACCATAGGATAGCTAATATTCACAGGATAGCTTTAGGCAGATCCAGGAATAATCACCTACCTGATTTATAGCCTAACATAGGTTTCTGGCTATATTCAACCATCTGTTGGGTAGTATACCTTCAGAAATTGGTCAGCTGCAGAATCTTGTGTCTCTGTATGTTAAGCAATGATGTATTTCCTAGTTGATTTTTTTGAAACTACTCATATTCTAAATAACGTACTATTCGTTTCACTATAATTCTAATAAGATTTTAAACAACAATGATTTGCGGGAAGATTCCAGACCAGGTTACAAATTGCTTAAGTCTTAACTTCCTGTGTGTATTCCTAGCAGCTAGCCAATGTCTCCTTTCTGATTATTTTCTTCAGATTTGTGTCTGAGTGGTTGGTCTAAATGTTTATTTCATTTCTTAGGAATCTCTCATATAATAACTTATCCGGGGTCATTCCTCTAATGAAGAACTTCTCTCGGTTTTCAGCTGACAGCTATTGAGGGAAACTGTAGGATTTTCTTGGTTTCTTAATTCATTTATCAACGACTTGTAATGTGATATGTTGCAGCTTTATTGGAAATCCATTGTTATGCGGAAATTGATTAGGATCCATATGTGATCCTTACGTACCAAAATCCAGAGGTGTGTGACATTCTGAGATGACTTGATAGTTACAATTATATGTATGATGACTATATTTATACATAGGATTGGTTTGTGAGGGGTAAAATTTATCTGACTACAATGTTAATAA


Gene Sequence:
>Vu_12457(+)
ATGGACCTTATTGTGTACTTCTTTGTTCAGTGGTTTTCTCAAGGGCGGGCTGCAGTTCTTTGTCTCATAGTTGGTACCATCATATTATTGGCGATGGTAACTGTTGCTCTCTACAGATCAACCCAATCCATGGAATTGATTAAAGGATCCAGGGGAACTGAACAAGGTATGTTCAAGATGATACTGTTTAGTATTGTTATGTGAGCGAAATTCTCATTTGTTTTTCTCTTTCTCTTCCTTCTCTTCAGGGCCATCCATACTTGTAATTCTTCATATGGGCTTGGCCATCCACACCTTTGATGATATCATGAGAGTTACTGAGAATCTCAGTGAGAAGTATATTGTAGGATATGGTGCCTCAAGTACCGTGCACAAGTGTGTTTTGAAGAATTCCCGGCCAATTGTAATTAAACGACTATACAATCAGCGTCAACACAACCAAGGGAGTTTGAGACAGAACTTGAAACTATTGGAAAGCATCAGACACAGGAATCTTGTCCCTTTGCATGGTTATGCTCTAACTCCTAATGGAAATCTTCTCTTCTATGACTATATGGAGAATGGCTCTCTGTGGGATCTTCTACATGGTATATTTACTTACAATTGAATCTTATTTTTAAGGTAAATCTGTATGAAGGTGGCTAAAAATTGTTCTTATGGCCTAACTTTCTTTTCTAACAGGTCCCTTGAAAAAGGTAAAACTTGATTGGGAAACACGCTTGAGGATTGTTGTGGGAGCTTCTGAAGGACTTGCTTACCTCCATCATGACTGCAATCCTAGAATTATTCACAGGGATATTAAGTCCTCAAATATCCTGATAGACGAGAACTTCGAAGCTCGTCTCTCTGATTTTGGCATTGCCAAATGTTTGTCAACTACAAGAACACATGCATCAACATCTGTGGTTGGGACAATAGGATATATTGACCCTGAGTATGCCAGAAGTTCTAGGTTGAATGAAAAATCTGACGTGTATAGCTTTGGTATTGTTCTACTTGAGCTACTAACAGAAAAGAAAGCAGTGGATAATGATTCCAACTTGCATCACTTGGTAAGTGCTTTCCGCATTTTTTTTCCAATGATTCTGTCTTACCAAACACATTTGTGTATGCAAAAGAACTCATACATGGCTTGCAGATATTATCTAAGGCAGATAACAACAGTATAATGGAGACTGTGGATCCTGAGGTGTCTATTACCTGCATGGATCTGACCCATGTTAAGAAGACCTTTCAGCTTGCTCTTCTTTGCACAAAAAGAAACCCTTCTGAGAGGCCAACTATGCATGAGGTTGCCAGGGTTTTGGCATCACTACTCCCAGCACCTCTTAGCAACATCTTTGCTCCTCCTTCAAAGACCATTGATTATGTACAATTTGTGATTCAAAAGGGAAACAACCTCCATCCCCCACATATGGAAAGGTTACAATCTCAGAAGTGTTCTAATGATCAATGGTTTGTTGGAGAATGTTGTATCAAATAA