Gene Details:

Gene ID Chr. No. Start Position End Position Function View on
Vu_12454 LG3 17025553 17027356 PREDICTED: dof zinc finger protein DOF2.1
Map

Annotations  
category   relationship type   keyword
Biological Process   involved in   regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated, regulation of transcription, DNA-templated
Cellular Component   located in   nucleus, nucleolus
Molecular Function   enables   transcription cis-regulatory region binding, DNA-binding transcription factor activity, transcription cis-regulatory region binding, DNA-binding transcription factor activity, zinc ion binding
SNP Position Effect Amino acid change
A/T 17025701 3_prime_UTR_variant
C/A 17025938 missense_variant p.Trp262Cys
G/A 17026085 synonymous_variant p.Gly213Gly
C/T 17026795 intron_variant
G/A 17027172 5_prime_UTR_variant
T/A 17027248 5_prime_UTR_variant
T/A 17027249 5_prime_UTR_variant
G/A 17027250 5_prime_UTR_variant

View accession wise SNPs


Sequence Details:

Protein Sequence:
>Vu_12454.1
MDPSTGQHQQMSNQSLENMLACSKAQQERKPRPQPEQALKCPRCDSTNTKFCYYNNYSLSQPRYFCKSCRRYWTKGGTLRNVPVGGGCRKNKRSSSSSSSSKRIQDQGFTPNPNNPLTGFPSLSYDSSDLTLALARLQKQSCGQLGYDEHDFSILGNPTSTPCDILGNPGMHHSSTNPGFLDSLRSGFLGTQSNVQNLYYGYGNGDMGEVDNGNACGGGVSGEMMLPYDQEMSVATTQAVTVTTMKQELCNAREQSESRVLWGFPWQLNGDTNMAELDSGRANWNALNSSWHGLLNSPLM*


CDS Sequence:
>Vu_12454.1
ATGGATCCTTCTACTGGACAACACCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCTTGCAGAAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCATCTTCATCTTCAAAGAGAATCCAAGATCAAGGATTCACACCCAATCCAAACAACCCTCTCACTGGTTTTCCTTCCTTGTCTTATGACTCCAGCGACCTCACTCTTGCACTAGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACTTTTCAATTTTGGGGAATCCCACAAGCACCCCATGTGATATCCTTGGCAACCCTGGCATGCACCACTCTTCCACAAACCCGGGCTTCTTGGATTCTCTTAGAAGTGGGTTCCTTGGAACACAAAGCAATGTTCAGAATCTGTACTATGGATATGGGAATGGAGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATGAGTGTTGCCACCACCCAAGCAGTCACAGTCACCACCATGAAACAAGAGCTTTGCAATGCCAGGGAGCAAAGTGAGAGTAGGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGCTGAGCTTGACTCAGGAAGGGCTAATTGGAATGCTCTCAACTCATCCTGGCATGGACTTCTCAATAGTCCTCTAATGTAG


Promoter Sequence:
>Vu_12454::LG3:17027356-17029356(-)
TTCAGATTGGTTAGCTCTTAATTATCTTATTAATCTTTCATGTTGATTAGTTAGGATATATAATCTTACTTTCTACATAAACCCTAATCAGCTGTTGAACTAAACTAACACATGAACAGTATGTAATTTTTAATGAAAGTATTGAAGATGAAGTTCTTAGCACACTGTGAAAAGAACCCTTATTTAATTTTCTTTTACTTACTGAGATGTTTATTCAGACGTATGGATGCAAAATGTCCATTCAGATCGAGCACGATTCTACAGTGAATGTCACGATCGCAACAAGATGAATCCATGAGTGAATGTGGTCTAAGAATCCACATGGATAGATATTCCAACAAACGCACAAGCGGGATAAGACATGATGACAGTGGTTAGCAATGTAAAAAGATACCTCAATTGCATGGTGTTTATTTTTCTCATTTACACCGATGAGTGCTGGTGTTTTTCTCAAATCATTAACAGAAAAAGTGTTGTTCTATATTAAAAACCGTGAATTTAGCATATTGATTATGTTAAAAACATGTTATACTAAAGATGAGAAGAAGAAGAAGAGTATTAATTAATTTTGGTAAAGTATTTGAAGTGTTATAATAGGAAATAATTGTAATGCGTGTGGAGTGAGAAGGAAAAGAAAGGGCATGCAGGAGGAATTGCATCAATCCAATAAGTGGGAGTTGAGTAAGACAAGTCAGTGACTGTGTTTCAGATTATTATTGATCATCATCAGGAAGAGGGACCACAAGCACCAAAATTGAAGGCCCAAGTGACCCCAAAACAGGTAAAGCAAAAATTGACTCATGAATATGGAGTGAGTGAGTTAGTGAATGAGTGAGTGAGTGGTGACAGTAGTACTTGTTAGGTGTGAAGAATCAACCAATAACTTTCAGCCACCAATATAACGTGTTAATTCCCTTCCATCTATCTGTCTTTACGTTACTGTTATTTGTATATATACATATATATACATATATACATGGTTTTCTTCAAACAAAAAAACATTATGCAGAGTTACACAGCTACAGAATGTTTGAAGTATAGTTGATGGATAATATGAGTTAAAAAGTTGAGTTTTTGTGATGTGGGGATGGAATGTGAATAATGGGAAGAAGAATTTTGGAGTTTGAAGAGGAAATGGAAAAGAAAGGAATGAAGGGAGGAAAAAGACGAAGGAAGGATGAAGATGAAAATGGAGATCCTCTGTCACTGTCATTAGTGTCCCCTTGCCTGTCCCCAACATCATTACAAATCCACATCACCCGGACATTCAACAAACGACGACAATCCTTCCCTTCCATCAATTTCAATTAATAATATCTTCTTCCTGCAACACCCTCTTGGTCCCACTTCATCATACTTACACACATACCAAACAAAATCCTTTTTTTTTTCATTGCAACATACCCTTCTTCGTTTTATTTATTGCCCTCTTTTCTTTACTTGAAAAGAACAAATGGGTTTAGATTAGATTAGATGGAAGGAATGATTAAAATTAAAAACAAAGAAGACGAACATAGGGACGCGGGAGGACGAGGTTTTGTGTTTGGGGGCTGAGAAGATCGCAGAGGTTTTGGTTTTTTTATTTTGTTTTTGGTGTTTGGATTTTGTTAAGGTGGTGAAGTGGATTATAGTGAGAGAGAGAGAGAGAGTGGTGGATGTGTGGGGACCTATGGTGAGGTGGGGTCCATGAATAGTTGCATCCACGCGAGAGAGGGACCTTGTATGTTGGGTTTATGTTTATGTTTCTTTTTGTTTTTGTGTTTTTTTTGGTTCGTATGAAACCGTTGCAGAACAGAATTGGGTAAGTAAGGAAGTGAGAATGCACTAGAATTTTCTTTCTATCTTAATGCTTTCTCTGCGTGCAAGCCAACCTCATCCATCATCGTGTACGGCAAAAAACATCATTGCATTAAACTCCCTTCTCTCTCTTCTCTTTCTCTCTCTTGGGATTGCTTGTGGGGTGCTTTATATATATAACTAGTCCTATACAGGTTTCTATT


Gene Sequence:
>Vu_12454(-)
ACCTCACTTTGCATGGTCTCTCTTCTATACTTATCTTTCTCCACTTTCCCTTCTCTCTCAAGTACTCTCATACACACAAACACACCAAACTGCATACCCACATACACAATCTACCAAAAGCTCTTACCTTTTGAGTTCTTTAGTTGAGTTAAACTCATCGTTTCGATCAGGAGTGCATATATTTCCTTTGTATGGATGGATCCTTCTACTGGACAACACCAGGTAAATATAAAACAACGTATTTTAATTGTGTCTTTCGTGGCTGCTTCTTATTGTCTGGTTTTGGGTTTTGAATTTTTAGTTCATACTTGAGATCAGTTTGGAACAGAGAACATGGCAGTTATCTTGGTTTGTGATCGGTTTTGTTTTATATTTAACATTTTTATAGGAAACTTCTGTCCTCCCTCGTTATTCTAAACCATATACTTTACTATTCATGGTGTTTTCCATGTAATTGATATGTCTCTCGAGCTTAAAAGTAAGGGAAAAATTCCCTTTGAATGTAATAAAGTACAAAATTTGGAAGTTTAAATTAACCCTTTGTATGCATGTTACCATGGAGTCAAATTGGGTTGAGGATTAGTTGGTCAGTGGTTGGGTTTCATTTGACATGTGACGAGTTGGTTAATTTGGATGTTTTTTGTGTTTTGTTTGTTGCAGCAAATGTCTAACCAGTCATTGGAGAACATGTTGGCATGTTCAAAAGCACAGCAGGAGAGGAAGCCAAGGCCTCAGCCAGAACAAGCTCTAAAGTGCCCCAGATGTGACTCCACCAACACCAAATTTTGTTACTACAACAATTACAGCCTTTCCCAGCCAAGGTACTTCTGCAAGTCTTGCAGAAGATATTGGACCAAAGGAGGAACACTGAGGAATGTTCCAGTGGGAGGAGGGTGCAGGAAGAACAAGAGGTCATCATCATCATCTTCATCTTCAAAGAGAATCCAAGATCAAGGATTCACACCCAATCCAAACAACCCTCTCACTGGTTTTCCTTCCTTGTCTTATGACTCCAGCGACCTCACTCTTGCACTAGCAAGGCTGCAAAAGCAGTCATGTGGGCAATTGGGTTATGATGAGCATGACTTTTCAATTTTGGGGAATCCCACAAGCACCCCATGTGATATCCTTGGCAACCCTGGCATGCACCACTCTTCCACAAACCCGGGCTTCTTGGATTCTCTTAGAAGTGGGTTCCTTGGAACACAAAGCAATGTTCAGAATCTGTACTATGGATATGGGAATGGAGACATGGGGGAGGTGGACAATGGCAATGCTTGTGGTGGTGGGGTTAGTGGAGAGATGATGCTGCCTTATGATCAAGAAATGAGTGTTGCCACCACCCAAGCAGTCACAGTCACCACCATGAAACAAGAGCTTTGCAATGCCAGGGAGCAAAGTGAGAGTAGGGTGTTGTGGGGTTTCCCATGGCAACTCAATGGAGACACCAACATGGCTGAGCTTGACTCAGGAAGGGCTAATTGGAATGCTCTCAACTCATCCTGGCATGGACTTCTCAATAGTCCTCTAATGTAGACACAATCATCAAGCTAAGGCACTGATAATTAATTCCTCAAGTGTTTGATGAAAAAGAAAAAAAAAATCAGTCTAATTAGGACTTTCAATCCTCTCGAGTGCTGAGGTTAATAGGGGTTTGGTTGATTCCCTTGAATCATCTTCTTTTACTTTCTTGTTGTTTTCTTTTTCTCCTTTTTGCTCCTTAAATTGTCAAATTTTTTGTACCACTATCCTTTAATTGGTGAATAGACTAATGAAATTTCAGAGGTTGTTTGTTAACCAAGTC